@jbrowse/plugin-sequence 1.6.5 → 1.6.8

package/dist/BgzipFastaAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/ChromSizesAdapter/ChromSizesAdapter.d.ts

@@ -14,5 +14,6 @@ export default class extends BaseAdapter implements RegionsAdapter {
         end: number;
     }[]>;
     getFeatures(): void;
+    getHeader(): {};
     freeResources(): void;
 }

package/dist/ChromSizesAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/DivSequenceRenderer/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/GCContentAdapter/configSchema.d.ts

@@ -1,3 +1,3 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/GCContentAdapter/index.d.ts

@@ -1,6 +1,6 @@
 import PluginManager from '@jbrowse/core/PluginManager';
 declare const _default: (pluginManager: PluginManager) => {
-    configSchema: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+    configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
     getAdapterClass: () => Promise<typeof import("./GCContentAdapter").default>;
 };
 export default _default;

package/dist/IndexedFastaAdapter/IndexedFastaAdapter.d.ts

@@ -15,11 +15,6 @@ export default class extends BaseSequenceAdapter {
         start: number;
         end: number;
     }[]>;
-    /**
-     * Fetch features for a certain region
-     * @param param -
-     * @returns Observable of Feature objects in the region
-     */
     getFeatures(region: NoAssemblyRegion, opts?: BaseOptions): import("rxjs").Observable<Feature>;
     /**
      * called to provide a hint that data tied to a certain region

package/dist/IndexedFastaAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/LinearReferenceSequenceDisplay/configSchema.d.ts

@@ -1 +1 @@
-export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/LinearReferenceSequenceDisplay/model.d.ts

@@ -25,7 +25,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
         renderInProgress: AbortController | undefined;
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
-        features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
+        features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
         layout: any;
         status: string;
         error: unknown;
@@ -43,7 +43,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
         setMessage(messageText: string): void;
         setRendered(props: {
             reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
-            features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature>;
+            features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
             maxHeightReached: boolean;
             renderProps: any;
@@ -117,7 +117,7 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
     currBpPerPx: number;
     message: string;
     featureIdUnderMouse: string | undefined;
-    contextMenuFeature: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
+    contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
     scrollTop: number;
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
@@ -130,8 +130,8 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
     readonly selectedFeatureId: string | undefined;
     readonly DisplayMessageComponent: import("react").FC<any> | undefined;
 } & {
-    readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util/simpleFeature").Feature>;
-    readonly featureUnderMouse: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
+    readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
+    readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
     getFeatureOverlapping(blockKey: string, x: number, y: number): any;
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
@@ -158,11 +158,11 @@ export declare function modelFactory(configSchema: AnyConfigurationSchemaType):
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     setCurrBpPerPx(n: number): void;
     deleteBlock(key: string): void;
-    selectFeature(feature: import("@jbrowse/core/util/simpleFeature").Feature): void;
+    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature: string | undefined): void;
     reload(): void;
-    setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
+    setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
 } & {
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;

package/dist/TwoBitAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/plugin-sequence.cjs.development.js

@@ -2317,6 +2317,11 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
     value: function getFeatures() {
       throw new Error('sequence not available');
     }
+  }, {
+    key: "getHeader",
+    value: function getHeader() {
+      return {};
+    }
   }, {
     key: "freeResources",
     value: function
@@ -2425,12 +2430,6 @@ var _default$1 = /*#__PURE__*/function (_BaseSequenceAdapter) {
 
       return getRegions;
     }()
-    /**
-     * Fetch features for a certain region
-     * @param param -
-     * @returns Observable of Feature objects in the region
-     */
-
   }, {
     key: "getFeatures",
     value: function getFeatures(region, opts) {