@jbrowse/plugin-linear-genome-view 5.0.0-beta.3 → 5.0.0-beta.7

package/esm/LinearGenomeView/containingLgv.d.ts

@@ -9,6 +9,12 @@ import type { IStateTreeNode } from '@jbrowse/mobx-state-tree';
  * it to carry the LGV's own surface is how the display layer would come to
  * depend on the view plugin. A display that wants the view names the view.
  *
+ * A view that lays its displays along a strip of its own — the circular view's
+ * ring host — is answered here too, the way `containingHost` answers it: the
+ * strip carries the members a display reads to draw (`bpToPx`, `pxToBp`, the
+ * blocks), and a display drawn there that reaches for a member the strip has
+ * not is the display that stays off the circle.
+ *
  * Components and structural helpers taking duck-typed model shapes keep calling
  * `getContainingView` — the same carve-out `containingHost` documents.
  */

package/esm/LinearGenomeView/containingLgv.js

@@ -8,9 +8,16 @@ import { getContainingView } from '@jbrowse/core/util';
  * it to carry the LGV's own surface is how the display layer would come to
  * depend on the view plugin. A display that wants the view names the view.
  *
+ * A view that lays its displays along a strip of its own — the circular view's
+ * ring host — is answered here too, the way `containingHost` answers it: the
+ * strip carries the members a display reads to draw (`bpToPx`, `pxToBp`, the
+ * blocks), and a display drawn there that reaches for a member the strip has
+ * not is the display that stays off the circle.
+ *
  * Components and structural helpers taking duck-typed model shapes keep calling
  * `getContainingView` — the same carve-out `containingHost` documents.
  */
 export function containingLgv(self) {
-    return getContainingView(self);
+    const view = getContainingView(self);
+    return (view.regionHost ?? view);
 }

package/esm/LinearGenomeView/model.js

@@ -2527,7 +2527,18 @@ export function stateModelFactory(pluginManager) {
                 return;
             }
             const { assemblyManager } = getSession(self);
-            await when(() => self.volatileWidth !== undefined);
+            // A one-sided `volatileWidth !== undefined` parks forever on a view
+            // that never mounts, and `navToMultiLevelBreak` awaits a Promise.all of
+            // these one line before the `whenViewSettled` that was written to cure
+            // exactly that hang. `isAlive` is the second terminal state and the
+            // guard below is what it means. NOT `self.error`, which is a transient
+            // truth (`assembliesNotFound` while a session assembly is registering)
+            // independent of mounting, so it would return without navigating where
+            // waiting would have navigated correctly.
+            await when(() => self.volatileWidth !== undefined || !isAlive(self));
+            if (!isAlive(self) || self.volatileWidth === undefined) {
+                return;
+            }
             // Generate locations from the parsed regions
             const locations = await generateLocations({
                 regions,

package/esm/displayKitTests/perRegionTestEnv.d.ts

@@ -318,6 +318,7 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     afterAttach(): void;
 } & {
     canvasDrawn: boolean;
+    paintCount: number;
     currentRenderingBackend: unknown;
     renderTick: number;
     autorunsInstalled: boolean;
@@ -479,12 +480,12 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             name: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
             view: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IAnyModelType>;
             configuration: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IType<any, any, any>>;
-            displayTypeDefaults: import("@jbrowse/mobx-state-tree").IType<Record<string, Record<string, unknown>> | null | undefined, Record<string, Record<string, unknown>>, Record<string, Record<string, unknown>>>;
         }> & {
             rpcManager: unknown;
             assemblyManager: unknown;
             theme: import("@mui/material").Theme;
             palette: import("@jbrowse/core/ui/palette").JBrowsePalette;
+            animationMode: import("@jbrowse/core/util").AnimationMode;
             queuedDialogs: import("@jbrowse/display-test-utils").QueuedDialog[];
             selection: unknown;
             notifications: {
@@ -496,7 +497,6 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             openedWidgets: Record<string, unknown>[];
         } & {
             getTrackById: (id: string) => unknown;
-            getDisplayTypeDefault(displayType: string, slot: string): unknown;
         } & {
             setView(view: any): any;
             notify(message: string, level?: string, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
@@ -508,17 +508,16 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 id: string;
             };
             showWidget(_widget: unknown): void;
-            setDisplayTypeDefault(displayType: string, slot: string, value: unknown): void;
         } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
             name: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
             view: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IAnyModelType>;
             configuration: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IType<any, any, any>>;
-            displayTypeDefaults: import("@jbrowse/mobx-state-tree").IType<Record<string, Record<string, unknown>> | null | undefined, Record<string, Record<string, unknown>>, Record<string, Record<string, unknown>>>;
         }, {
             rpcManager: unknown;
             assemblyManager: unknown;
             theme: import("@mui/material").Theme;
             palette: import("@jbrowse/core/ui/palette").JBrowsePalette;
+            animationMode: import("@jbrowse/core/util").AnimationMode;
             queuedDialogs: import("@jbrowse/display-test-utils").QueuedDialog[];
             selection: unknown;
             notifications: {
@@ -530,7 +529,6 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             openedWidgets: Record<string, unknown>[];
         } & {
             getTrackById: (id: string) => unknown;
-            getDisplayTypeDefault(displayType: string, slot: string): unknown;
         } & {
             setView(view: any): any;
             notify(message: string, level?: string, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
@@ -542,7 +540,6 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 id: string;
             };
             showWidget(_widget: unknown): void;
-            setDisplayTypeDefault(displayType: string, slot: string, value: unknown): void;
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
         view: any;
         track: any;
@@ -813,6 +810,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             afterAttach(): void;
         } & {
             canvasDrawn: boolean;
+            paintCount: number;
             currentRenderingBackend: unknown;
             renderTick: number;
             autorunsInstalled: boolean;
@@ -1211,6 +1209,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             afterAttach(): void;
         } & {
             canvasDrawn: boolean;
+            paintCount: number;
             currentRenderingBackend: unknown;
             renderTick: number;
             autorunsInstalled: boolean;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "5.0.0-beta.3",
+  "version": "5.0.0-beta.7",
   "type": "module",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
@@ -26,10 +26,10 @@
     "@mui/material": "^9.4.0",
     "mobx": "^7.0.3",
     "mobx-react": "^10.0.2",
-    "@jbrowse/core": "^5.0.0-beta.3",
-    "@jbrowse/display-kit": "^5.0.0-beta.3",
-    "@jbrowse/display-ui": "^5.0.0-beta.3",
-    "@jbrowse/render-core": "^5.0.0-beta.3"
+    "@jbrowse/core": "^5.0.0-beta.7",
+    "@jbrowse/display-kit": "^5.0.0-beta.7",
+    "@jbrowse/display-ui": "^5.0.0-beta.7",
+    "@jbrowse/render-core": "^5.0.0-beta.7"
   },
   "peerDependencies": {
     "react": ">=19.0.0",
@@ -40,7 +40,7 @@
   },
   "sideEffects": false,
   "devDependencies": {
-    "@jbrowse/display-test-utils": "^5.0.0-beta.3"
+    "@jbrowse/display-test-utils": "^5.0.0-beta.7"
   },
   "scripts": {
     "prebuild": "pnpm clean",