@jbrowse/plugin-linear-genome-view 2.9.0 → 2.10.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/Tooltip.js +18 -50
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +4 -16
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +8 -1
- package/dist/LinearBareDisplay/model.d.ts +8 -11
- package/dist/LinearBareDisplay/model.js +2 -1
- package/dist/LinearBasicDisplay/model.d.ts +30 -33
- package/dist/LinearBasicDisplay/model.js +3 -0
- package/dist/LinearGenomeView/components/Cytobands.d.ts +18 -6
- package/dist/LinearGenomeView/components/Cytobands.js +8 -2
- package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +0 -8
- package/dist/LinearGenomeView/components/OverviewScalebar.js +23 -55
- package/dist/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +9 -0
- package/dist/LinearGenomeView/components/OverviewScalebarPolygon.js +46 -0
- package/dist/LinearGenomeView/components/TracksContainer.js +1 -1
- package/dist/LinearGenomeView/model.d.ts +6 -1
- package/dist/LinearGenomeView/model.js +3 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +2 -2
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +0 -7
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +11 -13
- package/dist/LinearGenomeView/svgcomponents/util.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/util.js +9 -0
- package/dist/index.d.ts +110 -37
- package/dist/index.js +3 -2
- package/esm/BaseLinearDisplay/components/Tooltip.js +16 -28
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +4 -16
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +8 -1
- package/esm/LinearBareDisplay/model.d.ts +8 -11
- package/esm/LinearBareDisplay/model.js +2 -1
- package/esm/LinearBasicDisplay/model.d.ts +30 -33
- package/esm/LinearBasicDisplay/model.js +3 -0
- package/esm/LinearGenomeView/components/Cytobands.d.ts +18 -6
- package/esm/LinearGenomeView/components/Cytobands.js +8 -2
- package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +0 -8
- package/esm/LinearGenomeView/components/OverviewScalebar.js +23 -53
- package/esm/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +9 -0
- package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +41 -0
- package/esm/LinearGenomeView/components/TracksContainer.js +1 -1
- package/esm/LinearGenomeView/model.d.ts +6 -1
- package/esm/LinearGenomeView/model.js +3 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +2 -2
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +0 -7
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +9 -10
- package/esm/LinearGenomeView/svgcomponents/util.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/util.js +5 -0
- package/esm/index.d.ts +110 -37
- package/esm/index.js +2 -1
- package/package.json +4 -6
package/esm/index.d.ts
CHANGED
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@@ -1080,11 +1080,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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[x: string]: unknown;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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@@ -1136,11 +1142,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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[x: string]: unknown;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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@@ -1387,11 +1399,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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@@ -1443,11 +1461,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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@@ -1704,11 +1728,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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@@ -1760,11 +1790,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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load(): Promise<void>;
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} & {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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@@ -2691,11 +2757,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
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|
|
2691
2757
|
load(): Promise<void>;
|
|
2692
2758
|
loadPre(): Promise<void>;
|
|
2693
2759
|
} & {
|
|
2694
|
-
getAdapterMapEntry(adapterConf:
|
|
2695
|
-
|
|
2760
|
+
getAdapterMapEntry(adapterConf: {
|
|
2761
|
+
[x: string]: unknown;
|
|
2762
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2763
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2764
|
+
[x: string]: unknown;
|
|
2765
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2696
2766
|
[x: string]: string | undefined;
|
|
2697
2767
|
}>;
|
|
2698
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2768
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2769
|
+
[x: string]: unknown;
|
|
2770
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2699
2771
|
[x: string]: string | undefined;
|
|
2700
2772
|
}>;
|
|
2701
2773
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -2761,5 +2833,6 @@ export type { ExportSvgDisplayOptions, BaseLinearDisplayModel, BlockModel, } fro
|
|
|
2761
2833
|
export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
|
|
2762
2834
|
export { baseLinearDisplayConfigSchema, BaseLinearDisplay, BlockMsg, BaseLinearDisplayComponent, TrackHeightMixin, FeatureDensityMixin, TooLargeMessage, } from './BaseLinearDisplay';
|
|
2763
2835
|
export { type LinearGenomeViewModel, type LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
|
|
2764
|
-
export { renderToSvg, SVGTracks,
|
|
2836
|
+
export { renderToSvg, SVGTracks, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
|
|
2837
|
+
export { totalHeight } from './LinearGenomeView/svgcomponents/util';
|
|
2765
2838
|
export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
|
package/esm/index.js
CHANGED
|
@@ -65,5 +65,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
65
65
|
export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
|
|
66
66
|
export { baseLinearDisplayConfigSchema, BaseLinearDisplay, BlockMsg, BaseLinearDisplayComponent, TrackHeightMixin, FeatureDensityMixin, TooLargeMessage, } from './BaseLinearDisplay';
|
|
67
67
|
export { RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
|
|
68
|
-
export { renderToSvg, SVGTracks,
|
|
68
|
+
export { renderToSvg, SVGTracks, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
|
|
69
|
+
export { totalHeight } from './LinearGenomeView/svgcomponents/util';
|
|
69
70
|
export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-linear-genome-view",
|
|
3
|
-
"version": "2.
|
|
3
|
+
"version": "2.10.1",
|
|
4
4
|
"description": "JBrowse 2 linear genome view",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -38,18 +38,16 @@
|
|
|
38
38
|
"useSrc": "node ../../scripts/useSrc.js"
|
|
39
39
|
},
|
|
40
40
|
"dependencies": {
|
|
41
|
+
"@floating-ui/react": "^0.26.3",
|
|
41
42
|
"@mui/icons-material": "^5.0.1",
|
|
42
|
-
"@popperjs/core": "^2.11.0",
|
|
43
43
|
"@types/file-saver": "^2.0.1",
|
|
44
44
|
"@types/normalize-wheel": "^1.0.0",
|
|
45
45
|
"clone": "^2.1.2",
|
|
46
|
-
"clsx": "^2.0.0",
|
|
47
46
|
"copy-to-clipboard": "^3.3.1",
|
|
48
47
|
"file-saver": "^2.0.0",
|
|
49
48
|
"material-ui-popup-state": "^5.0.0",
|
|
50
49
|
"normalize-wheel": "^1.0.1",
|
|
51
|
-
"react-error-boundary": "^4.0.3"
|
|
52
|
-
"react-popper": "^2.0.0"
|
|
50
|
+
"react-error-boundary": "^4.0.3"
|
|
53
51
|
},
|
|
54
52
|
"peerDependencies": {
|
|
55
53
|
"@jbrowse/core": "^2.0.0",
|
|
@@ -65,5 +63,5 @@
|
|
|
65
63
|
"access": "public"
|
|
66
64
|
},
|
|
67
65
|
"module": "esm/index.js",
|
|
68
|
-
"gitHead": "
|
|
66
|
+
"gitHead": "442b5f87efddfdf4ccf520b4d9dd01ddd370cb07"
|
|
69
67
|
}
|