@jbrowse/plugin-linear-genome-view 2.9.0 → 2.10.0

package/esm/LinearBasicDisplay/model.d.ts

@@ -7,6 +7,9 @@ import { Instance } from 'mobx-state-tree';
  * #category display
  * used by `FeatureTrack`, has simple settings like "show/hide feature labels",
  * etc.
+ *
+ * extends
+ * - [BaseLinearDisplay](../baselineardisplay)
  */
 declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -34,7 +37,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined;
+        renderInProgress: AbortController | undefined; /**
+         * #property
+         */
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
@@ -52,9 +57,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         afterAttach(): void;
         setStatus(message: string): void;
         setLoading(abortController: AbortController): void;
-        setMessage(messageText: string): void; /**
-         * #method
-         */
+        setMessage(messageText: string): void;
         setRendered(props: {
             reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
             features: Map<string, import("@jbrowse/core/util").Feature>;
@@ -81,15 +84,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             type: string;
             defaultValue: number;
             description: string;
-        }; /**
-         * #property
-         */
+        };
         mouseover: {
             type: string;
             description: string;
-            defaultValue: string; /**
-             * #property
-             */
+            defaultValue: string;
             contextVariable: string[];
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
@@ -127,9 +126,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         model: {
             id: string;
             type: string;
-            rpcDriverName: string | undefined; /**
-             * #property
-             */
+            rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
@@ -160,13 +157,14 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
-            rendererTypeName: string; /**
-             * #action
-             */
+            rendererTypeName: string;
             error: unknown;
             message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
+    /**
+     * #action
+     */
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
@@ -195,10 +193,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
 } & {
     readonly currentBytesRequested: number;
     readonly currentFeatureScreenDensity: number;
-    readonly maxFeatureScreenDensity: any;
-    readonly featureDensityStatsReady: boolean; /**
+    /**
      * #getter
      */
+    readonly maxFeatureScreenDensity: any;
+    readonly featureDensityStatsReady: boolean;
     readonly maxAllowableBytes: number;
 } & {
     afterAttach(): void;
@@ -219,9 +218,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
 } & {
-    readonly blockType: "dynamicBlocks" | "staticBlocks"; /**
-     * #getter
-     */
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;
@@ -278,7 +275,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: unknown): any; /**
+         * #property
+         */
     } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
 } & {
     /**
@@ -305,7 +304,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         config: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: unknown): any; /**
+             * #property
+             */
         } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
     };
     /**
@@ -340,7 +341,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined;
+        renderInProgress: AbortController | undefined; /**
+         * #property
+         */
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
@@ -358,9 +361,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         afterAttach(): void;
         setStatus(message: string): void;
         setLoading(abortController: AbortController): void;
-        setMessage(messageText: string): void; /**
-         * #method
-         */
+        setMessage(messageText: string): void;
         setRendered(props: {
             reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
             features: Map<string, import("@jbrowse/core/util").Feature>;
@@ -387,15 +388,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             type: string;
             defaultValue: number;
             description: string;
-        }; /**
-         * #property
-         */
+        };
         mouseover: {
             type: string;
             description: string;
-            defaultValue: string; /**
-             * #property
-             */
+            defaultValue: string;
             contextVariable: string[];
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;

package/esm/LinearBasicDisplay/model.js

@@ -12,6 +12,9 @@ const SetMaxHeightDlg = lazy(() => import('./components/SetMaxHeight'));
  * #category display
  * used by `FeatureTrack`, has simple settings like "show/hide feature labels",
  * etc.
+ *
+ * extends
+ * - [BaseLinearDisplay](../baselineardisplay)
  */
 function stateModelFactory(configSchema) {
     return types

package/esm/LinearGenomeView/components/Cytobands.d.ts

@@ -53,11 +53,17 @@ declare const Cytobands: ({ overview, block, assembly, }: {
         load(): Promise<void>;
         loadPre(): Promise<void>;
     } & {
-        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+        getAdapterMapEntry(adapterConf: {
+            [x: string]: unknown;
+        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+        getRefNameMapForAdapter(adapterConf: {
+            [x: string]: unknown;
+        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
             [x: string]: string | undefined;
         }>;
-        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+        getReverseRefNameMapForAdapter(adapterConf: {
+            [x: string]: unknown;
+        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
             [x: string]: string | undefined;
         }>;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -109,11 +115,17 @@ declare const Cytobands: ({ overview, block, assembly, }: {
         load(): Promise<void>;
         loadPre(): Promise<void>;
     } & {
-        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+        getAdapterMapEntry(adapterConf: {
+            [x: string]: unknown;
+        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+        getRefNameMapForAdapter(adapterConf: {
+            [x: string]: unknown;
+        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
             [x: string]: string | undefined;
         }>;
-        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+        getReverseRefNameMapForAdapter(adapterConf: {
+            [x: string]: unknown;
+        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
             [x: string]: string | undefined;
         }>;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;

package/esm/LinearGenomeView/components/Cytobands.js

@@ -66,10 +66,16 @@ const Cytobands = observer(function ({ overview, block, assembly, }) {
         const c = colorMap[type];
         if (type === 'acen' && !centromereSeen) {
             centromereSeen = true; // the next acen entry is drawn with different right triangle
-            return React.createElement("polygon", { key: k, points: leftTriangle(s, 0, w, h), fill: c });
+            const tri = reversed
+                ? rightTriangle(s - w, 0, w, h)
+                : leftTriangle(s, 0, w, h);
+            return React.createElement("polygon", { key: k, points: tri, fill: c });
         }
         else if (type === 'acen' && centromereSeen) {
-            return React.createElement("polygon", { key: k, points: rightTriangle(s, 0, w, h), fill: c });
+            const tri = reversed
+                ? leftTriangle(s - w, 0, w, h)
+                : rightTriangle(s, 0, w, h);
+            return React.createElement("polygon", { key: k, points: tri, fill: c });
         }
         else if (lcap === index) {
             return React.createElement("path", { key: k, d: leftRoundedRect(l, 0, w, h, 8), fill: c });

package/esm/LinearGenomeView/components/TracksContainer.js

@@ -2,6 +2,7 @@ import React, { useRef } from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { Menu } from '@jbrowse/core/ui';
+import { getEnv } from '@jbrowse/core/util';
 // local utils
 import { SCALE_BAR_HEIGHT } from '..';
 import { useSideScroll, useRangeSelect, useWheelScroll } from './hooks';
@@ -12,7 +13,6 @@ import Gridlines from './Gridlines';
 import CenterLine from './CenterLine';
 import VerticalGuide from './VerticalGuide';
 import RubberbandSpan from './RubberbandSpan';
-import { getEnv } from '@jbrowse/core/util';
 const useStyles = makeStyles()({
     tracksContainer: {
         position: 'relative',

package/esm/LinearGenomeView/model.d.ts

@@ -21,7 +21,9 @@ export interface BpOffset {
 export interface ExportSvgOptions {
     rasterizeLayers?: boolean;
     filename?: string;
-    Wrapper?: React.FC<any>;
+    Wrapper?: React.FC<{
+        children: React.ReactNode;
+    }>;
     fontSize?: number;
     rulerHeight?: number;
     textHeight?: number;
@@ -47,6 +49,9 @@ export declare const WIDGET_HEIGHT = 32;
 /**
  * #stateModel LinearGenomeView
  * #category view
+ *
+ * extends
+ * - [BaseViewModel](../baseviewmodel)
  */
 export declare function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;

package/esm/LinearGenomeView/model.js

@@ -54,6 +54,9 @@ export const WIDGET_HEIGHT = 32;
 /**
  * #stateModel LinearGenomeView
  * #category view
+ *
+ * extends
+ * - [BaseViewModel](../baseviewmodel)
  */
 export function stateModelFactory(pluginManager) {
     return types

package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts

@@ -1,12 +1,5 @@
 import { LinearGenomeViewModel, ExportSvgOptions } from '..';
 type LGV = LinearGenomeViewModel;
-interface Display {
-    height: number;
-}
-interface Track {
-    displays: Display[];
-}
-export declare function totalHeight(tracks: Track[], textHeight: number, trackLabels: string): number;
 export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
 export { default as SVGRuler } from './SVGRuler';
 export { default as SVGTracks } from './SVGTracks';

package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js

@@ -1,25 +1,24 @@
 /* eslint-disable react-refresh/only-export-components */
 import React from 'react';
-import { renderToStaticMarkup } from 'react-dom/server';
 import { when } from 'mobx';
-import { getSession, max, measureText, sum } from '@jbrowse/core/util';
+import { getSession, max, measureText, renderToStaticMarkup, } from '@jbrowse/core/util';
 import { ThemeProvider } from '@mui/material';
 import { createJBrowseTheme } from '@jbrowse/core/ui';
+import { getTrackName } from '@jbrowse/core/util/tracks';
+import { getRoot } from 'mobx-state-tree';
 import SVGBackground from './SVGBackground';
 import SVGTracks from './SVGTracks';
 import SVGHeader from './SVGHeader';
-import { getTrackName } from '@jbrowse/core/util/tracks';
-export function totalHeight(tracks, textHeight, trackLabels) {
-    return sum(tracks.map(t => t.displays[0].height +
-        (['none', 'left'].includes(trackLabels) ? 0 : textHeight)));
-}
+import { totalHeight } from './util';
 // render LGV to SVG
 export async function renderToSvg(model, opts) {
-    var _a;
     await when(() => model.initialized);
     const { textHeight = 18, headerHeight = 40, rulerHeight = 50, fontSize = 13, cytobandHeight = 100, trackLabels = 'offset', themeName = 'default', Wrapper = ({ children }) => React.createElement(React.Fragment, null, children), } = opts;
     const session = getSession(model);
-    const theme = (_a = session.allThemes) === null || _a === void 0 ? void 0 : _a.call(session)[themeName];
+    const { allThemes } = session;
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    const { createRootFn } = getRoot(model);
+    const theme = allThemes === null || allThemes === void 0 ? void 0 : allThemes()[themeName];
     const { width, tracks, showCytobands } = model;
     const shift = 50;
     const c = +showCytobands * cytobandHeight;
@@ -41,7 +40,7 @@ export async function renderToSvg(model, opts) {
                 React.createElement("g", { transform: `translate(${shift} 0)` },
                     React.createElement("g", { transform: `translate(${trackLabelOffset})` },
                         React.createElement(SVGHeader, { model: model, fontSize: fontSize, rulerHeight: rulerHeight, cytobandHeight: cytobandHeight })),
-                    React.createElement(SVGTracks, { textHeight: textHeight, fontSize: fontSize, model: model, displayResults: displayResults, offset: offset, trackLabels: trackLabels, trackLabelOffset: trackLabelOffset }))))));
+                    React.createElement(SVGTracks, { textHeight: textHeight, fontSize: fontSize, model: model, displayResults: displayResults, offset: offset, trackLabels: trackLabels, trackLabelOffset: trackLabelOffset }))))), createRootFn);
 }
 export { default as SVGRuler } from './SVGRuler';
 export { default as SVGTracks } from './SVGTracks';

package/esm/LinearGenomeView/svgcomponents/util.d.ts

@@ -0,0 +1,8 @@
+interface Display {
+    height: number;
+}
+interface Track {
+    displays: Display[];
+}
+export declare function totalHeight(tracks: Track[], textHeight: number, trackLabels: string): number;
+export {};

package/esm/LinearGenomeView/svgcomponents/util.js

@@ -0,0 +1,5 @@
+import { sum } from '@jbrowse/core/util';
+export function totalHeight(tracks, textHeight, trackLabels) {
+    return sum(tracks.map(t => t.displays[0].height +
+        (['none', 'left'].includes(trackLabels) ? 0 : textHeight)));
+}

package/esm/index.d.ts

@@ -1080,11 +1080,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -1136,11 +1142,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -1387,11 +1399,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -1443,11 +1461,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -1704,11 +1728,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -1760,11 +1790,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -2011,11 +2047,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -2067,11 +2109,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -2328,11 +2376,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -2384,11 +2438,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -2635,11 +2695,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -2691,11 +2757,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         load(): Promise<void>;
                         loadPre(): Promise<void>;
                     } & {
-                        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getAdapterMapEntry(adapterConf: {
+                            [x: string]: unknown;
+                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                        getRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
-                        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        getReverseRefNameMapForAdapter(adapterConf: {
+                            [x: string]: unknown;
+                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
                             [x: string]: string | undefined;
                         }>;
                     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -2761,5 +2833,6 @@ export type { ExportSvgDisplayOptions, BaseLinearDisplayModel, BlockModel, } fro
 export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
 export { baseLinearDisplayConfigSchema, BaseLinearDisplay, BlockMsg, BaseLinearDisplayComponent, TrackHeightMixin, FeatureDensityMixin, TooLargeMessage, } from './BaseLinearDisplay';
 export { type LinearGenomeViewModel, type LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
-export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
+export { renderToSvg, SVGTracks, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
+export { totalHeight } from './LinearGenomeView/svgcomponents/util';
 export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';