@jbrowse/plugin-linear-genome-view 3.7.0 → 4.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (396) hide show
  1. package/esm/BaseLinearDisplay/SVGLegend.d.ts +6 -0
  2. package/esm/BaseLinearDisplay/SVGLegend.js +17 -0
  3. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.d.ts +2 -0
  4. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.js +11 -0
  5. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +3 -3
  6. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +12 -8
  7. package/esm/BaseLinearDisplay/components/Block.js +2 -2
  8. package/esm/BaseLinearDisplay/components/BlockErrorMessage.js +2 -2
  9. package/esm/BaseLinearDisplay/components/BlockMsg.js +9 -2
  10. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.d.ts +9 -0
  11. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.js +42 -0
  12. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.d.ts +11 -0
  13. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.js +40 -0
  14. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.d.ts +19 -0
  15. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.js +45 -0
  16. package/esm/BaseLinearDisplay/components/FloatingLabels.d.ts +5 -0
  17. package/esm/BaseLinearDisplay/components/FloatingLabels.js +89 -0
  18. package/esm/BaseLinearDisplay/components/FloatingLegend.d.ts +8 -0
  19. package/esm/BaseLinearDisplay/components/FloatingLegend.js +43 -0
  20. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +1 -1
  21. package/esm/BaseLinearDisplay/components/LinearBlocks.js +4 -6
  22. package/esm/BaseLinearDisplay/components/LoadingOverlay.d.ts +4 -0
  23. package/esm/BaseLinearDisplay/components/LoadingOverlay.js +49 -0
  24. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +3 -2
  25. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +5 -3
  26. package/esm/BaseLinearDisplay/components/MenuPage.d.ts +2 -2
  27. package/esm/BaseLinearDisplay/components/MenuPage.js +1 -1
  28. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.d.ts +19 -0
  29. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.js +48 -0
  30. package/esm/BaseLinearDisplay/components/RenderedBlocks.d.ts +4 -1
  31. package/esm/BaseLinearDisplay/components/RenderedBlocks.js +4 -4
  32. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  33. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +5 -8
  34. package/esm/BaseLinearDisplay/components/TooLargeMessage.js +3 -3
  35. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +1 -0
  36. package/esm/BaseLinearDisplay/components/Tooltip.js +6 -6
  37. package/esm/BaseLinearDisplay/components/util.d.ts +21 -0
  38. package/esm/BaseLinearDisplay/components/util.js +116 -0
  39. package/esm/BaseLinearDisplay/index.d.ts +17 -8
  40. package/esm/BaseLinearDisplay/index.js +13 -6
  41. package/esm/BaseLinearDisplay/model.d.ts +954 -101
  42. package/esm/BaseLinearDisplay/model.js +211 -88
  43. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +5 -5
  44. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +11 -14
  45. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.d.ts +21 -0
  46. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.js +46 -0
  47. package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +3 -3
  48. package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +2 -3
  49. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +1 -1
  50. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +2 -3
  51. package/esm/BaseLinearDisplay/models/calculateLabelPositions.d.ts +24 -0
  52. package/esm/BaseLinearDisplay/models/calculateLabelPositions.js +60 -0
  53. package/esm/BaseLinearDisplay/models/configSchema.d.ts +2 -2
  54. package/esm/BaseLinearDisplay/models/configSchema.js +2 -2
  55. package/esm/BaseLinearDisplay/models/renderSvg.d.ts +3 -7
  56. package/esm/BaseLinearDisplay/models/renderSvg.js +22 -11
  57. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +37 -19
  58. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +151 -135
  59. package/esm/BaseLinearDisplay/models/util.d.ts +4 -4
  60. package/esm/BaseLinearDisplay/models/util.js +16 -13
  61. package/esm/BaseLinearDisplay/renderSvg.d.ts +3 -0
  62. package/esm/BaseLinearDisplay/renderSvg.js +59 -0
  63. package/esm/BaseLinearDisplay/types.d.ts +47 -0
  64. package/esm/BaseLinearDisplay/types.js +3 -0
  65. package/esm/BaseLinearDisplay/util.d.ts +15 -0
  66. package/esm/BaseLinearDisplay/util.js +61 -0
  67. package/esm/BasicTrack/configSchema.d.ts +16 -11
  68. package/esm/BasicTrack/index.js +1 -1
  69. package/esm/FeatureTrack/configSchema.d.ts +16 -11
  70. package/esm/FeatureTrack/index.js +1 -1
  71. package/esm/LaunchLinearGenomeView/index.js +12 -62
  72. package/esm/LinearBareDisplay/configSchema.d.ts +4 -4
  73. package/esm/LinearBareDisplay/configSchema.js +1 -1
  74. package/esm/LinearBareDisplay/index.d.ts +2 -2
  75. package/esm/LinearBareDisplay/index.js +5 -5
  76. package/esm/LinearBareDisplay/model.d.ts +957 -105
  77. package/esm/LinearBareDisplay/model.js +3 -6
  78. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.d.ts +5 -0
  79. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.js +9 -0
  80. package/esm/LinearBasicDisplay/configSchema.d.ts +4 -4
  81. package/esm/LinearBasicDisplay/configSchema.js +1 -1
  82. package/esm/LinearBasicDisplay/index.d.ts +2 -2
  83. package/esm/LinearBasicDisplay/index.js +6 -6
  84. package/esm/LinearBasicDisplay/model.d.ts +1132 -135
  85. package/esm/LinearBasicDisplay/model.js +116 -116
  86. package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/AddFiltersDialog.js +2 -2
  87. package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/SetMaxHeightDialog.js +3 -3
  88. package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/configSchema.d.ts +4 -4
  89. package/esm/LinearFeatureDisplay/configSchema.js +11 -0
  90. package/esm/LinearFeatureDisplay/index.d.ts +3 -0
  91. package/esm/LinearFeatureDisplay/index.js +2 -0
  92. package/esm/LinearFeatureDisplay/model.d.ts +1415 -0
  93. package/esm/LinearFeatureDisplay/model.js +265 -0
  94. package/esm/LinearGenomeView/SVGErrorBox.d.ts +5 -0
  95. package/esm/LinearGenomeView/SVGErrorBox.js +4 -0
  96. package/esm/LinearGenomeView/afterAttach.d.ts +5 -0
  97. package/esm/LinearGenomeView/afterAttach.js +95 -0
  98. package/esm/LinearGenomeView/components/CenterLine.js +6 -4
  99. package/esm/LinearGenomeView/components/Cytobands.js +4 -4
  100. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
  101. package/esm/LinearGenomeView/components/ExportSvgDialog.js +5 -1
  102. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +8 -2
  103. package/esm/LinearGenomeView/components/GetSequenceDialog.js +13 -16
  104. package/esm/LinearGenomeView/components/Gridlines.js +18 -15
  105. package/esm/LinearGenomeView/components/Header.js +9 -9
  106. package/esm/LinearGenomeView/components/HeaderPanControls.js +2 -2
  107. package/esm/LinearGenomeView/components/HeaderRegionWidth.js +4 -5
  108. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +2 -2
  109. package/esm/LinearGenomeView/components/HeaderZoomControls.js +3 -3
  110. package/esm/LinearGenomeView/components/Highlight.d.ts +1 -1
  111. package/esm/LinearGenomeView/components/Highlight.js +6 -6
  112. package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -1
  113. package/esm/LinearGenomeView/components/ImportForm.js +14 -12
  114. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +3 -3
  115. package/esm/LinearGenomeView/components/LinearGenomeView.js +7 -7
  116. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.js +7 -8
  117. package/esm/LinearGenomeView/components/MiniControls.js +6 -6
  118. package/esm/LinearGenomeView/components/NoTracksActiveButton.js +2 -2
  119. package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +1 -1
  120. package/esm/LinearGenomeView/components/OverviewHighlight.js +5 -5
  121. package/esm/LinearGenomeView/components/OverviewRubberband.js +4 -4
  122. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +9 -5
  123. package/esm/LinearGenomeView/components/OverviewScalebar.js +36 -28
  124. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +5 -5
  125. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +7 -7
  126. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +1 -1
  127. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -1
  128. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +10 -10
  129. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +1 -1
  130. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +6 -4
  131. package/esm/LinearGenomeView/components/Rubberband.js +9 -7
  132. package/esm/LinearGenomeView/components/RubberbandSpan.js +4 -5
  133. package/esm/LinearGenomeView/components/Scalebar.js +8 -10
  134. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -1
  135. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +50 -17
  136. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -1
  137. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +13 -11
  138. package/esm/LinearGenomeView/components/SearchBox.d.ts +1 -1
  139. package/esm/LinearGenomeView/components/SearchBox.js +8 -9
  140. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -1
  141. package/esm/LinearGenomeView/components/SearchResultsDialog.js +2 -2
  142. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +1 -1
  143. package/esm/LinearGenomeView/components/SearchResultsTable.js +4 -6
  144. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +5 -5
  145. package/esm/LinearGenomeView/components/TrackContainer.js +25 -17
  146. package/esm/LinearGenomeView/components/TrackLabel.js +10 -11
  147. package/esm/LinearGenomeView/components/TrackLabelContainer.js +7 -8
  148. package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +1 -1
  149. package/esm/LinearGenomeView/components/TrackLabelMenu.js +80 -68
  150. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
  151. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +5 -5
  152. package/esm/LinearGenomeView/components/TracksContainer.js +18 -15
  153. package/esm/LinearGenomeView/components/VerticalGuide.js +5 -3
  154. package/esm/LinearGenomeView/components/fetchSequence.d.ts +7 -2
  155. package/esm/LinearGenomeView/components/useRangeSelect.d.ts +27 -2
  156. package/esm/LinearGenomeView/components/useRangeSelect.js +19 -9
  157. package/esm/LinearGenomeView/components/useWheelScroll.js +22 -12
  158. package/esm/LinearGenomeView/components/util.d.ts +2 -13
  159. package/esm/LinearGenomeView/components/util.js +12 -31
  160. package/esm/LinearGenomeView/index.d.ts +1 -1
  161. package/esm/LinearGenomeView/index.js +3 -3
  162. package/esm/LinearGenomeView/keyboardHandler.d.ts +2 -0
  163. package/esm/LinearGenomeView/keyboardHandler.js +29 -0
  164. package/esm/LinearGenomeView/menuItems.d.ts +7 -0
  165. package/esm/LinearGenomeView/menuItems.js +299 -0
  166. package/esm/LinearGenomeView/model.d.ts +92 -89
  167. package/esm/LinearGenomeView/model.js +166 -414
  168. package/esm/LinearGenomeView/svgExportUtil.d.ts +9 -0
  169. package/esm/LinearGenomeView/svgExportUtil.js +6 -0
  170. package/{dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts → esm/LinearGenomeView/svgcomponents/SVGGridlines.d.ts} +2 -2
  171. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.js +20 -0
  172. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +5 -5
  173. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +4 -3
  174. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +24 -12
  175. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +13 -5
  176. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +2 -2
  177. package/esm/LinearGenomeView/types.d.ts +5 -1
  178. package/esm/LinearGenomeView/util.d.ts +2 -2
  179. package/esm/LinearGenomeView/util.js +7 -5
  180. package/esm/index.d.ts +973 -107
  181. package/esm/index.js +37 -38
  182. package/esm/searchUtils.d.ts +1 -1
  183. package/esm/searchUtils.js +6 -4
  184. package/package.json +28 -33
  185. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +0 -8
  186. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -57
  187. package/dist/BaseLinearDisplay/components/Block.d.ts +0 -14
  188. package/dist/BaseLinearDisplay/components/Block.js +0 -50
  189. package/dist/BaseLinearDisplay/components/BlockErrorMessage.d.ts +0 -7
  190. package/dist/BaseLinearDisplay/components/BlockErrorMessage.js +0 -27
  191. package/dist/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
  192. package/dist/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -26
  193. package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +0 -6
  194. package/dist/BaseLinearDisplay/components/BlockMsg.js +0 -22
  195. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +0 -5
  196. package/dist/BaseLinearDisplay/components/LinearBlocks.js +0 -28
  197. package/dist/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +0 -3
  198. package/dist/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +0 -27
  199. package/dist/BaseLinearDisplay/components/MenuPage.d.ts +0 -8
  200. package/dist/BaseLinearDisplay/components/MenuPage.js +0 -26
  201. package/dist/BaseLinearDisplay/components/RenderedBlocks.d.ts +0 -9
  202. package/dist/BaseLinearDisplay/components/RenderedBlocks.js +0 -27
  203. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +0 -11
  204. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -59
  205. package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +0 -10
  206. package/dist/BaseLinearDisplay/components/TooLargeMessage.js +0 -25
  207. package/dist/BaseLinearDisplay/components/Tooltip.d.ts +0 -12
  208. package/dist/BaseLinearDisplay/components/Tooltip.js +0 -27
  209. package/dist/BaseLinearDisplay/components/types.d.ts +0 -1
  210. package/dist/BaseLinearDisplay/components/types.js +0 -2
  211. package/dist/BaseLinearDisplay/index.d.ts +0 -8
  212. package/dist/BaseLinearDisplay/index.js +0 -20
  213. package/dist/BaseLinearDisplay/model.d.ts +0 -324
  214. package/dist/BaseLinearDisplay/model.js +0 -340
  215. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +0 -32
  216. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +0 -122
  217. package/dist/BaseLinearDisplay/models/TrackHeightMixin.d.ts +0 -11
  218. package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +0 -35
  219. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +0 -2
  220. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +0 -33
  221. package/dist/BaseLinearDisplay/models/configSchema.d.ts +0 -29
  222. package/dist/BaseLinearDisplay/models/configSchema.js +0 -35
  223. package/dist/BaseLinearDisplay/models/renderSvg.d.ts +0 -7
  224. package/dist/BaseLinearDisplay/models/renderSvg.js +0 -80
  225. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +0 -78
  226. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +0 -229
  227. package/dist/BaseLinearDisplay/models/util.d.ts +0 -22
  228. package/dist/BaseLinearDisplay/models/util.js +0 -45
  229. package/dist/BasicTrack/configSchema.d.ts +0 -80
  230. package/dist/BasicTrack/configSchema.js +0 -10
  231. package/dist/BasicTrack/index.d.ts +0 -2
  232. package/dist/BasicTrack/index.js +0 -18
  233. package/dist/FeatureTrack/configSchema.d.ts +0 -80
  234. package/dist/FeatureTrack/configSchema.js +0 -10
  235. package/dist/FeatureTrack/index.d.ts +0 -2
  236. package/dist/FeatureTrack/index.js +0 -19
  237. package/dist/LaunchLinearGenomeView/index.d.ts +0 -2
  238. package/dist/LaunchLinearGenomeView/index.js +0 -70
  239. package/dist/LinearBareDisplay/configSchema.d.ts +0 -32
  240. package/dist/LinearBareDisplay/configSchema.js +0 -13
  241. package/dist/LinearBareDisplay/index.d.ts +0 -4
  242. package/dist/LinearBareDisplay/index.js +0 -26
  243. package/dist/LinearBareDisplay/model.d.ts +0 -324
  244. package/dist/LinearBareDisplay/model.js +0 -38
  245. package/dist/LinearBasicDisplay/components/AddFiltersDialog.js +0 -61
  246. package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.js +0 -28
  247. package/dist/LinearBasicDisplay/configSchema.js +0 -13
  248. package/dist/LinearBasicDisplay/index.d.ts +0 -4
  249. package/dist/LinearBasicDisplay/index.js +0 -29
  250. package/dist/LinearBasicDisplay/model.d.ts +0 -361
  251. package/dist/LinearBasicDisplay/model.js +0 -192
  252. package/dist/LinearGenomeView/components/CenterLine.d.ts +0 -6
  253. package/dist/LinearGenomeView/components/CenterLine.js +0 -38
  254. package/dist/LinearGenomeView/components/Cytobands.d.ts +0 -9
  255. package/dist/LinearGenomeView/components/Cytobands.js +0 -89
  256. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +0 -7
  257. package/dist/LinearGenomeView/components/ExportSvgDialog.js +0 -57
  258. package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +0 -6
  259. package/dist/LinearGenomeView/components/GetSequenceDialog.js +0 -109
  260. package/dist/LinearGenomeView/components/Gridlines.d.ts +0 -7
  261. package/dist/LinearGenomeView/components/Gridlines.js +0 -70
  262. package/dist/LinearGenomeView/components/Header.d.ts +0 -5
  263. package/dist/LinearGenomeView/components/Header.js +0 -38
  264. package/dist/LinearGenomeView/components/HeaderPanControls.d.ts +0 -6
  265. package/dist/LinearGenomeView/components/HeaderPanControls.js +0 -27
  266. package/dist/LinearGenomeView/components/HeaderRegionWidth.d.ts +0 -5
  267. package/dist/LinearGenomeView/components/HeaderRegionWidth.js +0 -21
  268. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +0 -5
  269. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.js +0 -19
  270. package/dist/LinearGenomeView/components/HeaderZoomControls.d.ts +0 -5
  271. package/dist/LinearGenomeView/components/HeaderZoomControls.js +0 -109
  272. package/dist/LinearGenomeView/components/Highlight.d.ts +0 -12
  273. package/dist/LinearGenomeView/components/Highlight.js +0 -95
  274. package/dist/LinearGenomeView/components/ImportForm.d.ts +0 -6
  275. package/dist/LinearGenomeView/components/ImportForm.js +0 -80
  276. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +0 -11
  277. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +0 -32
  278. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +0 -5
  279. package/dist/LinearGenomeView/components/LinearGenomeView.js +0 -57
  280. package/dist/LinearGenomeView/components/LinearGenomeViewContainer.d.ts +0 -5
  281. package/dist/LinearGenomeView/components/LinearGenomeViewContainer.js +0 -98
  282. package/dist/LinearGenomeView/components/MiniControls.d.ts +0 -5
  283. package/dist/LinearGenomeView/components/MiniControls.js +0 -36
  284. package/dist/LinearGenomeView/components/NoTracksActiveButton.d.ts +0 -5
  285. package/dist/LinearGenomeView/components/NoTracksActiveButton.js +0 -23
  286. package/dist/LinearGenomeView/components/OverviewHighlight.d.ts +0 -8
  287. package/dist/LinearGenomeView/components/OverviewHighlight.js +0 -50
  288. package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +0 -9
  289. package/dist/LinearGenomeView/components/OverviewRubberband.js +0 -113
  290. package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.d.ts +0 -10
  291. package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +0 -28
  292. package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +0 -7
  293. package/dist/LinearGenomeView/components/OverviewScalebar.js +0 -146
  294. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +0 -8
  295. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.js +0 -41
  296. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +0 -10
  297. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.js +0 -37
  298. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +0 -8
  299. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +0 -18
  300. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +0 -3
  301. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +0 -56
  302. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +0 -3
  303. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +0 -11
  304. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +0 -16
  305. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +0 -127
  306. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +0 -10
  307. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +0 -53
  308. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +0 -6
  309. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.js +0 -30
  310. package/dist/LinearGenomeView/components/Rubberband.d.ts +0 -7
  311. package/dist/LinearGenomeView/components/Rubberband.js +0 -35
  312. package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +0 -15
  313. package/dist/LinearGenomeView/components/RubberbandSpan.js +0 -39
  314. package/dist/LinearGenomeView/components/RubberbandTooltip.d.ts +0 -5
  315. package/dist/LinearGenomeView/components/RubberbandTooltip.js +0 -20
  316. package/dist/LinearGenomeView/components/Scalebar.d.ts +0 -10
  317. package/dist/LinearGenomeView/components/Scalebar.js +0 -40
  318. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +0 -6
  319. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.js +0 -29
  320. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
  321. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -38
  322. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +0 -6
  323. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.js +0 -46
  324. package/dist/LinearGenomeView/components/SearchBox.d.ts +0 -6
  325. package/dist/LinearGenomeView/components/SearchBox.js +0 -88
  326. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -9
  327. package/dist/LinearGenomeView/components/SearchResultsDialog.js +0 -15
  328. package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +0 -8
  329. package/dist/LinearGenomeView/components/SearchResultsTable.js +0 -74
  330. package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +0 -8
  331. package/dist/LinearGenomeView/components/SequenceSearchDialog.js +0 -67
  332. package/dist/LinearGenomeView/components/TrackContainer.d.ts +0 -8
  333. package/dist/LinearGenomeView/components/TrackContainer.js +0 -55
  334. package/dist/LinearGenomeView/components/TrackLabel.d.ts +0 -7
  335. package/dist/LinearGenomeView/components/TrackLabel.js +0 -49
  336. package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +0 -8
  337. package/dist/LinearGenomeView/components/TrackLabelContainer.js +0 -31
  338. package/dist/LinearGenomeView/components/TrackLabelDragHandle.d.ts +0 -8
  339. package/dist/LinearGenomeView/components/TrackLabelDragHandle.js +0 -32
  340. package/dist/LinearGenomeView/components/TrackLabelMenu.d.ts +0 -5
  341. package/dist/LinearGenomeView/components/TrackLabelMenu.js +0 -93
  342. package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +0 -9
  343. package/dist/LinearGenomeView/components/TrackRenderingContainer.js +0 -50
  344. package/dist/LinearGenomeView/components/TracksContainer.d.ts +0 -7
  345. package/dist/LinearGenomeView/components/TracksContainer.js +0 -84
  346. package/dist/LinearGenomeView/components/VerticalGuide.d.ts +0 -7
  347. package/dist/LinearGenomeView/components/VerticalGuide.js +0 -31
  348. package/dist/LinearGenomeView/components/fetchSequence.d.ts +0 -4
  349. package/dist/LinearGenomeView/components/fetchSequence.js +0 -29
  350. package/dist/LinearGenomeView/components/useRangeSelect.d.ts +0 -59
  351. package/dist/LinearGenomeView/components/useRangeSelect.js +0 -127
  352. package/dist/LinearGenomeView/components/useSideScroll.d.ts +0 -6
  353. package/dist/LinearGenomeView/components/useSideScroll.js +0 -60
  354. package/dist/LinearGenomeView/components/useWheelScroll.d.ts +0 -7
  355. package/dist/LinearGenomeView/components/useWheelScroll.js +0 -62
  356. package/dist/LinearGenomeView/components/util.d.ts +0 -25
  357. package/dist/LinearGenomeView/components/util.js +0 -49
  358. package/dist/LinearGenomeView/consts.d.ts +0 -7
  359. package/dist/LinearGenomeView/consts.js +0 -10
  360. package/dist/LinearGenomeView/index.d.ts +0 -3
  361. package/dist/LinearGenomeView/index.js +0 -53
  362. package/dist/LinearGenomeView/model.d.ts +0 -268
  363. package/dist/LinearGenomeView/model.js +0 -1109
  364. package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +0 -5
  365. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +0 -10
  366. package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +0 -7
  367. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +0 -47
  368. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +0 -6
  369. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +0 -42
  370. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +0 -8
  371. package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +0 -7
  372. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +0 -39
  373. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +0 -7
  374. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +0 -17
  375. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +0 -7
  376. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +0 -14
  377. package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +0 -21
  378. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +0 -32
  379. package/dist/LinearGenomeView/svgcomponents/util.d.ts +0 -8
  380. package/dist/LinearGenomeView/svgcomponents/util.js +0 -8
  381. package/dist/LinearGenomeView/types.d.ts +0 -43
  382. package/dist/LinearGenomeView/types.js +0 -2
  383. package/dist/LinearGenomeView/util.d.ts +0 -26
  384. package/dist/LinearGenomeView/util.js +0 -138
  385. package/dist/index.d.ts +0 -368
  386. package/dist/index.js +0 -120
  387. package/dist/searchUtils.d.ts +0 -26
  388. package/dist/searchUtils.js +0 -80
  389. package/esm/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
  390. package/esm/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -24
  391. package/esm/LinearBasicDisplay/components/AddFiltersDialog.d.ts +0 -9
  392. package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +0 -8
  393. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
  394. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -36
  395. /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/AddFiltersDialog.d.ts +0 -0
  396. /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/SetMaxHeightDialog.d.ts +0 -0
@@ -1,59 +0,0 @@
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- "use strict";
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- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- var desc = Object.getOwnPropertyDescriptor(m, k);
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- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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- desc = { enumerable: true, get: function() { return m[k]; } };
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- }
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- Object.defineProperty(o, k2, desc);
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- }) : (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- o[k2] = m[k];
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- }));
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- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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- Object.defineProperty(o, "default", { enumerable: true, value: v });
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- }) : function(o, v) {
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- o["default"] = v;
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- });
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- var __importStar = (this && this.__importStar) || (function () {
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- var ownKeys = function(o) {
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- ownKeys = Object.getOwnPropertyNames || function (o) {
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- var ar = [];
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- for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
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- return ar;
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- };
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- return ownKeys(o);
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- };
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- return function (mod) {
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- if (mod && mod.__esModule) return mod;
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- var result = {};
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- if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
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- __setModuleDefault(result, mod);
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- return result;
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- };
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- })();
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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- Object.defineProperty(exports, "__esModule", { value: true });
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- const jsx_runtime_1 = require("react/jsx-runtime");
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- const react_1 = require("react");
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- const mobx_react_1 = require("mobx-react");
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- const BlockLoadingMessage_1 = __importDefault(require("./BlockLoadingMessage"));
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- const BlockMsg_1 = __importDefault(require("./BlockMsg"));
44
- const BlockErrorMessage = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./BlockErrorMessage'))));
45
- const ServerSideRenderedBlockContent = (0, mobx_react_1.observer)(function ({ model, }) {
46
- if (model.error) {
47
- return ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(BlockErrorMessage, { model: model }) }));
48
- }
49
- else if (model.message) {
50
- return (0, react_1.isValidElement)(model.message) ? (model.message) : ((0, jsx_runtime_1.jsx)(BlockMsg_1.default, { message: `${model.message}`, severity: "info" }));
51
- }
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- else if (!model.filled) {
53
- return (0, jsx_runtime_1.jsx)(BlockLoadingMessage_1.default, { model: model });
54
- }
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- else {
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- return model.reactElement;
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- }
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- });
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- exports.default = ServerSideRenderedBlockContent;
@@ -1,10 +0,0 @@
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- import type { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
2
- declare const TooLargeMessage: ({ model, }: {
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- model: {
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- regionTooLargeReason: string;
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- featureDensityStats?: FeatureDensityStats;
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- setFeatureDensityStatsLimit: (s?: FeatureDensityStats) => void;
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- reload: () => void;
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- };
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- }) => import("react/jsx-runtime").JSX.Element;
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- export default TooLargeMessage;
@@ -1,25 +0,0 @@
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- "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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- Object.defineProperty(exports, "__esModule", { value: true });
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- const jsx_runtime_1 = require("react/jsx-runtime");
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- const material_1 = require("@mui/material");
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- const mobx_react_1 = require("mobx-react");
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- const mobx_state_tree_1 = require("mobx-state-tree");
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- const BlockMsg_1 = __importDefault(require("../components/BlockMsg"));
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- const TooLargeMessage = (0, mobx_react_1.observer)(function ({ model, }) {
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- const { regionTooLargeReason } = model;
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- return ((0, jsx_runtime_1.jsx)(BlockMsg_1.default, { severity: "warning", action: (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
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- if ((0, mobx_state_tree_1.isAlive)(model)) {
15
- model.setFeatureDensityStatsLimit(model.featureDensityStats);
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- model.reload();
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- }
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- }, children: "Force load" }), message: [
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- regionTooLargeReason,
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- 'Zoom in to see features or force load (may be slow)',
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- ]
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- .filter(f => !!f)
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- .join('. ') }));
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- });
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- exports.default = TooLargeMessage;
@@ -1,12 +0,0 @@
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- import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
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- import type { Feature } from '@jbrowse/core/util';
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- type Coord = [number, number];
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- declare const Tooltip: ({ model, clientMouseCoord, }: {
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- model: {
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- featureUnderMouse: Feature | undefined;
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- mouseoverExtraInformation: string | undefined;
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- configuration: AnyConfigurationModel;
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- };
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- clientMouseCoord: Coord;
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- }) => import("react/jsx-runtime").JSX.Element | null;
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- export default Tooltip;
@@ -1,27 +0,0 @@
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- "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
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- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const react_1 = require("react");
8
- const configuration_1 = require("@jbrowse/core/configuration");
9
- const ui_1 = require("@jbrowse/core/ui");
10
- const BaseTooltip_1 = __importDefault(require("@jbrowse/core/ui/BaseTooltip"));
11
- const mobx_react_1 = require("mobx-react");
12
- const TooltipContents = (0, react_1.forwardRef)(function TooltipContents2({ message }, ref) {
13
- return ((0, jsx_runtime_1.jsx)("div", { ref: ref, children: (0, react_1.isValidElement)(message) ? (message) : message ? ((0, jsx_runtime_1.jsx)(ui_1.SanitizedHTML, { html: String(message) })) : null }));
14
- });
15
- const Tooltip = (0, mobx_react_1.observer)(function ({ model, clientMouseCoord, }) {
16
- const { featureUnderMouse, mouseoverExtraInformation } = model;
17
- const x = clientMouseCoord[0] + 15;
18
- const y = clientMouseCoord[1];
19
- const contents = featureUnderMouse
20
- ? (0, configuration_1.getConf)(model, 'mouseover', {
21
- feature: featureUnderMouse,
22
- mouseoverExtraInformation,
23
- })
24
- : undefined;
25
- return featureUnderMouse && contents ? ((0, jsx_runtime_1.jsx)(BaseTooltip_1.default, { clientPoint: { x, y }, children: (0, jsx_runtime_1.jsx)(TooltipContents, { message: contents }) })) : null;
26
- });
27
- exports.default = Tooltip;
@@ -1 +0,0 @@
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- export type Coord = [number, number];
@@ -1,2 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
@@ -1,8 +0,0 @@
1
- export { default as baseLinearDisplayConfigSchema } from './models/configSchema';
2
- export type { BlockModel } from './models/serverSideRenderedBlock';
3
- export { BaseLinearDisplay } from './model';
4
- export type { BaseLinearDisplayModel, BaseLinearDisplayStateModel, ExportSvgDisplayOptions, } from './model';
5
- export { BlockMsg, Tooltip, default as BaseLinearDisplayComponent, } from './components/BaseLinearDisplay';
6
- export { default as TrackHeightMixin } from './models/TrackHeightMixin';
7
- export { default as FeatureDensityMixin } from './models/FeatureDensityMixin';
8
- export { default as TooLargeMessage } from './components/TooLargeMessage';
@@ -1,20 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.TooLargeMessage = exports.FeatureDensityMixin = exports.TrackHeightMixin = exports.BaseLinearDisplayComponent = exports.Tooltip = exports.BlockMsg = exports.BaseLinearDisplay = exports.baseLinearDisplayConfigSchema = void 0;
7
- var configSchema_1 = require("./models/configSchema");
8
- Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
9
- var model_1 = require("./model");
10
- Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return model_1.BaseLinearDisplay; } });
11
- var BaseLinearDisplay_1 = require("./components/BaseLinearDisplay");
12
- Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_1.BlockMsg; } });
13
- Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return BaseLinearDisplay_1.Tooltip; } });
14
- Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return __importDefault(BaseLinearDisplay_1).default; } });
15
- var TrackHeightMixin_1 = require("./models/TrackHeightMixin");
16
- Object.defineProperty(exports, "TrackHeightMixin", { enumerable: true, get: function () { return __importDefault(TrackHeightMixin_1).default; } });
17
- var FeatureDensityMixin_1 = require("./models/FeatureDensityMixin");
18
- Object.defineProperty(exports, "FeatureDensityMixin", { enumerable: true, get: function () { return __importDefault(FeatureDensityMixin_1).default; } });
19
- var TooLargeMessage_1 = require("./components/TooLargeMessage");
20
- Object.defineProperty(exports, "TooLargeMessage", { enumerable: true, get: function () { return __importDefault(TooLargeMessage_1).default; } });
@@ -1,324 +0,0 @@
1
- import type React from 'react';
2
- import CompositeMap from '@jbrowse/core/util/compositeMap';
3
- import type { ExportSvgOptions } from '../LinearGenomeView/types';
4
- import type { MenuItem } from '@jbrowse/core/ui';
5
- import type { AnyReactComponentType, Feature } from '@jbrowse/core/util';
6
- import type { BaseBlock } from '@jbrowse/core/util/blockTypes';
7
- import type { ThemeOptions } from '@mui/material';
8
- import type { Instance } from 'mobx-state-tree';
9
- export interface Layout {
10
- minX: number;
11
- minY: number;
12
- maxX: number;
13
- maxY: number;
14
- name: string;
15
- }
16
- type LayoutRecord = [number, number, number, number] | [
17
- number,
18
- number,
19
- number,
20
- number,
21
- {
22
- label?: string;
23
- description?: string;
24
- refName: string;
25
- }
26
- ];
27
- export interface ExportSvgDisplayOptions extends ExportSvgOptions {
28
- overrideHeight: number;
29
- theme: ThemeOptions;
30
- }
31
- export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
32
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
33
- type: import("mobx-state-tree").ISimpleType<string>;
34
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
35
- } & {
36
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
37
- } & {
38
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
39
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
40
- } & {
41
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
42
- key: import("mobx-state-tree").ISimpleType<string>;
43
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
44
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
45
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
46
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
47
- }, {
48
- stopToken: string | undefined;
49
- filled: boolean;
50
- reactElement: React.ReactElement | undefined;
51
- features: Map<string, Feature> | undefined;
52
- layout: any;
53
- status: string;
54
- error: unknown;
55
- message: string | undefined;
56
- maxHeightReached: boolean;
57
- ReactComponent: ({ model, }: {
58
- model: {
59
- error?: unknown;
60
- reload: () => void;
61
- message: React.ReactNode;
62
- filled?: boolean;
63
- status?: string;
64
- reactElement?: React.ReactElement;
65
- };
66
- }) => import("react/jsx-runtime").JSX.Element | undefined;
67
- renderProps: any;
68
- } & {
69
- doReload(): void;
70
- afterAttach(): void;
71
- setStatus(message: string): void;
72
- setLoading(newStopToken: string): void;
73
- setMessage(messageText: string): void;
74
- setRendered(props: import("./models/serverSideRenderedBlock").RenderedProps | undefined): void;
75
- setError(error: unknown): void;
76
- reload(): void;
77
- beforeDestroy(): void;
78
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
79
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
80
- maxFeatureScreenDensity: {
81
- type: string;
82
- description: string;
83
- defaultValue: number;
84
- };
85
- fetchSizeLimit: {
86
- type: string;
87
- defaultValue: number;
88
- description: string;
89
- };
90
- height: {
91
- type: string;
92
- defaultValue: number;
93
- description: string;
94
- };
95
- mouseover: {
96
- type: string;
97
- description: string;
98
- defaultValue: string;
99
- contextVariable: string[];
100
- };
101
- jexlFilters: {
102
- type: string;
103
- description: string;
104
- defaultValue: never[];
105
- };
106
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
107
- }, {
108
- rendererTypeName: string;
109
- error: unknown;
110
- message: string | undefined;
111
- } & {
112
- readonly RenderingComponent: React.FC<{
113
- model: {
114
- id: string;
115
- type: string;
116
- rpcDriverName: string | undefined;
117
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
118
- rendererTypeName: string;
119
- error: unknown;
120
- message: string | undefined;
121
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
122
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
123
- type: import("mobx-state-tree").ISimpleType<string>;
124
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
125
- }, {
126
- rendererTypeName: string;
127
- error: unknown;
128
- message: string | undefined;
129
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
130
- onHorizontalScroll?: () => void;
131
- blockState?: Record<string, any>;
132
- }>;
133
- readonly DisplayBlurb: React.FC<{
134
- model: {
135
- id: string;
136
- type: string;
137
- rpcDriverName: string | undefined;
138
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
139
- rendererTypeName: string;
140
- error: unknown;
141
- message: string | undefined;
142
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
143
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
144
- type: import("mobx-state-tree").ISimpleType<string>;
145
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
146
- }, {
147
- rendererTypeName: string;
148
- error: unknown;
149
- message: string | undefined;
150
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
151
- }> | null;
152
- readonly adapterConfig: any;
153
- readonly parentTrack: any;
154
- renderProps(): any;
155
- readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
156
- readonly DisplayMessageComponent: undefined | React.FC<any>;
157
- trackMenuItems(): MenuItem[];
158
- readonly viewMenuActions: MenuItem[];
159
- regionCannotBeRendered(): null;
160
- } & {
161
- setMessage(arg?: string): void;
162
- setError(error?: unknown): void;
163
- setRpcDriverName(rpcDriverName: string): void;
164
- reload(): void;
165
- } & {
166
- scrollTop: number;
167
- } & {
168
- readonly height: number;
169
- } & {
170
- setScrollTop(scrollTop: number): void;
171
- setHeight(displayHeight: number): number;
172
- resizeHeight(distance: number): number;
173
- } & {
174
- featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
175
- featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
176
- currStatsBpPerPx: number;
177
- } & {
178
- readonly currentBytesRequested: number;
179
- readonly currentFeatureScreenDensity: number;
180
- readonly maxFeatureScreenDensity: any;
181
- readonly featureDensityStatsReady: boolean;
182
- readonly maxAllowableBytes: number;
183
- } & {
184
- afterAttach(): void;
185
- } & {
186
- setCurrStatsBpPerPx(n: number): void;
187
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
188
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
189
- setFeatureDensityStatsP(arg: any): void;
190
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
191
- clearFeatureDensityStats(): void;
192
- } & {
193
- readonly regionTooLarge: boolean;
194
- readonly regionTooLargeReason: string;
195
- } & {
196
- readonly statsReadyAndRegionNotTooLarge: boolean;
197
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
198
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
199
- } & {
200
- mouseoverExtraInformation: string | undefined;
201
- featureIdUnderMouse: undefined | string;
202
- contextMenuFeature: undefined | Feature;
203
- } & {
204
- readonly DisplayMessageComponent: undefined | React.FC<any>;
205
- readonly blockType: "staticBlocks" | "dynamicBlocks";
206
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
207
- } & {
208
- readonly renderDelay: number;
209
- readonly TooltipComponent: AnyReactComponentType;
210
- readonly selectedFeatureId: string | undefined;
211
- copyInfoToClipboard(feature: Feature): void;
212
- } & {
213
- readonly features: CompositeMap<string, Feature>;
214
- readonly featureUnderMouse: Feature | undefined;
215
- readonly layoutFeatures: CompositeMap<string, LayoutRecord>;
216
- getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
217
- getFeatureByID(blockKey: string, id: string): LayoutRecord | undefined;
218
- searchFeatureByID(id: string): LayoutRecord | undefined;
219
- } & {
220
- addBlock(key: string, block: BaseBlock): void;
221
- deleteBlock(key: string): void;
222
- selectFeature(feature: Feature): void;
223
- navToFeature(feature: Feature): void;
224
- clearFeatureSelection(): void;
225
- setFeatureIdUnderMouse(feature?: string): void;
226
- setContextMenuFeature(feature?: Feature): void;
227
- setMouseoverExtraInformation(extra?: string): void;
228
- } & {
229
- reload(): Promise<void>;
230
- } & {
231
- trackMenuItems(): MenuItem[];
232
- contextMenuItems(): MenuItem[];
233
- renderProps(): any;
234
- } & {
235
- renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
236
- afterAttach(): void;
237
- }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
238
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
239
- type: import("mobx-state-tree").ISimpleType<string>;
240
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
241
- } & {
242
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
243
- } & {
244
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
245
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
246
- } & {
247
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
248
- key: import("mobx-state-tree").ISimpleType<string>;
249
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
250
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
251
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
252
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
253
- }, {
254
- stopToken: string | undefined;
255
- filled: boolean;
256
- reactElement: React.ReactElement | undefined;
257
- features: Map<string, Feature> | undefined;
258
- layout: any;
259
- status: string;
260
- error: unknown;
261
- message: string | undefined;
262
- maxHeightReached: boolean;
263
- ReactComponent: ({ model, }: {
264
- model: {
265
- error?: unknown;
266
- reload: () => void;
267
- message: React.ReactNode;
268
- filled?: boolean;
269
- status?: string;
270
- reactElement?: React.ReactElement;
271
- };
272
- }) => import("react/jsx-runtime").JSX.Element | undefined;
273
- renderProps: any;
274
- } & {
275
- doReload(): void;
276
- afterAttach(): void;
277
- setStatus(message: string): void;
278
- setLoading(newStopToken: string): void;
279
- setMessage(messageText: string): void;
280
- setRendered(props: import("./models/serverSideRenderedBlock").RenderedProps | undefined): void;
281
- setError(error: unknown): void;
282
- reload(): void;
283
- beforeDestroy(): void;
284
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
285
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
286
- maxFeatureScreenDensity: {
287
- type: string;
288
- description: string;
289
- defaultValue: number;
290
- };
291
- fetchSizeLimit: {
292
- type: string;
293
- defaultValue: number;
294
- description: string;
295
- };
296
- height: {
297
- type: string;
298
- defaultValue: number;
299
- description: string;
300
- };
301
- mouseover: {
302
- type: string;
303
- description: string;
304
- defaultValue: string;
305
- contextVariable: string[];
306
- };
307
- jexlFilters: {
308
- type: string;
309
- description: string;
310
- defaultValue: never[];
311
- };
312
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
313
- }>>, {
314
- type: string;
315
- id: string;
316
- configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
317
- rpcDriverName: string | undefined;
318
- heightPreConfig: number | undefined;
319
- userBpPerPxLimit: number | undefined;
320
- userByteSizeLimit: number | undefined;
321
- }>;
322
- export type BaseLinearDisplayStateModel = typeof BaseLinearDisplay;
323
- export type BaseLinearDisplayModel = Instance<BaseLinearDisplayStateModel>;
324
- export {};