@jbrowse/plugin-linear-genome-view 3.2.0 → 3.4.0

package/esm/LinearGenomeView/util.js

@@ -50,7 +50,7 @@ export function makeTicks(start, end, bpPerPx, emitMajor = true, emitMinor = tru
     }
     return ticks;
 }
-export async function generateLocations(regions, assemblyManager, assemblyName) {
+export async function generateLocations({ regions, assemblyManager, assemblyName, grow, }) {
     return Promise.all(regions.map(async (region) => {
         const asmName = region.assemblyName || assemblyName;
         if (!asmName) {
@@ -73,11 +73,25 @@ export async function generateLocations(regions, assemblyManager, assemblyName)
         if (!parentRegion) {
             throw new Error(`Could not find refName ${refName} in ${asmName}`);
         }
-        return {
-            ...region,
-            assemblyName: asmName,
-            parentRegion,
-        };
+        const { start, end } = region;
+        if (grow && start && end) {
+            const len = end - start;
+            const margin = len * grow;
+            return {
+                ...region,
+                start: Math.max(0, start - margin),
+                end: end + margin,
+                assemblyName: asmName,
+                parentRegion,
+            };
+        }
+        else {
+            return {
+                ...region,
+                assemblyName: asmName,
+                parentRegion,
+            };
+        }
     }));
 }
 export function parseLocStrings(input, assemblyName, isValidRefName) {

package/esm/index.d.ts

@@ -195,7 +195,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
         } & {
             addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
             deleteBlock(key: string): void;
-            selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+            selectFeature(feature: import("@jbrowse/core/util").Feature): Promise<void>;
             navToFeature(feature: import("@jbrowse/core/util").Feature): void;
             clearFeatureSelection(): void;
             setFeatureIdUnderMouse(feature?: string): void;

package/esm/searchUtils.js

@@ -4,7 +4,7 @@ export async function navToOption({ option, model, assemblyName, }) {
     const location = option.getLocation();
     const trackId = option.getTrackId();
     if (location) {
-        await model.navToLocString(location, assemblyName);
+        await model.navToLocString(location, assemblyName, 0.2);
         if (trackId) {
             model.showTrack(trackId);
         }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "3.2.0",
+  "version": "3.4.0",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -38,9 +38,9 @@
     "useSrc": "node ../../scripts/useSrc.js"
   },
   "dependencies": {
-    "@jbrowse/core": "^3.2.0",
-    "@mui/icons-material": "^6.0.0",
-    "@mui/material": "^6.0.0",
+    "@jbrowse/core": "^3.4.0",
+    "@mui/icons-material": "^7.0.0",
+    "@mui/material": "^7.0.0",
     "@types/file-saver": "^2.0.1",
     "copy-to-clipboard": "^3.3.1",
     "file-saver": "^2.0.0",
@@ -58,5 +58,5 @@
     "access": "public"
   },
   "module": "esm/index.js",
-  "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
+  "gitHead": "a9f1ac35fc2dd810bae92cdaf1fc19995bee4413"
 }