@jbrowse/plugin-linear-genome-view 5.0.0-beta.7 → 5.0.0-beta.9

package/esm/displayKitTests/perRegionTestEnv.d.ts

@@ -254,7 +254,7 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
         allowSetters?: boolean;
     }): {
         applied: string[];
-        unapplied: string[];
+        unapplied: import("@jbrowse/core/util/unknownSnapshotKeys").UnappliedSetting[];
         failed: {
             key: string;
             error: string;
@@ -265,6 +265,9 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
 } & {
     readonly height: number;
     readonly resizing: boolean;
+    readonly scrollContentHeight: number;
+    readonly scrollViewportHeight: number;
+} & {
     readonly scrollableHeight: number;
 } & {
     setScrollTop(scrollTop: number): void;
@@ -276,18 +279,17 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
 } & {
     forceLoadTrack: boolean;
     byteEstimate: import("@jbrowse/display-kit/regionTooLargeUtils").ByteEstimate | undefined;
-    gateMeasuredViewportKey: string | undefined;
+    gateMeasuredViewportKey: unknown;
 } & {
     readonly gateEnabled: boolean;
     readonly byteGateAdapterConfig: Record<string, unknown>;
     readonly configuredFetchSizeLimit: number | undefined;
     readonly densityTooLarge: boolean;
-    readonly byteGateAdapterPath: string[];
+    readonly byteGateAdapterPath: import("@jbrowse/display-kit/RegionTooLargeMixin").ByteGateAdapterPath;
     readonly adapterFetchSizeLimit: number | undefined;
     readonly configForceLoad: boolean;
     readonly gateViewport: import("@jbrowse/display-kit/regionTooLargeUtils").GateViewport | undefined;
 } & {
-    readonly byteGateAdapterKey: string;
     readonly aboveForceLoadFloor: boolean;
     readonly gateExempt: boolean;
     readonly estimatedFetchBytes: number | undefined;
@@ -339,7 +341,7 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
 } & {
     attachRenderingBackend<B>(backend: B, setup: () => import("@jbrowse/render-core/RenderLifecycleMixin").RenderingBackendCallbacks<B>): void;
 } & {
-    activeStopToken: import("@jbrowse/core/util").StopToken | undefined;
+    activeSignal: AbortSignal | undefined;
     fetchGeneration: number;
     reloadCounter: number;
     statusWindow: import("@jbrowse/core/util").StatusWindow;
@@ -360,8 +362,8 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     readonly fetchInert: boolean;
     readonly awaitingPrerequisite: boolean;
     readonly awaitingDependentData: boolean;
-    readonly rpcPropsCacheKey: string;
-    readonly adapterConfigKey: string;
+} & {
+    readonly settingsFetchInputs: unknown;
 } & {
     setError(error?: unknown): void;
     setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
@@ -373,7 +375,7 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     cancelFetchByUser(): void;
     reload(): void;
     beforeDestroy(): void;
-    beginFetch(stopToken: import("@jbrowse/core/util").StopToken): void;
+    beginFetch(signal: AbortSignal): void;
     endFetch(current: boolean): void;
 } & {
     runFetch: (work: (ctx: import("@jbrowse/display-kit/FetchMixin").FetchContext) => Promise<void>) => Promise<void>;
@@ -385,17 +387,16 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     readonly settledSubPixelBinBp: number;
     readonly canRender: boolean;
     readonly rendersCanvas: boolean;
+    readonly trackVisibleRegions: import("@jbrowse/display-kit/regionHost").VisibleRegion[];
     readonly viewportWithinLoadedData: boolean;
     readonly viewportEmpty: boolean;
     readonly fetchSuspended: boolean;
     readonly layoutReady: boolean;
-    readonly zoomFetchKey: string;
     regionHasData(displayedRegionIndex: number): boolean;
     readonly dataSuperseded: boolean;
     readonly renderBlocks: import("@jbrowse/render-core/renderBlock").RenderBlock[];
 } & {
     readonly fetchInputs: import("@jbrowse/display-kit/fetchInputs").FetchInputs;
-    readonly settingsFetchInputs: unknown;
 } & {
     readonly regionPayloads: ReadonlyMap<number, unknown>;
     readonly hasRegionData: boolean;
@@ -432,10 +433,10 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     /** every `fetchNeeded` call, as the region list it was handed */
     fetchLog: IndexedRegion[][];
     /**
-     * What `zoomFetchKey` answers. A volatile, not a `control` knob, and
-     * that is the point: a real display's key reads view state, so the
-     * autorun re-runs when it moves. A plain closure value would be memoized
-     * by the computed and never invalidate.
+     * What `zoomFetchArgs` answers. A volatile, not a `control` knob, and
+     * that is the point: a real display's args read view state, so the
+     * autorun re-runs when they move. A plain closure value would be
+     * memoized by the computed and never invalidate.
      */
     fetchKey: string;
 } & {
@@ -445,7 +446,9 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     readonly loadedData: ReadonlyMap<number, string>;
     readonly gateEnabled: boolean;
     readonly densityTooLarge: boolean;
-    readonly zoomFetchKey: string;
+    zoomFetchArgs(): {
+        key: string;
+    };
 } & {
     setFetchKey(key: string): void;
 } & {
@@ -508,6 +511,11 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 id: string;
             };
             showWidget(_widget: unknown): void;
+        } & {
+            openWidget(type: string, id: string, initialState?: Record<string, unknown>): {
+                type: string;
+                id: string;
+            };
         } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
             name: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
             view: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IAnyModelType>;
@@ -540,6 +548,11 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 id: string;
             };
             showWidget(_widget: unknown): void;
+        } & {
+            openWidget(type: string, id: string, initialState?: Record<string, unknown>): {
+                type: string;
+                id: string;
+            };
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
         view: any;
         track: any;
@@ -746,7 +759,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 allowSetters?: boolean;
             }): {
                 applied: string[];
-                unapplied: string[];
+                unapplied: import("@jbrowse/core/util/unknownSnapshotKeys").UnappliedSetting[];
                 failed: {
                     key: string;
                     error: string;
@@ -757,6 +770,9 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             readonly height: number;
             readonly resizing: boolean;
+            readonly scrollContentHeight: number;
+            readonly scrollViewportHeight: number;
+        } & {
             readonly scrollableHeight: number;
         } & {
             setScrollTop(scrollTop: number): void;
@@ -768,18 +784,17 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             forceLoadTrack: boolean;
             byteEstimate: import("@jbrowse/display-kit/regionTooLargeUtils").ByteEstimate | undefined;
-            gateMeasuredViewportKey: string | undefined;
+            gateMeasuredViewportKey: unknown;
         } & {
             readonly gateEnabled: boolean;
             readonly byteGateAdapterConfig: Record<string, unknown>;
             readonly configuredFetchSizeLimit: number | undefined;
             readonly densityTooLarge: boolean;
-            readonly byteGateAdapterPath: string[];
+            readonly byteGateAdapterPath: import("@jbrowse/display-kit/RegionTooLargeMixin").ByteGateAdapterPath;
             readonly adapterFetchSizeLimit: number | undefined;
             readonly configForceLoad: boolean;
             readonly gateViewport: import("@jbrowse/display-kit/regionTooLargeUtils").GateViewport | undefined;
         } & {
-            readonly byteGateAdapterKey: string;
             readonly aboveForceLoadFloor: boolean;
             readonly gateExempt: boolean;
             readonly estimatedFetchBytes: number | undefined;
@@ -831,7 +846,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             attachRenderingBackend<B>(backend: B, setup: () => import("@jbrowse/render-core/RenderLifecycleMixin").RenderingBackendCallbacks<B>): void;
         } & {
-            activeStopToken: import("@jbrowse/core/util").StopToken | undefined;
+            activeSignal: AbortSignal | undefined;
             fetchGeneration: number;
             reloadCounter: number;
             statusWindow: import("@jbrowse/core/util").StatusWindow;
@@ -852,8 +867,8 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly fetchInert: boolean;
             readonly awaitingPrerequisite: boolean;
             readonly awaitingDependentData: boolean;
-            readonly rpcPropsCacheKey: string;
-            readonly adapterConfigKey: string;
+        } & {
+            readonly settingsFetchInputs: unknown;
         } & {
             setError(error?: unknown): void;
             setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
@@ -865,7 +880,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             cancelFetchByUser(): void;
             reload(): void;
             beforeDestroy(): void;
-            beginFetch(stopToken: import("@jbrowse/core/util").StopToken): void;
+            beginFetch(signal: AbortSignal): void;
             endFetch(current: boolean): void;
         } & {
             runFetch: (work: (ctx: import("@jbrowse/display-kit/FetchMixin").FetchContext) => Promise<void>) => Promise<void>;
@@ -877,17 +892,16 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly settledSubPixelBinBp: number;
             readonly canRender: boolean;
             readonly rendersCanvas: boolean;
+            readonly trackVisibleRegions: import("@jbrowse/display-kit/regionHost").VisibleRegion[];
             readonly viewportWithinLoadedData: boolean;
             readonly viewportEmpty: boolean;
             readonly fetchSuspended: boolean;
             readonly layoutReady: boolean;
-            readonly zoomFetchKey: string;
             regionHasData(displayedRegionIndex: number): boolean;
             readonly dataSuperseded: boolean;
             readonly renderBlocks: import("@jbrowse/render-core/renderBlock").RenderBlock[];
         } & {
             readonly fetchInputs: import("@jbrowse/display-kit/fetchInputs").FetchInputs;
-            readonly settingsFetchInputs: unknown;
         } & {
             readonly regionPayloads: ReadonlyMap<number, unknown>;
             readonly hasRegionData: boolean;
@@ -924,10 +938,10 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             /** every `fetchNeeded` call, as the region list it was handed */
             fetchLog: IndexedRegion[][];
             /**
-             * What `zoomFetchKey` answers. A volatile, not a `control` knob, and
-             * that is the point: a real display's key reads view state, so the
-             * autorun re-runs when it moves. A plain closure value would be memoized
-             * by the computed and never invalidate.
+             * What `zoomFetchArgs` answers. A volatile, not a `control` knob, and
+             * that is the point: a real display's args read view state, so the
+             * autorun re-runs when they move. A plain closure value would be
+             * memoized by the computed and never invalidate.
              */
             fetchKey: string;
         } & {
@@ -937,7 +951,9 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly loadedData: ReadonlyMap<number, string>;
             readonly gateEnabled: boolean;
             readonly densityTooLarge: boolean;
-            readonly zoomFetchKey: string;
+            zoomFetchArgs(): {
+                key: string;
+            };
         } & {
             setFetchKey(key: string): void;
         } & {
@@ -1145,7 +1161,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 allowSetters?: boolean;
             }): {
                 applied: string[];
-                unapplied: string[];
+                unapplied: import("@jbrowse/core/util/unknownSnapshotKeys").UnappliedSetting[];
                 failed: {
                     key: string;
                     error: string;
@@ -1156,6 +1172,9 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             readonly height: number;
             readonly resizing: boolean;
+            readonly scrollContentHeight: number;
+            readonly scrollViewportHeight: number;
+        } & {
             readonly scrollableHeight: number;
         } & {
             setScrollTop(scrollTop: number): void;
@@ -1167,18 +1186,17 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             forceLoadTrack: boolean;
             byteEstimate: import("@jbrowse/display-kit/regionTooLargeUtils").ByteEstimate | undefined;
-            gateMeasuredViewportKey: string | undefined;
+            gateMeasuredViewportKey: unknown;
         } & {
             readonly gateEnabled: boolean;
             readonly byteGateAdapterConfig: Record<string, unknown>;
             readonly configuredFetchSizeLimit: number | undefined;
             readonly densityTooLarge: boolean;
-            readonly byteGateAdapterPath: string[];
+            readonly byteGateAdapterPath: import("@jbrowse/display-kit/RegionTooLargeMixin").ByteGateAdapterPath;
             readonly adapterFetchSizeLimit: number | undefined;
             readonly configForceLoad: boolean;
             readonly gateViewport: import("@jbrowse/display-kit/regionTooLargeUtils").GateViewport | undefined;
         } & {
-            readonly byteGateAdapterKey: string;
             readonly aboveForceLoadFloor: boolean;
             readonly gateExempt: boolean;
             readonly estimatedFetchBytes: number | undefined;
@@ -1230,7 +1248,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             attachRenderingBackend<B>(backend: B, setup: () => import("@jbrowse/render-core/RenderLifecycleMixin").RenderingBackendCallbacks<B>): void;
         } & {
-            activeStopToken: import("@jbrowse/core/util").StopToken | undefined;
+            activeSignal: AbortSignal | undefined;
             fetchGeneration: number;
             reloadCounter: number;
             statusWindow: import("@jbrowse/core/util").StatusWindow;
@@ -1251,8 +1269,8 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly fetchInert: boolean;
             readonly awaitingPrerequisite: boolean;
             readonly awaitingDependentData: boolean;
-            readonly rpcPropsCacheKey: string;
-            readonly adapterConfigKey: string;
+        } & {
+            readonly settingsFetchInputs: unknown;
         } & {
             setError(error?: unknown): void;
             setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
@@ -1264,7 +1282,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             cancelFetchByUser(): void;
             reload(): void;
             beforeDestroy(): void;
-            beginFetch(stopToken: import("@jbrowse/core/util").StopToken): void;
+            beginFetch(signal: AbortSignal): void;
             endFetch(current: boolean): void;
         } & {
             runFetch: (work: (ctx: import("@jbrowse/display-kit/FetchMixin").FetchContext) => Promise<void>) => Promise<void>;
@@ -1276,17 +1294,16 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly settledSubPixelBinBp: number;
             readonly canRender: boolean;
             readonly rendersCanvas: boolean;
+            readonly trackVisibleRegions: import("@jbrowse/display-kit/regionHost").VisibleRegion[];
             readonly viewportWithinLoadedData: boolean;
             readonly viewportEmpty: boolean;
             readonly fetchSuspended: boolean;
             readonly layoutReady: boolean;
-            readonly zoomFetchKey: string;
             regionHasData(displayedRegionIndex: number): boolean;
             readonly dataSuperseded: boolean;
             readonly renderBlocks: import("@jbrowse/render-core/renderBlock").RenderBlock[];
         } & {
             readonly fetchInputs: import("@jbrowse/display-kit/fetchInputs").FetchInputs;
-            readonly settingsFetchInputs: unknown;
         } & {
             readonly regionPayloads: ReadonlyMap<number, unknown>;
             readonly hasRegionData: boolean;
@@ -1323,10 +1340,10 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             /** every `fetchNeeded` call, as the region list it was handed */
             fetchLog: IndexedRegion[][];
             /**
-             * What `zoomFetchKey` answers. A volatile, not a `control` knob, and
-             * that is the point: a real display's key reads view state, so the
-             * autorun re-runs when it moves. A plain closure value would be memoized
-             * by the computed and never invalidate.
+             * What `zoomFetchArgs` answers. A volatile, not a `control` knob, and
+             * that is the point: a real display's args read view state, so the
+             * autorun re-runs when they move. A plain closure value would be
+             * memoized by the computed and never invalidate.
              */
             fetchKey: string;
         } & {
@@ -1336,7 +1353,9 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly loadedData: ReadonlyMap<number, string>;
             readonly gateEnabled: boolean;
             readonly densityTooLarge: boolean;
-            readonly zoomFetchKey: string;
+            zoomFetchArgs(): {
+                key: string;
+            };
         } & {
             setFetchKey(key: string): void;
         } & {

package/esm/displayKitTests/perRegionTestEnv.js

@@ -29,10 +29,10 @@ function makeStateModel(control, gate, configSchema) {
         /** every `fetchNeeded` call, as the region list it was handed */
         fetchLog: [],
         /**
-         * What `zoomFetchKey` answers. A volatile, not a `control` knob, and
-         * that is the point: a real display's key reads view state, so the
-         * autorun re-runs when it moves. A plain closure value would be memoized
-         * by the computed and never invalidate.
+         * What `zoomFetchArgs` answers. A volatile, not a `control` knob, and
+         * that is the point: a real display's args read view state, so the
+         * autorun re-runs when they move. A plain closure value would be
+         * memoized by the computed and never invalidate.
          */
         fetchKey: '',
     }))
@@ -63,8 +63,8 @@ function makeStateModel(control, gate, configSchema) {
         get densityTooLarge() {
             return control.densityTooLarge;
         },
-        get zoomFetchKey() {
-            return self.fetchKey;
+        zoomFetchArgs() {
+            return { key: self.fetchKey };
         },
     }))
         .actions(self => ({

package/esm/index.d.ts

@@ -2,78 +2,19 @@ import Plugin from '@jbrowse/core/Plugin';
 import type PluginManager from '@jbrowse/core/PluginManager';
 export default class LinearGenomeViewPlugin extends Plugin {
     name: string;
-    exports: {
-        baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            readonly fetchSizeLimit: {
-                readonly type: 'number';
-                readonly defaultValue: 1000000;
-                readonly description: "maximum data to attempt to download for a given track, used if adapter doesn't specify one";
-                readonly advanced: true;
-            };
-            readonly forceLoad: {
-                readonly type: 'boolean';
-                readonly defaultValue: false;
-                readonly description: 'Declarative equivalent of the "Force load" button on the "too much data" banner: when true the display always renders, however large the region or dense the features. Off by default (the gate guards against huge downloads). Set it on a view no one can interact with — an embedded / notebook view, or a screenshot — where the region is known and you want it drawn without a click.';
-                readonly advanced: true;
-            };
-            readonly height: {
-                readonly type: "number";
-                readonly defaultValue: 100;
-                readonly description: "default height for the track";
-            };
-            readonly mouseover: {
-                readonly type: "string";
-                readonly description: "text to display when the cursor hovers over a feature";
-                readonly defaultValue: "jexl:get(feature,'_mouseOver')||get(feature,'name')||get(feature,'function')||get(feature,'id')";
-                readonly contextVariable: ["feature"];
-            };
-            readonly jexlFilters: {
-                readonly type: "stringArray";
-                readonly description: "default set of jexl filters to apply to a track. note: these do not use the jexl prefix because they have a deferred evaluation system";
-                readonly defaultValue: readonly [];
-            };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-        SearchBox: {
-            (props: {
-                model: import("./index.ts").LinearGenomeViewModel;
-                showHelp?: boolean;
-                minWidth?: number;
-                maxWidth?: number;
-                style?: React.CSSProperties;
-            }): import("react").JSX.Element;
-            displayName: string;
-        };
-        ZoomControls: {
-            (props: {
-                model: import("./index.ts").LinearGenomeViewModel;
-            }): import("react").JSX.Element;
-            displayName: string;
-        };
-        LinearGenomeView: {
-            (props: {
-                model: import("./index.ts").LinearGenomeViewModel;
-            }): import("react").JSX.Element;
-            displayName: string;
-        };
-    };
     /**
      * #config LinearGenomeViewConfigSchema
      * #category root
      */
     configurationSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        /**
-         * #slot configuration.LinearGenomeViewPlugin.trackLabels
-         * where a track's name is drawn: `offset` gives it its own line above the
-         * data, `overlapping` floats it over the top of the data to save vertical
-         * space, `hidden` omits it. The view menu's "Show..." submenu sets the same
-         * thing per session, under its "Track labels" heading
-         */
         readonly trackLabels: {
-            readonly type: "string";
-            readonly defaultValue: "offset";
-            readonly model: import("@jbrowse/mobx-state-tree").ISimpleType<"hidden" | "offset" | "overlapping">;
+            type: "string";
+        } & {
+            model: import("@jbrowse/mobx-state-tree").ISimpleType<"hidden" | "offset" | "overlapping">;
+        } & {
+            defaultValue: string;
         };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
@@ -90,9 +31,10 @@ export { applyInitHighlights } from './LinearGenomeView/afterAttach.ts';
 export { MultiLevelRubberband } from './MultiLevelRubberband/index.ts';
 export { fetchResults, SearchResultsNotFoundError } from './searchUtils.ts';
 export type { LaunchLinearGenomeViewArgs } from './LaunchLinearGenomeView/index.ts';
-export type { BpOffset, ExportSvgOptions, HighlightType, InitState, LinearGenomeViewLaunchProps, NavLocation, TrackLabelMode, VolatileGuide, } from './LinearGenomeView/types.ts';
+export type { BpOffset, ExportSvgOptions, HighlightInput, HighlightType, InitState, LinearGenomeViewLaunchProps, NavLocation, TrackLabelMode, ViewTrackLabelMode, VolatileGuide, } from './LinearGenomeView/types.ts';
 export type { ScalebarRefNameLabel } from './LinearGenomeView/util.ts';
 export type { RegionsOrientation } from './LinearGenomeView/util.ts';
+export type { CloseUp } from './LinearGenomeView/closeUps.ts';
 export { makeTicks } from './LinearGenomeView/util.ts';
 export type { Tick } from './LinearGenomeView/util.ts';
 export { containingLgv } from './LinearGenomeView/containingLgv.ts';
@@ -117,7 +59,7 @@ export { SvgChrome, SvgClipRect } from '@jbrowse/core/svg/SvgExport';
 export { svgSafeId } from '@jbrowse/core/svg/svgId';
 export { awaitSvgReady, awaitSvgRenders } from '@jbrowse/core/svg/svgReady';
 export type { SvgExportable } from '@jbrowse/core/svg/svgReady';
-export { defaultTextHeight, getRowHeaderLayout, labelBaselineFromTop, labelOffset, totalHeight, trackBoxHeight, trackBoxOffsets, trackLabelLeftOffset, } from './LinearGenomeView/svgcomponents/util.ts';
+export { defaultTextHeight, getRowHeaderLayout, labelBaselineFromTop, labelOffset, totalHeight, trackBoxHeight, trackBoxOffsets, trackLabelMode, trackLabelLeftOffset, } from './LinearGenomeView/svgcomponents/util.ts';
 export { notifySkippedSvgTracks } from '@jbrowse/core/svg/trackNames';
 export { renderViewTracks } from './LinearGenomeView/svgcomponents/renderViewTracks.ts';
 export type { SvgExportTrack, ViewTracksSvg, } from './LinearGenomeView/svgcomponents/renderViewTracks.ts';

package/esm/index.js

@@ -1,24 +1,15 @@
 import Plugin from '@jbrowse/core/Plugin';
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
 import { isAbstractMenuManager } from '@jbrowse/core/util';
-import baseLinearDisplayConfigSchema from '@jbrowse/display-kit/configSchema';
+import { VIEW_TRACK_LABEL_MODES } from '@jbrowse/display-kit/types';
 import { types } from '@jbrowse/mobx-state-tree';
 import LineStyleIcon from '@mui/icons-material/LineStyle';
 import FeatureTrackF from './FeatureTrack/index.js';
 import LaunchLinearGenomeViewF from './LaunchLinearGenomeView/index.js';
 import SequenceFeatureHoverHighlightExtensionF from './LinearGenomeView/components/SequenceFeatureHoverHighlightExtension.js';
 import LinearGenomeViewF from './LinearGenomeView/index.js';
-import { LinearGenomeView, SearchBox, ZoomControls, } from './lazyPluginExports.js';
 export default class LinearGenomeViewPlugin extends Plugin {
     name = 'LinearGenomeViewPlugin';
-    // the three components here are lazy, see lazyPluginExports.tsx — naming a
-    // component in this object is enough to pin it into every host's first paint
-    exports = {
-        baseLinearDisplayConfigSchema,
-        SearchBox,
-        ZoomControls,
-        LinearGenomeView,
-    };
     /**
      * #config LinearGenomeViewConfigSchema
      * #category root
@@ -35,9 +26,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             type: 'string',
             defaultValue: 'offset',
             model: types.enumeration('trackLabelOptions', [
-                'offset',
-                'overlapping',
-                'hidden',
+                ...VIEW_TRACK_LABEL_MODES,
             ]),
         },
     });
@@ -66,14 +55,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
 // here.
 export { DisplayChromeOverlayProvider, DisplayUIProvider, FloatingLegend, TrackControlProvider, plainChromeOverlays, plainTrackControl, useTrackControlMenu, } from '@jbrowse/display-ui';
 export { HighlightBand, HighlightChip, OverviewHighlightBand, SVGHighlightBand, installLinkedViewSync, stateModelFactory as linearGenomeViewStateModelFactory, } from './LinearGenomeView/index.js';
-// Deliberately the component itself, and deliberately not the same `SearchBox`
-// the `exports` object above hands runtime plugins — that one is lazy. An
-// in-tree consumer (comparative view, breakpoint split view) imports this
-// barrel and gets shaken out of every build that doesn't, which is all the
-// laziness it needs; a runtime plugin resolves `exports` at module scope, where
-// only `lazy()` keeps the component out of the host's first paint. Imported
-// straight from the component rather than through `LinearGenomeView/index.ts`
-// so the view registration module holds no React component at all.
+// Imported straight from the component rather than through
+// `LinearGenomeView/index.ts` so the view registration module holds no React
+// component at all; a consumer that never renders it shakes it out.
 export { default as SearchBox } from './LinearGenomeView/components/SearchBox.js';
 // The same two consumers, one composition further on: a header stacking several
 // views draws one search box per row beside the span it is showing, and
@@ -131,7 +115,7 @@ export { SvgChrome, SvgClipRect } from '@jbrowse/core/svg/SvgExport';
 // inset or non-rect clip); ids built from a trackId/refName need it
 export { svgSafeId } from '@jbrowse/core/svg/svgId';
 export { awaitSvgReady, awaitSvgRenders } from '@jbrowse/core/svg/svgReady';
-export { defaultTextHeight, getRowHeaderLayout, labelBaselineFromTop, labelOffset, totalHeight, trackBoxHeight, trackBoxOffsets, trackLabelLeftOffset, } from './LinearGenomeView/svgcomponents/util.js';
+export { defaultTextHeight, getRowHeaderLayout, labelBaselineFromTop, labelOffset, totalHeight, trackBoxHeight, trackBoxOffsets, trackLabelMode, trackLabelLeftOffset, } from './LinearGenomeView/svgcomponents/util.js';
 // Re-exported from core, where it moved so the circular view — which depends
 // on neither this plugin nor the LGV geometry around it — can send the same
 // notification. Kept on this plugin's surface because published plugins

package/esm/searchUtils.d.ts

@@ -4,7 +4,6 @@ import type TextSearchManager from '@jbrowse/core/TextSearch/TextSearchManager';
 import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
 import type { SearchType } from '@jbrowse/core/data_adapters/BaseAdapter';
 import type { AssemblyHost, NotificationSink, TrackCatalog } from '@jbrowse/core/util';
-import type { StopToken } from '@jbrowse/core/util/stopToken';
 declare module '@jbrowse/core/PluginManager' {
     interface ExtensionPointRegistry {
         'LinearGenomeView-searchResultSelected': {
@@ -59,12 +58,12 @@ export declare function handleSelectedRegion({ input, model, assemblyName, grow,
     showHitTrack?: boolean;
 }): Promise<boolean>;
 export declare function checkRef(str: string, isRef: (name: string) => boolean): boolean;
-export declare function fetchResults({ queryString, searchType, assemblyName, textSearchManager, assembly, stopToken, }: {
+export declare function fetchResults({ queryString, searchType, assemblyName, textSearchManager, assembly, signal, }: {
     queryString: string;
     assemblyName: string;
     searchType?: SearchType;
     textSearchManager?: TextSearchManager;
     assembly?: Assembly;
-    stopToken?: StopToken;
+    signal?: AbortSignal;
 }): Promise<BaseResult[]>;
 export declare function splitLast(str: string, split: string): [string, string];

package/esm/searchUtils.js

@@ -327,11 +327,11 @@ export function checkRef(str, isRef) {
     const [ref, rest] = splitLast(str, ':');
     return isRef(str) || (isRef(ref) && /^\d/.test(rest));
 }
-export async function fetchResults({ queryString, searchType, assemblyName, textSearchManager, assembly, stopToken, }) {
+export async function fetchResults({ queryString, searchType, assemblyName, textSearchManager, assembly, signal, }) {
     const textSearchResults = await textSearchManager?.search({
         queryString,
         searchType,
-        stopToken,
+        signal,
     }, assemblyName);
     // ensure aliases are loaded: allRefNames is a pure getter, so reading it does
     // not itself kick off the lazy load. A load failure just leaves allRefNames

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "5.0.0-beta.7",
+  "version": "5.0.0-beta.9",
   "type": "module",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
@@ -21,15 +21,15 @@
     "esm"
   ],
   "dependencies": {
-    "@jbrowse/mobx-state-tree": "^6.5.1",
+    "@jbrowse/mobx-state-tree": "^6.5.2",
     "@mui/icons-material": "^9.4.0",
     "@mui/material": "^9.4.0",
     "mobx": "^7.0.3",
     "mobx-react": "^10.0.2",
-    "@jbrowse/core": "^5.0.0-beta.7",
-    "@jbrowse/display-kit": "^5.0.0-beta.7",
-    "@jbrowse/display-ui": "^5.0.0-beta.7",
-    "@jbrowse/render-core": "^5.0.0-beta.7"
+    "@jbrowse/core": "^5.0.0-beta.9",
+    "@jbrowse/display-kit": "^5.0.0-beta.9",
+    "@jbrowse/display-ui": "^5.0.0-beta.9",
+    "@jbrowse/render-core": "^5.0.0-beta.9"
   },
   "peerDependencies": {
     "react": ">=19.0.0",
@@ -40,7 +40,7 @@
   },
   "sideEffects": false,
   "devDependencies": {
-    "@jbrowse/display-test-utils": "^5.0.0-beta.7"
+    "@jbrowse/display-test-utils": "^5.0.0-beta.9"
   },
   "scripts": {
     "prebuild": "pnpm clean",