@jbrowse/plugin-sequence 1.5.1 → 1.5.5

package/dist/IndexedFastaAdapter/IndexedFastaAdapter.d.ts

@@ -6,14 +6,14 @@ import { AnyConfigurationModel } from '@jbrowse/core/configuration/configuration
 import PluginManager from '@jbrowse/core/PluginManager';
 import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
 export default class extends BaseFeatureDataAdapter implements SequenceAdapter {
-    protected fasta: typeof IndexedFasta;
+    protected fasta: IndexedFasta;
     private seqCache;
     constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getRefNames(opts?: BaseOptions): any;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
     getRegions(opts?: BaseOptions): Promise<{
         refName: string;
         start: number;
-        end: any;
+        end: number;
     }[]>;
     /**
      * Fetch features for a certain region

package/dist/TwoBitAdapter/TwoBitAdapter.d.ts

@@ -9,7 +9,7 @@ export default class TwoBitAdapter extends BaseFeatureDataAdapter implements Seq
     protected chromSizesData: Promise<Record<string, number> | undefined>;
     private initChromSizes;
     constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getRefNames(): Promise<any>;
+    getRefNames(): Promise<string[]>;
     getRegions(): Promise<NoAssemblyRegion[]>;
     /**
      * Fetch features for a certain region

package/dist/plugin-sequence.cjs.development.js

@@ -33,14 +33,9 @@ function ownKeys(object, enumerableOnly) {
 
   if (Object.getOwnPropertySymbols) {
     var symbols = Object.getOwnPropertySymbols(object);
-
-    if (enumerableOnly) {
-      symbols = symbols.filter(function (sym) {
-        return Object.getOwnPropertyDescriptor(object, sym).enumerable;
-      });
-    }
-
-    keys.push.apply(keys, symbols);
+    enumerableOnly && (symbols = symbols.filter(function (sym) {
+      return Object.getOwnPropertyDescriptor(object, sym).enumerable;
+    })), keys.push.apply(keys, symbols);
   }
 
   return keys;
@@ -48,19 +43,12 @@ function ownKeys(object, enumerableOnly) {
 
 function _objectSpread2(target) {
   for (var i = 1; i < arguments.length; i++) {
-    var source = arguments[i] != null ? arguments[i] : {};
-
-    if (i % 2) {
-      ownKeys(Object(source), true).forEach(function (key) {
-        _defineProperty(target, key, source[key]);
-      });
-    } else if (Object.getOwnPropertyDescriptors) {
-      Object.defineProperties(target, Object.getOwnPropertyDescriptors(source));
-    } else {
-      ownKeys(Object(source)).forEach(function (key) {
-        Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
-      });
-    }
+    var source = null != arguments[i] ? arguments[i] : {};
+    i % 2 ? ownKeys(Object(source), !0).forEach(function (key) {
+      _defineProperty(target, key, source[key]);
+    }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) {
+      Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
+    });
   }
 
   return target;
@@ -121,6 +109,9 @@ function _defineProperties(target, props) {
 function _createClass(Constructor, protoProps, staticProps) {
   if (protoProps) _defineProperties(Constructor.prototype, protoProps);
   if (staticProps) _defineProperties(Constructor, staticProps);
+  Object.defineProperty(Constructor, "prototype", {
+    writable: false
+  });
   return Constructor;
 }
 
@@ -144,12 +135,15 @@ function _inherits(subClass, superClass) {
     throw new TypeError("Super expression must either be null or a function");
   }
 
-  subClass.prototype = Object.create(superClass && superClass.prototype, {
-    constructor: {
-      value: subClass,
-      writable: true,
-      configurable: true
-    }
+  Object.defineProperty(subClass, "prototype", {
+    value: Object.create(superClass && superClass.prototype, {
+      constructor: {
+        value: subClass,
+        writable: true,
+        configurable: true
+      }
+    }),
+    writable: false
   });
   if (superClass) _setPrototypeOf(subClass, superClass);
 }
@@ -1941,7 +1935,9 @@ var default_1 = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
 
   }, {
     key: "freeResources",
-    value: function freeResources() {}
+    value: function
+      /* { region } */
+    freeResources() {}
   }]);
 
   return default_1;
@@ -2186,7 +2182,9 @@ var TwoBitAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
 
   }, {
     key: "freeResources",
-    value: function freeResources() {}
+    value: function
+      /* { region } */
+    freeResources() {}
   }]);
 
   return TwoBitAdapter;
@@ -2313,7 +2311,9 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
     }
   }, {
     key: "freeResources",
-    value: function freeResources() {}
+    value: function
+      /* { region } */
+    freeResources() {}
   }]);
 
   return _default;
@@ -2499,7 +2499,9 @@ var _default$1 = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
 
   }, {
     key: "freeResources",
-    value: function freeResources() {}
+    value: function
+      /* { region } */
+    freeResources() {}
   }]);
 
   return _default;
@@ -2546,7 +2548,7 @@ var _default$2 = /*#__PURE__*/function (_IndexedFasta) {
     return _this;
   }
 
-  return _default;
+  return _createClass(_default);
 }(_default$1);
 
 var BgzipFastaAdapter = {