@jbrowse/plugin-linear-genome-view 3.6.2 → 3.6.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/dist/LinearGenomeView/components/RubberbandSpan.js +0 -4
  2. package/dist/LinearGenomeView/components/SearchResultsTable.js +12 -14
  3. package/dist/LinearGenomeView/components/useRangeSelect.js +0 -1
  4. package/dist/LinearGenomeView/model.js +75 -42
  5. package/esm/LinearGenomeView/components/RubberbandSpan.js +0 -4
  6. package/esm/LinearGenomeView/components/SearchResultsTable.js +12 -14
  7. package/esm/LinearGenomeView/components/useRangeSelect.js +0 -1
  8. package/esm/LinearGenomeView/model.js +75 -42
  9. package/package.json +3 -3
package/dist/LinearGenomeView/components/RubberbandSpan.js CHANGED
@@ -20,11 +20,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => {
20
20
  position: 'absolute',
21
21
  zIndex: 830,
22
22
  textAlign: 'center',
23
- },
24
- rubberbandControl: {
25
23
  cursor: 'crosshair',
26
- width: '100%',
27
- minHeight: 8,
28
24
  },
29
25
  rubberbandText: {
30
26
  color: theme.palette.tertiary.contrastText,
package/dist/LinearGenomeView/components/SearchResultsTable.js CHANGED
@@ -5,6 +5,7 @@ const jsx_runtime_1 = require("react/jsx-runtime");
5
5
  const util_1 = require("@jbrowse/core/util");
6
6
  const material_1 = require("@mui/material");
7
7
  const mobx_state_tree_1 = require("mobx-state-tree");
8
+ const searchUtils_1 = require("../../searchUtils");
8
9
  function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, model, handleClose, }) {
9
10
  const session = (0, util_1.getSession)(model);
10
11
  const { pluginManager } = (0, util_1.getEnv)(session);
@@ -26,21 +27,22 @@ function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, mode
26
27
  }
27
28
  return '';
28
29
  }
29
- async function handleClick(location) {
30
+ async function handleClick(result) {
30
31
  var _a;
31
- try {
32
+ if (result.hasLocation()) {
33
+ await (0, searchUtils_1.navToOption)({
34
+ option: result,
35
+ model,
36
+ assemblyName,
37
+ });
38
+ }
39
+ else {
40
+ const location = result.getLabel();
32
41
  const newRegion = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.regions) === null || _a === void 0 ? void 0 : _a.find(region => location === region.refName);
33
42
  if (newRegion) {
34
43
  model.setDisplayedRegions([newRegion]);
35
44
  model.showAllRegions();
36
45
  }
37
- else {
38
- await model.navToLocString(location, assemblyName);
39
- }
40
- }
41
- catch (e) {
42
- console.warn(e);
43
- session.notify(`${e}`, 'warning');
44
46
  }
45
47
  }
46
48
  return ((0, jsx_runtime_1.jsx)(material_1.TableContainer, { component: material_1.Paper, children: (0, jsx_runtime_1.jsxs)(material_1.Table, { children: [(0, jsx_runtime_1.jsx)(material_1.TableHead, { children: (0, jsx_runtime_1.jsxs)(material_1.TableRow, { children: [(0, jsx_runtime_1.jsx)(material_1.TableCell, { children: "Name" }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: "Location" }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: "Track" }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right" })] }) }), (0, jsx_runtime_1.jsx)(material_1.TableBody, { children: searchResults.map(result => {
@@ -60,11 +62,7 @@ function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, mode
60
62
  })
61
63
  : locString }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: getTrackName(result.getTrackId()) || 'N/A' }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: async () => {
62
64
  try {
63
- await handleClick(result.getLocation() || result.getLabel());
64
- const resultTrackId = result.getTrackId();
65
- if (resultTrackId) {
66
- model.showTrack(resultTrackId);
67
- }
65
+ await handleClick(result);
68
66
  }
69
67
  catch (e) {
70
68
  console.error(e);
package/dist/LinearGenomeView/components/useRangeSelect.js CHANGED
@@ -86,7 +86,6 @@ function useRangeSelect(ref, model, shiftOnly) {
86
86
  }
87
87
  function mouseOut() {
88
88
  setGuideX(undefined);
89
- model.setOffsets(undefined, undefined);
90
89
  }
91
90
  function handleClose() {
92
91
  setAnchorPosition(undefined);
package/dist/LinearGenomeView/model.js CHANGED
@@ -654,7 +654,10 @@ function stateModelFactory(pluginManager) {
654
654
  onClick: () => {
655
655
  (0, util_1.getSession)(self).queueDialog(handleClose => [
656
656
  SequenceSearchDialog,
657
- { model: self, handleClose },
657
+ {
658
+ model: self,
659
+ handleClose,
660
+ },
658
661
  ]);
659
662
  },
660
663
  },
@@ -666,7 +669,10 @@ function stateModelFactory(pluginManager) {
666
669
  onClick: () => {
667
670
  (0, util_1.getSession)(self).queueDialog(handleClose => [
668
671
  ExportSvgDialog,
669
- { model: self, handleClose },
672
+ {
673
+ model: self,
674
+ handleClose,
675
+ },
670
676
  ]);
671
677
  },
672
678
  },
@@ -875,17 +881,31 @@ function stateModelFactory(pluginManager) {
875
881
  grow,
876
882
  });
877
883
  if (locations.length === 1) {
878
- const loc = locations[0];
879
- const { reversed, parentRegion, start, end } = loc;
880
- self.setDisplayedRegions([{ reversed, ...parentRegion }]);
884
+ const location = locations[0];
885
+ const { reversed, parentRegion, start, end } = location;
886
+ self.setDisplayedRegions([
887
+ {
888
+ reversed,
889
+ ...parentRegion,
890
+ },
891
+ ]);
881
892
  this.navTo({
882
- ...loc,
893
+ ...location,
883
894
  start: (0, util_1.clamp)(start !== null && start !== void 0 ? start : 0, 0, parentRegion.end),
884
895
  end: (0, util_1.clamp)(end !== null && end !== void 0 ? end : parentRegion.end, 0, parentRegion.end),
885
896
  });
886
897
  }
887
898
  else {
888
- self.setDisplayedRegions(locations.map(r => (r.start === undefined ? r.parentRegion : r)));
899
+ self.setDisplayedRegions(locations.map(location => {
900
+ const { start, end } = location;
901
+ return start === undefined || end === undefined
902
+ ? location.parentRegion
903
+ : {
904
+ ...location,
905
+ start,
906
+ end,
907
+ };
908
+ }));
889
909
  self.showAllRegions();
890
910
  }
891
911
  },
@@ -896,50 +916,62 @@ function stateModelFactory(pluginManager) {
896
916
  if (locations.some(l => l.start !== undefined && l.end !== undefined && l.start > l.end)) {
897
917
  throw new Error('found start greater than end');
898
918
  }
899
- const f1 = locations.at(0);
900
- const f2 = locations.at(-1);
901
- if (!f1 || !f2) {
919
+ const firstLocation = locations.at(0);
920
+ const lastLocation = locations.at(-1);
921
+ if (!firstLocation || !lastLocation) {
902
922
  return;
903
923
  }
904
- const a = self.assemblyNames[0];
924
+ const defaultAssemblyName = self.assemblyNames[0];
905
925
  const { assemblyManager } = (0, util_1.getSession)(self);
906
- const assembly1 = assemblyManager.get(f1.assemblyName || a);
907
- const assembly2 = assemblyManager.get(f2.assemblyName || a);
908
- const ref1 = (assembly1 === null || assembly1 === void 0 ? void 0 : assembly1.getCanonicalRefName(f1.refName)) || f1.refName;
909
- const ref2 = (assembly2 === null || assembly2 === void 0 ? void 0 : assembly2.getCanonicalRefName(f2.refName)) || f2.refName;
910
- const r1 = self.displayedRegions.find(r => r.refName === ref1);
911
- const r2 = (0, util_1.findLast)(self.displayedRegions, r => r.refName === ref2);
912
- if (!r1) {
913
- throw new Error(`could not find a region with refName "${ref1}"`);
926
+ const firstAssembly = assemblyManager.get(firstLocation.assemblyName || defaultAssemblyName);
927
+ const firstRefName = (firstAssembly === null || firstAssembly === void 0 ? void 0 : firstAssembly.getCanonicalRefName(firstLocation.refName)) ||
928
+ firstLocation.refName;
929
+ const firstRegion = self.displayedRegions.find(r => r.refName === firstRefName);
930
+ const lastAssembly = assemblyManager.get(lastLocation.assemblyName || defaultAssemblyName);
931
+ const lastRefName = (lastAssembly === null || lastAssembly === void 0 ? void 0 : lastAssembly.getCanonicalRefName(lastLocation.refName)) ||
932
+ lastLocation.refName;
933
+ const lastRegion = (0, util_1.findLast)(self.displayedRegions, r => r.refName === lastRefName);
934
+ if (!firstRegion) {
935
+ throw new Error(`could not find a region with refName "${firstRefName}"`);
914
936
  }
915
- if (!r2) {
916
- throw new Error(`could not find a region with refName "${ref2}"`);
937
+ if (!lastRegion) {
938
+ throw new Error(`could not find a region with refName "${lastRefName}"`);
917
939
  }
918
- const s1 = f1.start === undefined ? r1.start : f1.start;
919
- const e1 = f1.end === undefined ? r1.end : f1.end;
920
- const s2 = f2.start === undefined ? r2.start : f2.start;
921
- const e2 = f2.end === undefined ? r2.end : f2.end;
922
- const index = self.displayedRegions.findIndex(r => ref1 === r.refName &&
923
- s1 >= r.start &&
924
- s1 <= r.end &&
925
- e1 <= r.end &&
926
- e1 >= r.start);
927
- const index2 = self.displayedRegions.findIndex(r => ref2 === r.refName &&
928
- s2 >= r.start &&
929
- s2 <= r.end &&
930
- e2 <= r.end &&
931
- e2 >= r.start);
932
- if (index === -1 || index2 === -1) {
940
+ const firstStart = firstLocation.start === undefined
941
+ ? firstRegion.start
942
+ : firstLocation.start;
943
+ const firstEnd = firstLocation.end === undefined ? firstRegion.end : firstLocation.end;
944
+ const lastStart = lastLocation.start === undefined
945
+ ? lastRegion.start
946
+ : lastLocation.start;
947
+ const lastEnd = lastLocation.end === undefined ? lastRegion.end : lastLocation.end;
948
+ const firstIndex = self.displayedRegions.findIndex(r => firstRefName === r.refName &&
949
+ firstStart >= r.start &&
950
+ firstStart <= r.end &&
951
+ firstEnd <= r.end &&
952
+ firstEnd >= r.start);
953
+ const lastIndex = self.displayedRegions.findIndex(r => lastRefName === r.refName &&
954
+ lastStart >= r.start &&
955
+ lastStart <= r.end &&
956
+ lastEnd <= r.end &&
957
+ lastEnd >= r.start);
958
+ if (firstIndex === -1 || lastIndex === -1) {
933
959
  throw new Error(`could not find a region that contained "${locations.map(l => (0, util_1.assembleLocString)(l))}"`);
934
960
  }
935
- const sd = self.displayedRegions[index];
936
- const ed = self.displayedRegions[index2];
961
+ const startDisplayedRegion = self.displayedRegions[firstIndex];
962
+ const endDisplayedRegion = self.displayedRegions[lastIndex];
963
+ const startOffset = startDisplayedRegion.reversed
964
+ ? startDisplayedRegion.end - firstEnd
965
+ : firstStart - startDisplayedRegion.start;
966
+ const endOffset = endDisplayedRegion.reversed
967
+ ? endDisplayedRegion.end - lastStart
968
+ : lastEnd - endDisplayedRegion.start;
937
969
  this.moveTo({
938
- index,
939
- offset: sd.reversed ? sd.end - e1 : s1 - sd.start,
970
+ index: firstIndex,
971
+ offset: startOffset,
940
972
  }, {
941
- index: index2,
942
- offset: ed.reversed ? ed.end - s2 : e2 - ed.start,
973
+ index: lastIndex,
974
+ offset: endOffset,
943
975
  });
944
976
  },
945
977
  }))
@@ -1023,6 +1055,7 @@ function stateModelFactory(pluginManager) {
1023
1055
  self
1024
1056
  .navToLocString(init.loc, init.assembly)
1025
1057
  .catch((e) => {
1058
+ console.error(init, e);
1026
1059
  (0, util_1.getSession)(self).notifyError(`${e}`, e);
1027
1060
  });
1028
1061
  (_a = init.tracks) === null || _a === void 0 ? void 0 : _a.map(t => self.showTrack(t));
package/esm/LinearGenomeView/components/RubberbandSpan.js CHANGED
@@ -14,11 +14,7 @@ const useStyles = makeStyles()(theme => {
14
14
  position: 'absolute',
15
15
  zIndex: 830,
16
16
  textAlign: 'center',
17
- },
18
- rubberbandControl: {
19
17
  cursor: 'crosshair',
20
- width: '100%',
21
- minHeight: 8,
22
18
  },
23
19
  rubberbandText: {
24
20
  color: theme.palette.tertiary.contrastText,
package/esm/LinearGenomeView/components/SearchResultsTable.js CHANGED
@@ -2,6 +2,7 @@ import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
2
2
  import { assembleLocString, getEnv, getSession, parseLocString, } from '@jbrowse/core/util';
3
3
  import { Button, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, } from '@mui/material';
4
4
  import { getRoot, resolveIdentifier } from 'mobx-state-tree';
5
+ import { navToOption } from '../../searchUtils';
5
6
  export default function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, model, handleClose, }) {
6
7
  const session = getSession(model);
7
8
  const { pluginManager } = getEnv(session);
@@ -23,21 +24,22 @@ export default function SearchResultsTable({ searchResults, assemblyName: optAss
23
24
  }
24
25
  return '';
25
26
  }
26
- async function handleClick(location) {
27
+ async function handleClick(result) {
27
28
  var _a;
28
- try {
29
+ if (result.hasLocation()) {
30
+ await navToOption({
31
+ option: result,
32
+ model,
33
+ assemblyName,
34
+ });
35
+ }
36
+ else {
37
+ const location = result.getLabel();
29
38
  const newRegion = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.regions) === null || _a === void 0 ? void 0 : _a.find(region => location === region.refName);
30
39
  if (newRegion) {
31
40
  model.setDisplayedRegions([newRegion]);
32
41
  model.showAllRegions();
33
42
  }
34
- else {
35
- await model.navToLocString(location, assemblyName);
36
- }
37
- }
38
- catch (e) {
39
- console.warn(e);
40
- session.notify(`${e}`, 'warning');
41
43
  }
42
44
  }
43
45
  return (_jsx(TableContainer, { component: Paper, children: _jsxs(Table, { children: [_jsx(TableHead, { children: _jsxs(TableRow, { children: [_jsx(TableCell, { children: "Name" }), _jsx(TableCell, { align: "right", children: "Location" }), _jsx(TableCell, { align: "right", children: "Track" }), _jsx(TableCell, { align: "right" })] }) }), _jsx(TableBody, { children: searchResults.map(result => {
@@ -57,11 +59,7 @@ export default function SearchResultsTable({ searchResults, assemblyName: optAss
57
59
  })
58
60
  : locString }), _jsx(TableCell, { align: "right", children: getTrackName(result.getTrackId()) || 'N/A' }), _jsx(TableCell, { align: "right", children: _jsx(Button, { onClick: async () => {
59
61
  try {
60
- await handleClick(result.getLocation() || result.getLabel());
61
- const resultTrackId = result.getTrackId();
62
- if (resultTrackId) {
63
- model.showTrack(resultTrackId);
64
- }
62
+ await handleClick(result);
65
63
  }
66
64
  catch (e) {
67
65
  console.error(e);
package/esm/LinearGenomeView/components/useRangeSelect.js CHANGED
@@ -83,7 +83,6 @@ export function useRangeSelect(ref, model, shiftOnly) {
83
83
  }
84
84
  function mouseOut() {
85
85
  setGuideX(undefined);
86
- model.setOffsets(undefined, undefined);
87
86
  }
88
87
  function handleClose() {
89
88
  setAnchorPosition(undefined);
package/esm/LinearGenomeView/model.js CHANGED
@@ -614,7 +614,10 @@ export function stateModelFactory(pluginManager) {
614
614
  onClick: () => {
615
615
  getSession(self).queueDialog(handleClose => [
616
616
  SequenceSearchDialog,
617
- { model: self, handleClose },
617
+ {
618
+ model: self,
619
+ handleClose,
620
+ },
618
621
  ]);
619
622
  },
620
623
  },
@@ -626,7 +629,10 @@ export function stateModelFactory(pluginManager) {
626
629
  onClick: () => {
627
630
  getSession(self).queueDialog(handleClose => [
628
631
  ExportSvgDialog,
629
- { model: self, handleClose },
632
+ {
633
+ model: self,
634
+ handleClose,
635
+ },
630
636
  ]);
631
637
  },
632
638
  },
@@ -835,17 +841,31 @@ export function stateModelFactory(pluginManager) {
835
841
  grow,
836
842
  });
837
843
  if (locations.length === 1) {
838
- const loc = locations[0];
839
- const { reversed, parentRegion, start, end } = loc;
840
- self.setDisplayedRegions([{ reversed, ...parentRegion }]);
844
+ const location = locations[0];
845
+ const { reversed, parentRegion, start, end } = location;
846
+ self.setDisplayedRegions([
847
+ {
848
+ reversed,
849
+ ...parentRegion,
850
+ },
851
+ ]);
841
852
  this.navTo({
842
- ...loc,
853
+ ...location,
843
854
  start: clamp(start !== null && start !== void 0 ? start : 0, 0, parentRegion.end),
844
855
  end: clamp(end !== null && end !== void 0 ? end : parentRegion.end, 0, parentRegion.end),
845
856
  });
846
857
  }
847
858
  else {
848
- self.setDisplayedRegions(locations.map(r => (r.start === undefined ? r.parentRegion : r)));
859
+ self.setDisplayedRegions(locations.map(location => {
860
+ const { start, end } = location;
861
+ return start === undefined || end === undefined
862
+ ? location.parentRegion
863
+ : {
864
+ ...location,
865
+ start,
866
+ end,
867
+ };
868
+ }));
849
869
  self.showAllRegions();
850
870
  }
851
871
  },
@@ -856,50 +876,62 @@ export function stateModelFactory(pluginManager) {
856
876
  if (locations.some(l => l.start !== undefined && l.end !== undefined && l.start > l.end)) {
857
877
  throw new Error('found start greater than end');
858
878
  }
859
- const f1 = locations.at(0);
860
- const f2 = locations.at(-1);
861
- if (!f1 || !f2) {
879
+ const firstLocation = locations.at(0);
880
+ const lastLocation = locations.at(-1);
881
+ if (!firstLocation || !lastLocation) {
862
882
  return;
863
883
  }
864
- const a = self.assemblyNames[0];
884
+ const defaultAssemblyName = self.assemblyNames[0];
865
885
  const { assemblyManager } = getSession(self);
866
- const assembly1 = assemblyManager.get(f1.assemblyName || a);
867
- const assembly2 = assemblyManager.get(f2.assemblyName || a);
868
- const ref1 = (assembly1 === null || assembly1 === void 0 ? void 0 : assembly1.getCanonicalRefName(f1.refName)) || f1.refName;
869
- const ref2 = (assembly2 === null || assembly2 === void 0 ? void 0 : assembly2.getCanonicalRefName(f2.refName)) || f2.refName;
870
- const r1 = self.displayedRegions.find(r => r.refName === ref1);
871
- const r2 = findLast(self.displayedRegions, r => r.refName === ref2);
872
- if (!r1) {
873
- throw new Error(`could not find a region with refName "${ref1}"`);
886
+ const firstAssembly = assemblyManager.get(firstLocation.assemblyName || defaultAssemblyName);
887
+ const firstRefName = (firstAssembly === null || firstAssembly === void 0 ? void 0 : firstAssembly.getCanonicalRefName(firstLocation.refName)) ||
888
+ firstLocation.refName;
889
+ const firstRegion = self.displayedRegions.find(r => r.refName === firstRefName);
890
+ const lastAssembly = assemblyManager.get(lastLocation.assemblyName || defaultAssemblyName);
891
+ const lastRefName = (lastAssembly === null || lastAssembly === void 0 ? void 0 : lastAssembly.getCanonicalRefName(lastLocation.refName)) ||
892
+ lastLocation.refName;
893
+ const lastRegion = findLast(self.displayedRegions, r => r.refName === lastRefName);
894
+ if (!firstRegion) {
895
+ throw new Error(`could not find a region with refName "${firstRefName}"`);
874
896
  }
875
- if (!r2) {
876
- throw new Error(`could not find a region with refName "${ref2}"`);
897
+ if (!lastRegion) {
898
+ throw new Error(`could not find a region with refName "${lastRefName}"`);
877
899
  }
878
- const s1 = f1.start === undefined ? r1.start : f1.start;
879
- const e1 = f1.end === undefined ? r1.end : f1.end;
880
- const s2 = f2.start === undefined ? r2.start : f2.start;
881
- const e2 = f2.end === undefined ? r2.end : f2.end;
882
- const index = self.displayedRegions.findIndex(r => ref1 === r.refName &&
883
- s1 >= r.start &&
884
- s1 <= r.end &&
885
- e1 <= r.end &&
886
- e1 >= r.start);
887
- const index2 = self.displayedRegions.findIndex(r => ref2 === r.refName &&
888
- s2 >= r.start &&
889
- s2 <= r.end &&
890
- e2 <= r.end &&
891
- e2 >= r.start);
892
- if (index === -1 || index2 === -1) {
900
+ const firstStart = firstLocation.start === undefined
901
+ ? firstRegion.start
902
+ : firstLocation.start;
903
+ const firstEnd = firstLocation.end === undefined ? firstRegion.end : firstLocation.end;
904
+ const lastStart = lastLocation.start === undefined
905
+ ? lastRegion.start
906
+ : lastLocation.start;
907
+ const lastEnd = lastLocation.end === undefined ? lastRegion.end : lastLocation.end;
908
+ const firstIndex = self.displayedRegions.findIndex(r => firstRefName === r.refName &&
909
+ firstStart >= r.start &&
910
+ firstStart <= r.end &&
911
+ firstEnd <= r.end &&
912
+ firstEnd >= r.start);
913
+ const lastIndex = self.displayedRegions.findIndex(r => lastRefName === r.refName &&
914
+ lastStart >= r.start &&
915
+ lastStart <= r.end &&
916
+ lastEnd <= r.end &&
917
+ lastEnd >= r.start);
918
+ if (firstIndex === -1 || lastIndex === -1) {
893
919
  throw new Error(`could not find a region that contained "${locations.map(l => assembleLocString(l))}"`);
894
920
  }
895
- const sd = self.displayedRegions[index];
896
- const ed = self.displayedRegions[index2];
921
+ const startDisplayedRegion = self.displayedRegions[firstIndex];
922
+ const endDisplayedRegion = self.displayedRegions[lastIndex];
923
+ const startOffset = startDisplayedRegion.reversed
924
+ ? startDisplayedRegion.end - firstEnd
925
+ : firstStart - startDisplayedRegion.start;
926
+ const endOffset = endDisplayedRegion.reversed
927
+ ? endDisplayedRegion.end - lastStart
928
+ : lastEnd - endDisplayedRegion.start;
897
929
  this.moveTo({
898
- index,
899
- offset: sd.reversed ? sd.end - e1 : s1 - sd.start,
930
+ index: firstIndex,
931
+ offset: startOffset,
900
932
  }, {
901
- index: index2,
902
- offset: ed.reversed ? ed.end - s2 : e2 - ed.start,
933
+ index: lastIndex,
934
+ offset: endOffset,
903
935
  });
904
936
  },
905
937
  }))
@@ -983,6 +1015,7 @@ export function stateModelFactory(pluginManager) {
983
1015
  self
984
1016
  .navToLocString(init.loc, init.assembly)
985
1017
  .catch((e) => {
1018
+ console.error(init, e);
986
1019
  getSession(self).notifyError(`${e}`, e);
987
1020
  });
988
1021
  (_a = init.tracks) === null || _a === void 0 ? void 0 : _a.map(t => self.showTrack(t));
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-linear-genome-view",
3
- "version": "3.6.2",
3
+ "version": "3.6.4",
4
4
  "description": "JBrowse 2 linear genome view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -38,7 +38,7 @@
38
38
  "useSrc": "node ../../scripts/useSrc.js"
39
39
  },
40
40
  "dependencies": {
41
- "@jbrowse/core": "^3.6.2",
41
+ "@jbrowse/core": "^3.6.4",
42
42
  "@mui/icons-material": "^7.0.0",
43
43
  "@mui/material": "^7.0.0",
44
44
  "@types/file-saver": "^2.0.1",
@@ -57,5 +57,5 @@
57
57
  "access": "public"
58
58
  },
59
59
  "module": "esm/index.js",
60
- "gitHead": "2a2c52face5f1b8fe899f48d5903e5c5f06dba63"
60
+ "gitHead": "3db8e50ce2bd9c081efbf6c2e7ae5f342380a25a"
61
61
  }