@jbrowse/plugin-linear-genome-view 5.0.0-beta.2 → 5.0.0-beta.20

package/esm/displayKitTests/perRegionTestEnv.d.ts

@@ -31,8 +31,13 @@ export interface PerRegionTestControl {
      */
     estimateBytes: number;
     estimateCalls: number;
-    /** the display's own density verdict, canvas's second too-large axis */
+    /** the display's own density verdict, the feature display's second too-large axis */
     densityTooLarge: boolean;
+    /**
+     * What the next fetch stores, so a test can tell the payload a refetch
+     * replaced from the one that replaced it.
+     */
+    payloadTag: string;
 }
 /**
  * The smallest possible display on `MultiRegionDisplayMixin`: it fetches, it
@@ -40,7 +45,7 @@ export interface PerRegionTestControl {
  * displays compose this foundation, and every one of them adds a plugin's worth
  * of behavior on top — so a test that boots one is testing that plugin as much
  * as the foundation, which is how the foundation's own autoruns came to be
- * pinned only by canvas's suite.
+ * pinned only by the feature display's suite.
  */
 /** Which of the gate's opt-in hooks this display overrides. */
 export interface GateOptIns {
@@ -240,6 +245,8 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
     };
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    configProblemsOf(conf: import("@jbrowse/core/configuration").AnyConfigurationModel): string[];
+    readonly liveNotices: string[];
 } & {
     setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
     setError(error?: unknown): void;
@@ -249,20 +256,44 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
         allowSetters?: boolean;
     }): {
         applied: string[];
-        unapplied: string[];
+        unapplied: import("@jbrowse/core/util/unknownSnapshotKeys").UnappliedSetting[];
         failed: {
             key: string;
             error: string;
         }[];
     };
+} & {
+    readonly plotKeys: string[];
+    readonly plot: import("@jbrowse/core/configuration").Plot;
+    readonly configNotices: string[];
+} & {
+    readonly notices: string[];
+} & {
+    readonly cornerNotices: string[];
+    readonly plotExamples: readonly import("@jbrowse/core/configuration").PlotExample[];
+    readonly configDocsUrl: string;
+    liftPlot(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): import("@jbrowse/core/configuration").AnyConfigurationModel;
+    plotProblems(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): string[];
+    plotWrites(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): Record<string, unknown>;
+} & {
+    applyPlot(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): void;
 } & {
     scrollTop: number;
+    hostHeight: number | undefined;
+} & {
+    readonly configuredHeight: number;
+} & {
+    readonly allottedHeight: number;
 } & {
     readonly height: number;
     readonly resizing: boolean;
+    readonly scrollContentHeight: number;
+    readonly scrollViewportHeight: number;
+} & {
     readonly scrollableHeight: number;
 } & {
     setScrollTop(scrollTop: number): void;
+    setHostHeight(height: number | undefined): void;
     setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
 } & {
@@ -271,18 +302,18 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
 } & {
     forceLoadTrack: boolean;
     byteEstimate: import("@jbrowse/display-kit/regionTooLargeUtils").ByteEstimate | undefined;
-    gateMeasuredViewportKey: string | undefined;
+    gateMeasuredViewportKey: unknown;
 } & {
     readonly gateEnabled: boolean;
     readonly byteGateAdapterConfig: Record<string, unknown>;
     readonly configuredFetchSizeLimit: number | undefined;
     readonly densityTooLarge: boolean;
-    readonly byteGateAdapterPath: string[];
+    readonly byteGateAdapterPath: import("@jbrowse/display-kit/RegionTooLargeMixin").ByteGateAdapterPath;
     readonly adapterFetchSizeLimit: number | undefined;
     readonly configForceLoad: boolean;
+    readonly gateViewportSpanBp: number | undefined;
     readonly gateViewport: import("@jbrowse/display-kit/regionTooLargeUtils").GateViewport | undefined;
 } & {
-    readonly byteGateAdapterKey: string;
     readonly aboveForceLoadFloor: boolean;
     readonly gateExempt: boolean;
     readonly estimatedFetchBytes: number | undefined;
@@ -304,6 +335,7 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     readonly gateSkipsMeasuredViewport: boolean;
 } & {
     clearByteEstimate(): void;
+    clearGateMeasurements(): void;
     setForceLoadTrack(flag: boolean): void;
 } & {
     commitFetchBytes(perRegionBytes: (number | undefined)[], issued: import("@jbrowse/display-kit/regionTooLargeUtils").GateFetchState, partial?: boolean): void;
@@ -313,14 +345,17 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     afterAttach(): void;
 } & {
     canvasDrawn: boolean;
+    paintCount: number;
     currentRenderingBackend: unknown;
     renderTick: number;
     autorunsInstalled: boolean;
     renderError: unknown;
+    offScreen: boolean;
 } & {
     readonly canRender: boolean;
     readonly rendersCanvas: boolean;
     readonly paintInert: boolean;
+    readonly paintSuperseded: boolean;
 } & {
     readonly painted: boolean;
 } & {
@@ -328,11 +363,12 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     resetCanvasDrawn(): void;
     stopRenderingBackend(): void;
     renderNow(): void;
+    setOffScreen(offScreen: boolean): void;
     setRenderError(error: unknown): void;
 } & {
     attachRenderingBackend<B>(backend: B, setup: () => import("@jbrowse/render-core/RenderLifecycleMixin").RenderingBackendCallbacks<B>): void;
 } & {
-    activeStopToken: import("@jbrowse/core/util").StopToken | undefined;
+    activeSignal: AbortSignal | undefined;
     fetchGeneration: number;
     reloadCounter: number;
     statusWindow: import("@jbrowse/core/util").StatusWindow;
@@ -353,7 +389,8 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     readonly fetchInert: boolean;
     readonly awaitingPrerequisite: boolean;
     readonly awaitingDependentData: boolean;
-    readonly rpcPropsCacheKey: string;
+} & {
+    readonly settingsFetchInputs: unknown;
 } & {
     setError(error?: unknown): void;
     setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
@@ -365,7 +402,7 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
     cancelFetchByUser(): void;
     reload(): void;
     beforeDestroy(): void;
-    beginFetch(stopToken: import("@jbrowse/core/util").StopToken): void;
+    beginFetch(signal: AbortSignal): void;
     endFetch(current: boolean): void;
 } & {
     runFetch: (work: (ctx: import("@jbrowse/display-kit/FetchMixin").FetchContext) => Promise<void>) => Promise<void>;
@@ -374,31 +411,44 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
 } & {
     readonly host: import("@jbrowse/display-kit/regionHost").RegionHost;
     readonly canvasWidthPx: number;
+    readonly settledSubPixelBinBp: number;
     readonly canRender: boolean;
     readonly rendersCanvas: boolean;
+    readonly trackVisibleRegions: import("@jbrowse/display-kit/regionHost").VisibleRegion[];
     readonly viewportWithinLoadedData: boolean;
     readonly viewportEmpty: boolean;
     readonly fetchSuspended: boolean;
     readonly layoutReady: boolean;
-    readonly regionFetchKey: string;
-    regionHasData(_displayedRegionIndex: number): boolean;
+    regionHasData(displayedRegionIndex: number): boolean;
     readonly dataSuperseded: boolean;
     readonly renderBlocks: import("@jbrowse/render-core/renderBlock").RenderBlock[];
+} & {
+    readonly fetchInputs: import("@jbrowse/display-kit/fetchInputs").FetchInputs;
+} & {
+    readonly regionPayloads: ReadonlyMap<number, unknown>;
+    readonly hasRegionData: boolean;
 } & {
     isCacheValid(displayedRegionIndex: number): boolean;
 } & {
+    readonly staleSettingsDrawn: boolean;
     readonly dataCurrent: boolean;
     readonly loadedAssembly: import("@jbrowse/core/assemblyManager/assembly").Assembly | undefined;
+} & {
+    readonly phaseViewportCurrent: boolean;
 } & {
     readonly svgReady: boolean;
     readonly paintInert: boolean;
+    readonly paintSuperseded: boolean;
     readonly displayPhase: import("@jbrowse/render-core/displayPhase").DisplayPhase;
 } & {
-    setLoadedRegion(displayedRegionIndex: number, region: import("@jbrowse/core/util").Region, fetchKey?: string): void;
+    setLoadedRegion(displayedRegionIndex: number, region: import("@jbrowse/core/util").Region, payload: import("@jbrowse/display-kit/regionCommit").RegionPayload | undefined, fetchInputs?: import("@jbrowse/display-kit/fetchInputs").FetchInputs): void;
+    evictRegionStore(keep: ReadonlySet<number>): void;
     dropLoadedRegion(displayedRegionIndex: number): void;
     clearDisplaySpecificData(): void;
+    clearSettingsBakedData(): void;
 } & {
     clearAllRpcData(): void;
+    invalidateSettings(): void;
     reload(): void;
 } & {
     fetchNeeded(_needed: IndexedRegion[]): void;
@@ -409,23 +459,25 @@ declare function makeStateModel(control: PerRegionTestControl, gate: GateOptIns,
 } & {
     /** every `fetchNeeded` call, as the region list it was handed */
     fetchLog: IndexedRegion[][];
-    loadedData: Map<number, string>;
     /**
-     * What `regionFetchKey` answers. A volatile, not a `control` knob, and
-     * that is the point: a real display's key reads view state, so the
-     * autorun re-runs when it moves. A plain closure value would be memoized
-     * by the computed and never invalidate.
+     * What `zoomFetchArgs` answers. A volatile, not a `control` knob, and
+     * that is the point: a real display's args read view state, so the
+     * autorun re-runs when they move. A plain closure value would be
+     * memoized by the computed and never invalidate.
      */
     fetchKey: string;
 } & {
+    regionHasData(displayedRegionIndex: number): boolean;
+} & {
+    /** the fetched payloads, off the foundation's store */
+    readonly loadedData: ReadonlyMap<number, string>;
     readonly gateEnabled: boolean;
     readonly densityTooLarge: boolean;
-    readonly regionFetchKey: string;
-    regionHasData(_displayedRegionIndex: number): boolean;
+    zoomFetchArgs(): {
+        key: string;
+    };
 } & {
     setFetchKey(key: string): void;
-    setLoaded(displayedRegionIndex: number, value: string): void;
-    clearDisplaySpecificData(): void;
 } & {
     fetchNeeded(needed: IndexedRegion[]): Promise<void>;
 }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
@@ -448,22 +500,22 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
      */
     estimateBytes?: number;
 }): {
-    createDisplay: ({ displayedRegions, displaySnapshot, skipWidth, regionsInSnapshot, }?: {
+    createDisplay: (args_0?: {
         displayedRegions?: import("@jbrowse/core/util").Region[];
         displaySnapshot?: Record<string, unknown>;
         skipWidth?: boolean;
         regionsInSnapshot?: boolean;
-    }) => {
+    } | undefined) => {
         session: import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
             name: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
             view: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IAnyModelType>;
             configuration: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IType<any, any, any>>;
-            displayTypeDefaults: import("@jbrowse/mobx-state-tree").IType<Record<string, Record<string, unknown>> | null | undefined, Record<string, Record<string, unknown>>, Record<string, Record<string, unknown>>>;
         }> & {
             rpcManager: unknown;
             assemblyManager: unknown;
             theme: import("@mui/material").Theme;
             palette: import("@jbrowse/core/ui/palette").JBrowsePalette;
+            animationMode: import("@jbrowse/core/util").AnimationMode;
             queuedDialogs: import("@jbrowse/display-test-utils").QueuedDialog[];
             selection: unknown;
             notifications: {
@@ -471,26 +523,41 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 level?: string;
                 actions: import("@jbrowse/core/util").SnackAction[];
             }[];
+            widgets: Map<string, unknown>;
+            openedWidgets: Record<string, unknown>[];
         } & {
             getTrackById: (id: string) => unknown;
-            getDisplayTypeDefault(displayType: string, slot: string): unknown;
+            baseTrackConfig: (id: string) => {
+                trackId: string;
+                [key: string]: unknown;
+            } | undefined;
         } & {
             setView(view: any): any;
             notify(message: string, level?: string, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
             notifyError(message: string): void;
             queueDialog(cb: (handleClose: () => void) => import("@jbrowse/display-test-utils").QueuedDialog): void;
             setSelection(thing: unknown): void;
-            setDisplayTypeDefault(displayType: string, slot: string, value: unknown): void;
+            clearSelection(): void;
+            addWidget(type: string, id: string, initialState?: Record<string, unknown>): {
+                type: string;
+                id: string;
+            };
+            showWidget(_widget: unknown): void;
+        } & {
+            openWidget(type: string, id: string, initialState?: Record<string, unknown>): {
+                type: string;
+                id: string;
+            };
         } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
             name: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
             view: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IAnyModelType>;
             configuration: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IType<any, any, any>>;
-            displayTypeDefaults: import("@jbrowse/mobx-state-tree").IType<Record<string, Record<string, unknown>> | null | undefined, Record<string, Record<string, unknown>>, Record<string, Record<string, unknown>>>;
         }, {
             rpcManager: unknown;
             assemblyManager: unknown;
             theme: import("@mui/material").Theme;
             palette: import("@jbrowse/core/ui/palette").JBrowsePalette;
+            animationMode: import("@jbrowse/core/util").AnimationMode;
             queuedDialogs: import("@jbrowse/display-test-utils").QueuedDialog[];
             selection: unknown;
             notifications: {
@@ -498,16 +565,31 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 level?: string;
                 actions: import("@jbrowse/core/util").SnackAction[];
             }[];
+            widgets: Map<string, unknown>;
+            openedWidgets: Record<string, unknown>[];
         } & {
             getTrackById: (id: string) => unknown;
-            getDisplayTypeDefault(displayType: string, slot: string): unknown;
+            baseTrackConfig: (id: string) => {
+                trackId: string;
+                [key: string]: unknown;
+            } | undefined;
         } & {
             setView(view: any): any;
             notify(message: string, level?: string, action?: import("@jbrowse/core/util").SnackAction | import("@jbrowse/core/util").SnackAction[]): void;
             notifyError(message: string): void;
             queueDialog(cb: (handleClose: () => void) => import("@jbrowse/display-test-utils").QueuedDialog): void;
             setSelection(thing: unknown): void;
-            setDisplayTypeDefault(displayType: string, slot: string, value: unknown): void;
+            clearSelection(): void;
+            addWidget(type: string, id: string, initialState?: Record<string, unknown>): {
+                type: string;
+                id: string;
+            };
+            showWidget(_widget: unknown): void;
+        } & {
+            openWidget(type: string, id: string, initialState?: Record<string, unknown>): {
+                type: string;
+                id: string;
+            };
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
         view: any;
         track: any;
@@ -705,6 +787,8 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
             };
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+            configProblemsOf(conf: import("@jbrowse/core/configuration").AnyConfigurationModel): string[];
+            readonly liveNotices: string[];
         } & {
             setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
             setError(error?: unknown): void;
@@ -714,20 +798,44 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 allowSetters?: boolean;
             }): {
                 applied: string[];
-                unapplied: string[];
+                unapplied: import("@jbrowse/core/util/unknownSnapshotKeys").UnappliedSetting[];
                 failed: {
                     key: string;
                     error: string;
                 }[];
             };
+        } & {
+            readonly plotKeys: string[];
+            readonly plot: import("@jbrowse/core/configuration").Plot;
+            readonly configNotices: string[];
+        } & {
+            readonly notices: string[];
+        } & {
+            readonly cornerNotices: string[];
+            readonly plotExamples: readonly import("@jbrowse/core/configuration").PlotExample[];
+            readonly configDocsUrl: string;
+            liftPlot(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): import("@jbrowse/core/configuration").AnyConfigurationModel;
+            plotProblems(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): string[];
+            plotWrites(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): Record<string, unknown>;
+        } & {
+            applyPlot(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): void;
         } & {
             scrollTop: number;
+            hostHeight: number | undefined;
+        } & {
+            readonly configuredHeight: number;
+        } & {
+            readonly allottedHeight: number;
         } & {
             readonly height: number;
             readonly resizing: boolean;
+            readonly scrollContentHeight: number;
+            readonly scrollViewportHeight: number;
+        } & {
             readonly scrollableHeight: number;
         } & {
             setScrollTop(scrollTop: number): void;
+            setHostHeight(height: number | undefined): void;
             setHeight(displayHeight: number): number;
             resizeHeight(distance: number): number;
         } & {
@@ -736,18 +844,18 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             forceLoadTrack: boolean;
             byteEstimate: import("@jbrowse/display-kit/regionTooLargeUtils").ByteEstimate | undefined;
-            gateMeasuredViewportKey: string | undefined;
+            gateMeasuredViewportKey: unknown;
         } & {
             readonly gateEnabled: boolean;
             readonly byteGateAdapterConfig: Record<string, unknown>;
             readonly configuredFetchSizeLimit: number | undefined;
             readonly densityTooLarge: boolean;
-            readonly byteGateAdapterPath: string[];
+            readonly byteGateAdapterPath: import("@jbrowse/display-kit/RegionTooLargeMixin").ByteGateAdapterPath;
             readonly adapterFetchSizeLimit: number | undefined;
             readonly configForceLoad: boolean;
+            readonly gateViewportSpanBp: number | undefined;
             readonly gateViewport: import("@jbrowse/display-kit/regionTooLargeUtils").GateViewport | undefined;
         } & {
-            readonly byteGateAdapterKey: string;
             readonly aboveForceLoadFloor: boolean;
             readonly gateExempt: boolean;
             readonly estimatedFetchBytes: number | undefined;
@@ -769,6 +877,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly gateSkipsMeasuredViewport: boolean;
         } & {
             clearByteEstimate(): void;
+            clearGateMeasurements(): void;
             setForceLoadTrack(flag: boolean): void;
         } & {
             commitFetchBytes(perRegionBytes: (number | undefined)[], issued: import("@jbrowse/display-kit/regionTooLargeUtils").GateFetchState, partial?: boolean): void;
@@ -778,14 +887,17 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             afterAttach(): void;
         } & {
             canvasDrawn: boolean;
+            paintCount: number;
             currentRenderingBackend: unknown;
             renderTick: number;
             autorunsInstalled: boolean;
             renderError: unknown;
+            offScreen: boolean;
         } & {
             readonly canRender: boolean;
             readonly rendersCanvas: boolean;
             readonly paintInert: boolean;
+            readonly paintSuperseded: boolean;
         } & {
             readonly painted: boolean;
         } & {
@@ -793,11 +905,12 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             resetCanvasDrawn(): void;
             stopRenderingBackend(): void;
             renderNow(): void;
+            setOffScreen(offScreen: boolean): void;
             setRenderError(error: unknown): void;
         } & {
             attachRenderingBackend<B>(backend: B, setup: () => import("@jbrowse/render-core/RenderLifecycleMixin").RenderingBackendCallbacks<B>): void;
         } & {
-            activeStopToken: import("@jbrowse/core/util").StopToken | undefined;
+            activeSignal: AbortSignal | undefined;
             fetchGeneration: number;
             reloadCounter: number;
             statusWindow: import("@jbrowse/core/util").StatusWindow;
@@ -818,7 +931,8 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly fetchInert: boolean;
             readonly awaitingPrerequisite: boolean;
             readonly awaitingDependentData: boolean;
-            readonly rpcPropsCacheKey: string;
+        } & {
+            readonly settingsFetchInputs: unknown;
         } & {
             setError(error?: unknown): void;
             setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
@@ -830,7 +944,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             cancelFetchByUser(): void;
             reload(): void;
             beforeDestroy(): void;
-            beginFetch(stopToken: import("@jbrowse/core/util").StopToken): void;
+            beginFetch(signal: AbortSignal): void;
             endFetch(current: boolean): void;
         } & {
             runFetch: (work: (ctx: import("@jbrowse/display-kit/FetchMixin").FetchContext) => Promise<void>) => Promise<void>;
@@ -839,31 +953,44 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             readonly host: import("@jbrowse/display-kit/regionHost").RegionHost;
             readonly canvasWidthPx: number;
+            readonly settledSubPixelBinBp: number;
             readonly canRender: boolean;
             readonly rendersCanvas: boolean;
+            readonly trackVisibleRegions: import("@jbrowse/display-kit/regionHost").VisibleRegion[];
             readonly viewportWithinLoadedData: boolean;
             readonly viewportEmpty: boolean;
             readonly fetchSuspended: boolean;
             readonly layoutReady: boolean;
-            readonly regionFetchKey: string;
-            regionHasData(_displayedRegionIndex: number): boolean;
+            regionHasData(displayedRegionIndex: number): boolean;
             readonly dataSuperseded: boolean;
             readonly renderBlocks: import("@jbrowse/render-core/renderBlock").RenderBlock[];
+        } & {
+            readonly fetchInputs: import("@jbrowse/display-kit/fetchInputs").FetchInputs;
+        } & {
+            readonly regionPayloads: ReadonlyMap<number, unknown>;
+            readonly hasRegionData: boolean;
         } & {
             isCacheValid(displayedRegionIndex: number): boolean;
         } & {
+            readonly staleSettingsDrawn: boolean;
             readonly dataCurrent: boolean;
             readonly loadedAssembly: import("@jbrowse/core/assemblyManager/assembly").Assembly | undefined;
+        } & {
+            readonly phaseViewportCurrent: boolean;
         } & {
             readonly svgReady: boolean;
             readonly paintInert: boolean;
+            readonly paintSuperseded: boolean;
             readonly displayPhase: import("@jbrowse/render-core/displayPhase").DisplayPhase;
         } & {
-            setLoadedRegion(displayedRegionIndex: number, region: import("@jbrowse/core/util").Region, fetchKey?: string): void;
+            setLoadedRegion(displayedRegionIndex: number, region: import("@jbrowse/core/util").Region, payload: import("@jbrowse/display-kit/regionCommit").RegionPayload | undefined, fetchInputs?: import("@jbrowse/display-kit/fetchInputs").FetchInputs): void;
+            evictRegionStore(keep: ReadonlySet<number>): void;
             dropLoadedRegion(displayedRegionIndex: number): void;
             clearDisplaySpecificData(): void;
+            clearSettingsBakedData(): void;
         } & {
             clearAllRpcData(): void;
+            invalidateSettings(): void;
             reload(): void;
         } & {
             fetchNeeded(_needed: IndexedRegion[]): void;
@@ -874,23 +1001,25 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             /** every `fetchNeeded` call, as the region list it was handed */
             fetchLog: IndexedRegion[][];
-            loadedData: Map<number, string>;
             /**
-             * What `regionFetchKey` answers. A volatile, not a `control` knob, and
-             * that is the point: a real display's key reads view state, so the
-             * autorun re-runs when it moves. A plain closure value would be memoized
-             * by the computed and never invalidate.
+             * What `zoomFetchArgs` answers. A volatile, not a `control` knob, and
+             * that is the point: a real display's args read view state, so the
+             * autorun re-runs when they move. A plain closure value would be
+             * memoized by the computed and never invalidate.
              */
             fetchKey: string;
         } & {
+            regionHasData(displayedRegionIndex: number): boolean;
+        } & {
+            /** the fetched payloads, off the foundation's store */
+            readonly loadedData: ReadonlyMap<number, string>;
             readonly gateEnabled: boolean;
             readonly densityTooLarge: boolean;
-            readonly regionFetchKey: string;
-            regionHasData(_displayedRegionIndex: number): boolean;
+            zoomFetchArgs(): {
+                key: string;
+            };
         } & {
             setFetchKey(key: string): void;
-            setLoaded(displayedRegionIndex: number, value: string): void;
-            clearDisplaySpecificData(): void;
         } & {
             fetchNeeded(needed: IndexedRegion[]): Promise<void>;
         } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<Omit<Omit<Omit<{
@@ -1087,6 +1216,8 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
             };
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+            configProblemsOf(conf: import("@jbrowse/core/configuration").AnyConfigurationModel): string[];
+            readonly liveNotices: string[];
         } & {
             setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
             setError(error?: unknown): void;
@@ -1096,20 +1227,44 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
                 allowSetters?: boolean;
             }): {
                 applied: string[];
-                unapplied: string[];
+                unapplied: import("@jbrowse/core/util/unknownSnapshotKeys").UnappliedSetting[];
                 failed: {
                     key: string;
                     error: string;
                 }[];
             };
+        } & {
+            readonly plotKeys: string[];
+            readonly plot: import("@jbrowse/core/configuration").Plot;
+            readonly configNotices: string[];
+        } & {
+            readonly notices: string[];
+        } & {
+            readonly cornerNotices: string[];
+            readonly plotExamples: readonly import("@jbrowse/core/configuration").PlotExample[];
+            readonly configDocsUrl: string;
+            liftPlot(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): import("@jbrowse/core/configuration").AnyConfigurationModel;
+            plotProblems(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): string[];
+            plotWrites(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): Record<string, unknown>;
+        } & {
+            applyPlot(draft: import("@jbrowse/core/configuration").Plot, options?: import("@jbrowse/core/configuration").PlotWriteOptions): void;
         } & {
             scrollTop: number;
+            hostHeight: number | undefined;
+        } & {
+            readonly configuredHeight: number;
+        } & {
+            readonly allottedHeight: number;
         } & {
             readonly height: number;
             readonly resizing: boolean;
+            readonly scrollContentHeight: number;
+            readonly scrollViewportHeight: number;
+        } & {
             readonly scrollableHeight: number;
         } & {
             setScrollTop(scrollTop: number): void;
+            setHostHeight(height: number | undefined): void;
             setHeight(displayHeight: number): number;
             resizeHeight(distance: number): number;
         } & {
@@ -1118,18 +1273,18 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             forceLoadTrack: boolean;
             byteEstimate: import("@jbrowse/display-kit/regionTooLargeUtils").ByteEstimate | undefined;
-            gateMeasuredViewportKey: string | undefined;
+            gateMeasuredViewportKey: unknown;
         } & {
             readonly gateEnabled: boolean;
             readonly byteGateAdapterConfig: Record<string, unknown>;
             readonly configuredFetchSizeLimit: number | undefined;
             readonly densityTooLarge: boolean;
-            readonly byteGateAdapterPath: string[];
+            readonly byteGateAdapterPath: import("@jbrowse/display-kit/RegionTooLargeMixin").ByteGateAdapterPath;
             readonly adapterFetchSizeLimit: number | undefined;
             readonly configForceLoad: boolean;
+            readonly gateViewportSpanBp: number | undefined;
             readonly gateViewport: import("@jbrowse/display-kit/regionTooLargeUtils").GateViewport | undefined;
         } & {
-            readonly byteGateAdapterKey: string;
             readonly aboveForceLoadFloor: boolean;
             readonly gateExempt: boolean;
             readonly estimatedFetchBytes: number | undefined;
@@ -1151,6 +1306,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly gateSkipsMeasuredViewport: boolean;
         } & {
             clearByteEstimate(): void;
+            clearGateMeasurements(): void;
             setForceLoadTrack(flag: boolean): void;
         } & {
             commitFetchBytes(perRegionBytes: (number | undefined)[], issued: import("@jbrowse/display-kit/regionTooLargeUtils").GateFetchState, partial?: boolean): void;
@@ -1160,14 +1316,17 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             afterAttach(): void;
         } & {
             canvasDrawn: boolean;
+            paintCount: number;
             currentRenderingBackend: unknown;
             renderTick: number;
             autorunsInstalled: boolean;
             renderError: unknown;
+            offScreen: boolean;
         } & {
             readonly canRender: boolean;
             readonly rendersCanvas: boolean;
             readonly paintInert: boolean;
+            readonly paintSuperseded: boolean;
         } & {
             readonly painted: boolean;
         } & {
@@ -1175,11 +1334,12 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             resetCanvasDrawn(): void;
             stopRenderingBackend(): void;
             renderNow(): void;
+            setOffScreen(offScreen: boolean): void;
             setRenderError(error: unknown): void;
         } & {
             attachRenderingBackend<B>(backend: B, setup: () => import("@jbrowse/render-core/RenderLifecycleMixin").RenderingBackendCallbacks<B>): void;
         } & {
-            activeStopToken: import("@jbrowse/core/util").StopToken | undefined;
+            activeSignal: AbortSignal | undefined;
             fetchGeneration: number;
             reloadCounter: number;
             statusWindow: import("@jbrowse/core/util").StatusWindow;
@@ -1200,7 +1360,8 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             readonly fetchInert: boolean;
             readonly awaitingPrerequisite: boolean;
             readonly awaitingDependentData: boolean;
-            readonly rpcPropsCacheKey: string;
+        } & {
+            readonly settingsFetchInputs: unknown;
         } & {
             setError(error?: unknown): void;
             setStatusMessage(status?: import("@jbrowse/core/util").RpcStatus): void;
@@ -1212,7 +1373,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
             cancelFetchByUser(): void;
             reload(): void;
             beforeDestroy(): void;
-            beginFetch(stopToken: import("@jbrowse/core/util").StopToken): void;
+            beginFetch(signal: AbortSignal): void;
             endFetch(current: boolean): void;
         } & {
             runFetch: (work: (ctx: import("@jbrowse/display-kit/FetchMixin").FetchContext) => Promise<void>) => Promise<void>;
@@ -1221,31 +1382,44 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             readonly host: import("@jbrowse/display-kit/regionHost").RegionHost;
             readonly canvasWidthPx: number;
+            readonly settledSubPixelBinBp: number;
             readonly canRender: boolean;
             readonly rendersCanvas: boolean;
+            readonly trackVisibleRegions: import("@jbrowse/display-kit/regionHost").VisibleRegion[];
             readonly viewportWithinLoadedData: boolean;
             readonly viewportEmpty: boolean;
             readonly fetchSuspended: boolean;
             readonly layoutReady: boolean;
-            readonly regionFetchKey: string;
-            regionHasData(_displayedRegionIndex: number): boolean;
+            regionHasData(displayedRegionIndex: number): boolean;
             readonly dataSuperseded: boolean;
             readonly renderBlocks: import("@jbrowse/render-core/renderBlock").RenderBlock[];
+        } & {
+            readonly fetchInputs: import("@jbrowse/display-kit/fetchInputs").FetchInputs;
+        } & {
+            readonly regionPayloads: ReadonlyMap<number, unknown>;
+            readonly hasRegionData: boolean;
         } & {
             isCacheValid(displayedRegionIndex: number): boolean;
         } & {
+            readonly staleSettingsDrawn: boolean;
             readonly dataCurrent: boolean;
             readonly loadedAssembly: import("@jbrowse/core/assemblyManager/assembly").Assembly | undefined;
+        } & {
+            readonly phaseViewportCurrent: boolean;
         } & {
             readonly svgReady: boolean;
             readonly paintInert: boolean;
+            readonly paintSuperseded: boolean;
             readonly displayPhase: import("@jbrowse/render-core/displayPhase").DisplayPhase;
         } & {
-            setLoadedRegion(displayedRegionIndex: number, region: import("@jbrowse/core/util").Region, fetchKey?: string): void;
+            setLoadedRegion(displayedRegionIndex: number, region: import("@jbrowse/core/util").Region, payload: import("@jbrowse/display-kit/regionCommit").RegionPayload | undefined, fetchInputs?: import("@jbrowse/display-kit/fetchInputs").FetchInputs): void;
+            evictRegionStore(keep: ReadonlySet<number>): void;
             dropLoadedRegion(displayedRegionIndex: number): void;
             clearDisplaySpecificData(): void;
+            clearSettingsBakedData(): void;
         } & {
             clearAllRpcData(): void;
+            invalidateSettings(): void;
             reload(): void;
         } & {
             fetchNeeded(_needed: IndexedRegion[]): void;
@@ -1256,23 +1430,25 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
         } & {
             /** every `fetchNeeded` call, as the region list it was handed */
             fetchLog: IndexedRegion[][];
-            loadedData: Map<number, string>;
             /**
-             * What `regionFetchKey` answers. A volatile, not a `control` knob, and
-             * that is the point: a real display's key reads view state, so the
-             * autorun re-runs when it moves. A plain closure value would be memoized
-             * by the computed and never invalidate.
+             * What `zoomFetchArgs` answers. A volatile, not a `control` knob, and
+             * that is the point: a real display's args read view state, so the
+             * autorun re-runs when they move. A plain closure value would be
+             * memoized by the computed and never invalidate.
              */
             fetchKey: string;
         } & {
+            regionHasData(displayedRegionIndex: number): boolean;
+        } & {
+            /** the fetched payloads, off the foundation's store */
+            readonly loadedData: ReadonlyMap<number, string>;
             readonly gateEnabled: boolean;
             readonly densityTooLarge: boolean;
-            readonly regionFetchKey: string;
-            regionHasData(_displayedRegionIndex: number): boolean;
+            zoomFetchArgs(): {
+                key: string;
+            };
         } & {
             setFetchKey(key: string): void;
-            setLoaded(displayedRegionIndex: number, value: string): void;
-            clearDisplaySpecificData(): void;
         } & {
             fetchNeeded(needed: IndexedRegion[]): Promise<void>;
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
@@ -1280,7 +1456,7 @@ export declare function createPerRegionTestEnvironment({ measuresBytes, gate, es
     };
     mockRpcCall: jest.Mock<any, any, any>;
     pluginManager: import("@jbrowse/core/PluginManager").default;
-    trackConfig: any;
+    trackConfig: import("@jbrowse/core/configuration").PluggableConfigNode & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/PluginManager").PluggableConfigSchemaType>;
     control: PerRegionTestControl;
 };
 export {};