@jbrowse/plugin-linear-genome-view 2.8.0 → 2.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. package/dist/BasicTrack/configSchema.d.ts +5 -0
  2. package/dist/FeatureTrack/configSchema.d.ts +5 -0
  3. package/dist/LaunchLinearGenomeView/index.js +16 -14
  4. package/dist/LinearGenomeView/components/CenterLine.js +1 -1
  5. package/dist/LinearGenomeView/components/ImportForm.js +26 -74
  6. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +12 -0
  7. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +29 -0
  8. package/dist/LinearGenomeView/components/OverviewScalebar.js +1 -1
  9. package/dist/LinearGenomeView/components/SearchBox.js +19 -56
  10. package/dist/LinearGenomeView/model.d.ts +12 -1
  11. package/dist/LinearGenomeView/model.js +16 -0
  12. package/dist/index.d.ts +702 -6
  13. package/dist/index.js +2 -2
  14. package/dist/searchUtils.d.ts +26 -0
  15. package/dist/searchUtils.js +90 -0
  16. package/esm/BasicTrack/configSchema.d.ts +5 -0
  17. package/esm/FeatureTrack/configSchema.d.ts +5 -0
  18. package/esm/LaunchLinearGenomeView/index.js +16 -14
  19. package/esm/LinearGenomeView/components/CenterLine.js +1 -1
  20. package/esm/LinearGenomeView/components/ImportForm.js +26 -74
  21. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +12 -0
  22. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +24 -0
  23. package/esm/LinearGenomeView/components/OverviewScalebar.js +1 -1
  24. package/esm/LinearGenomeView/components/SearchBox.js +20 -57
  25. package/esm/LinearGenomeView/model.d.ts +12 -1
  26. package/esm/LinearGenomeView/model.js +16 -0
  27. package/esm/index.d.ts +702 -6
  28. package/esm/index.js +2 -2
  29. package/esm/searchUtils.d.ts +26 -0
  30. package/esm/searchUtils.js +79 -0
  31. package/package.json +2 -2
package/dist/index.d.ts CHANGED
@@ -979,7 +979,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
979
979
  } & {
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  moveTrack(movingId: string, targetId: string): void;
981
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  closeView(): void;
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- toggleTrack(trackId: string): void;
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+ toggleTrack(trackId: string): boolean;
983
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  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
984
984
  toggleCenterLine(): void;
985
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -1029,6 +1029,122 @@ export default class LinearGenomeViewPlugin extends Plugin {
1029
1029
  } & {
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1030
  moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
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  navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
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+ navToSearchString({ input, assembly, }: {
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+ input: string;
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+ assembly: {
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+ configuration: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ error: unknown;
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+ loaded: boolean;
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+ loadingP: Promise<void> | undefined;
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+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1041
+ refNameAliases: {
1042
+ [x: string]: string | undefined;
1043
+ } | undefined;
1044
+ lowerCaseRefNameAliases: {
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+ [x: string]: string | undefined;
1046
+ } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1048
+ } & {
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+ getConf(arg: string): any;
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+ } & {
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+ readonly initialized: boolean;
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+ readonly name: string;
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+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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+ readonly aliases: string[];
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+ readonly displayName: string | undefined;
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+ hasName(name: string): boolean;
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+ readonly allAliases: string[];
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+ readonly allRefNames: string[] | undefined;
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+ readonly lowerCaseRefNames: string[] | undefined;
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+ readonly allRefNamesWithLowerCase: string[] | undefined;
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+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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+ readonly refNameColors: string[];
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+ } & {
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+ readonly refNames: string[] | undefined;
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+ } & {
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+ getCanonicalRefName(refName: string): string | undefined;
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+ getRefNameColor(refName: string): string | undefined;
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+ isValidRefName(refName: string): boolean;
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+ } & {
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+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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+ setError(e: unknown): void;
1072
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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+ setRefNameAliases(aliases: {
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+ [x: string]: string | undefined;
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+ }, lcAliases: {
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+ [x: string]: string | undefined;
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+ }): void;
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+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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+ setLoadingP(p?: Promise<void> | undefined): void;
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+ load(): Promise<void>;
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+ loadPre(): Promise<void>;
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+ } & {
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+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1084
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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+ [x: string]: string | undefined;
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+ }>;
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+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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+ [x: string]: string | undefined;
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+ }>;
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+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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+ }, {
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+ error: unknown;
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+ loaded: boolean;
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+ loadingP: Promise<void> | undefined;
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+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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+ refNameAliases: {
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+ [x: string]: string | undefined;
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+ } | undefined;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string | undefined;
1102
+ } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1104
+ } & {
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+ getConf(arg: string): any;
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+ } & {
1107
+ readonly initialized: boolean;
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+ readonly name: string;
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+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1110
+ readonly aliases: string[];
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+ readonly displayName: string | undefined;
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+ hasName(name: string): boolean;
1113
+ readonly allAliases: string[];
1114
+ readonly allRefNames: string[] | undefined;
1115
+ readonly lowerCaseRefNames: string[] | undefined;
1116
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1117
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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+ readonly refNameColors: string[];
1119
+ } & {
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+ readonly refNames: string[] | undefined;
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+ } & {
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+ getCanonicalRefName(refName: string): string | undefined;
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+ getRefNameColor(refName: string): string | undefined;
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+ isValidRefName(refName: string): boolean;
1125
+ } & {
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+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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+ setError(e: unknown): void;
1128
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1129
+ setRefNameAliases(aliases: {
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+ [x: string]: string | undefined;
1131
+ }, lcAliases: {
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+ [x: string]: string | undefined;
1133
+ }): void;
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+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1135
+ setLoadingP(p?: Promise<void> | undefined): void;
1136
+ load(): Promise<void>;
1137
+ loadPre(): Promise<void>;
1138
+ } & {
1139
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1140
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1141
+ [x: string]: string | undefined;
1142
+ }>;
1143
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1144
+ [x: string]: string | undefined;
1145
+ }>;
1146
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1147
+ }): Promise<void>;
1032
1148
  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
1033
1149
  navTo(query: import("./LinearGenomeView").NavLocation): void;
1034
1150
  navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
@@ -1170,7 +1286,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1170
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  } & {
1171
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  moveTrack(movingId: string, targetId: string): void;
1172
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  closeView(): void;
1173
- toggleTrack(trackId: string): void;
1289
+ toggleTrack(trackId: string): boolean;
1174
1290
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1175
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  toggleCenterLine(): void;
1176
1292
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -1220,6 +1336,122 @@ export default class LinearGenomeViewPlugin extends Plugin {
1220
1336
  } & {
1221
1337
  moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
1222
1338
  navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
1339
+ navToSearchString({ input, assembly, }: {
1340
+ input: string;
1341
+ assembly: {
1342
+ configuration: any;
1343
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1344
+ error: unknown;
1345
+ loaded: boolean;
1346
+ loadingP: Promise<void> | undefined;
1347
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1348
+ refNameAliases: {
1349
+ [x: string]: string | undefined;
1350
+ } | undefined;
1351
+ lowerCaseRefNameAliases: {
1352
+ [x: string]: string | undefined;
1353
+ } | undefined;
1354
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1355
+ } & {
1356
+ getConf(arg: string): any;
1357
+ } & {
1358
+ readonly initialized: boolean;
1359
+ readonly name: string;
1360
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1361
+ readonly aliases: string[];
1362
+ readonly displayName: string | undefined;
1363
+ hasName(name: string): boolean;
1364
+ readonly allAliases: string[];
1365
+ readonly allRefNames: string[] | undefined;
1366
+ readonly lowerCaseRefNames: string[] | undefined;
1367
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1368
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1369
+ readonly refNameColors: string[];
1370
+ } & {
1371
+ readonly refNames: string[] | undefined;
1372
+ } & {
1373
+ getCanonicalRefName(refName: string): string | undefined;
1374
+ getRefNameColor(refName: string): string | undefined;
1375
+ isValidRefName(refName: string): boolean;
1376
+ } & {
1377
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1378
+ setError(e: unknown): void;
1379
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1380
+ setRefNameAliases(aliases: {
1381
+ [x: string]: string | undefined;
1382
+ }, lcAliases: {
1383
+ [x: string]: string | undefined;
1384
+ }): void;
1385
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1386
+ setLoadingP(p?: Promise<void> | undefined): void;
1387
+ load(): Promise<void>;
1388
+ loadPre(): Promise<void>;
1389
+ } & {
1390
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1391
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1392
+ [x: string]: string | undefined;
1393
+ }>;
1394
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1395
+ [x: string]: string | undefined;
1396
+ }>;
1397
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1398
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1399
+ }, {
1400
+ error: unknown;
1401
+ loaded: boolean;
1402
+ loadingP: Promise<void> | undefined;
1403
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1404
+ refNameAliases: {
1405
+ [x: string]: string | undefined;
1406
+ } | undefined;
1407
+ lowerCaseRefNameAliases: {
1408
+ [x: string]: string | undefined;
1409
+ } | undefined;
1410
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1411
+ } & {
1412
+ getConf(arg: string): any;
1413
+ } & {
1414
+ readonly initialized: boolean;
1415
+ readonly name: string;
1416
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1417
+ readonly aliases: string[];
1418
+ readonly displayName: string | undefined;
1419
+ hasName(name: string): boolean;
1420
+ readonly allAliases: string[];
1421
+ readonly allRefNames: string[] | undefined;
1422
+ readonly lowerCaseRefNames: string[] | undefined;
1423
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1424
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1425
+ readonly refNameColors: string[];
1426
+ } & {
1427
+ readonly refNames: string[] | undefined;
1428
+ } & {
1429
+ getCanonicalRefName(refName: string): string | undefined;
1430
+ getRefNameColor(refName: string): string | undefined;
1431
+ isValidRefName(refName: string): boolean;
1432
+ } & {
1433
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1434
+ setError(e: unknown): void;
1435
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1436
+ setRefNameAliases(aliases: {
1437
+ [x: string]: string | undefined;
1438
+ }, lcAliases: {
1439
+ [x: string]: string | undefined;
1440
+ }): void;
1441
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1442
+ setLoadingP(p?: Promise<void> | undefined): void;
1443
+ load(): Promise<void>;
1444
+ loadPre(): Promise<void>;
1445
+ } & {
1446
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1447
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1448
+ [x: string]: string | undefined;
1449
+ }>;
1450
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1451
+ [x: string]: string | undefined;
1452
+ }>;
1453
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1454
+ }): Promise<void>;
1223
1455
  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
1224
1456
  navTo(query: import("./LinearGenomeView").NavLocation): void;
1225
1457
  navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
@@ -1371,7 +1603,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1371
1603
  } & {
1372
1604
  moveTrack(movingId: string, targetId: string): void;
1373
1605
  closeView(): void;
1374
- toggleTrack(trackId: string): void;
1606
+ toggleTrack(trackId: string): boolean;
1375
1607
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1376
1608
  toggleCenterLine(): void;
1377
1609
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -1421,6 +1653,122 @@ export default class LinearGenomeViewPlugin extends Plugin {
1421
1653
  } & {
1422
1654
  moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
1423
1655
  navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
1656
+ navToSearchString({ input, assembly, }: {
1657
+ input: string;
1658
+ assembly: {
1659
+ configuration: any;
1660
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1661
+ error: unknown;
1662
+ loaded: boolean;
1663
+ loadingP: Promise<void> | undefined;
1664
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1665
+ refNameAliases: {
1666
+ [x: string]: string | undefined;
1667
+ } | undefined;
1668
+ lowerCaseRefNameAliases: {
1669
+ [x: string]: string | undefined;
1670
+ } | undefined;
1671
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1672
+ } & {
1673
+ getConf(arg: string): any;
1674
+ } & {
1675
+ readonly initialized: boolean;
1676
+ readonly name: string;
1677
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1678
+ readonly aliases: string[];
1679
+ readonly displayName: string | undefined;
1680
+ hasName(name: string): boolean;
1681
+ readonly allAliases: string[];
1682
+ readonly allRefNames: string[] | undefined;
1683
+ readonly lowerCaseRefNames: string[] | undefined;
1684
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1685
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1686
+ readonly refNameColors: string[];
1687
+ } & {
1688
+ readonly refNames: string[] | undefined;
1689
+ } & {
1690
+ getCanonicalRefName(refName: string): string | undefined;
1691
+ getRefNameColor(refName: string): string | undefined;
1692
+ isValidRefName(refName: string): boolean;
1693
+ } & {
1694
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1695
+ setError(e: unknown): void;
1696
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1697
+ setRefNameAliases(aliases: {
1698
+ [x: string]: string | undefined;
1699
+ }, lcAliases: {
1700
+ [x: string]: string | undefined;
1701
+ }): void;
1702
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1703
+ setLoadingP(p?: Promise<void> | undefined): void;
1704
+ load(): Promise<void>;
1705
+ loadPre(): Promise<void>;
1706
+ } & {
1707
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1708
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1709
+ [x: string]: string | undefined;
1710
+ }>;
1711
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1712
+ [x: string]: string | undefined;
1713
+ }>;
1714
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1715
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1716
+ }, {
1717
+ error: unknown;
1718
+ loaded: boolean;
1719
+ loadingP: Promise<void> | undefined;
1720
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1721
+ refNameAliases: {
1722
+ [x: string]: string | undefined;
1723
+ } | undefined;
1724
+ lowerCaseRefNameAliases: {
1725
+ [x: string]: string | undefined;
1726
+ } | undefined;
1727
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1728
+ } & {
1729
+ getConf(arg: string): any;
1730
+ } & {
1731
+ readonly initialized: boolean;
1732
+ readonly name: string;
1733
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1734
+ readonly aliases: string[];
1735
+ readonly displayName: string | undefined;
1736
+ hasName(name: string): boolean;
1737
+ readonly allAliases: string[];
1738
+ readonly allRefNames: string[] | undefined;
1739
+ readonly lowerCaseRefNames: string[] | undefined;
1740
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1741
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1742
+ readonly refNameColors: string[];
1743
+ } & {
1744
+ readonly refNames: string[] | undefined;
1745
+ } & {
1746
+ getCanonicalRefName(refName: string): string | undefined;
1747
+ getRefNameColor(refName: string): string | undefined;
1748
+ isValidRefName(refName: string): boolean;
1749
+ } & {
1750
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1751
+ setError(e: unknown): void;
1752
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1753
+ setRefNameAliases(aliases: {
1754
+ [x: string]: string | undefined;
1755
+ }, lcAliases: {
1756
+ [x: string]: string | undefined;
1757
+ }): void;
1758
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1759
+ setLoadingP(p?: Promise<void> | undefined): void;
1760
+ load(): Promise<void>;
1761
+ loadPre(): Promise<void>;
1762
+ } & {
1763
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1764
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1765
+ [x: string]: string | undefined;
1766
+ }>;
1767
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1768
+ [x: string]: string | undefined;
1769
+ }>;
1770
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1771
+ }): Promise<void>;
1424
1772
  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
1425
1773
  navTo(query: import("./LinearGenomeView").NavLocation): void;
1426
1774
  navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
@@ -1562,7 +1910,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1562
1910
  } & {
1563
1911
  moveTrack(movingId: string, targetId: string): void;
1564
1912
  closeView(): void;
1565
- toggleTrack(trackId: string): void;
1913
+ toggleTrack(trackId: string): boolean;
1566
1914
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1567
1915
  toggleCenterLine(): void;
1568
1916
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -1612,6 +1960,122 @@ export default class LinearGenomeViewPlugin extends Plugin {
1612
1960
  } & {
1613
1961
  moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
1614
1962
  navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
1963
+ navToSearchString({ input, assembly, }: {
1964
+ input: string;
1965
+ assembly: {
1966
+ configuration: any;
1967
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1968
+ error: unknown;
1969
+ loaded: boolean;
1970
+ loadingP: Promise<void> | undefined;
1971
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1972
+ refNameAliases: {
1973
+ [x: string]: string | undefined;
1974
+ } | undefined;
1975
+ lowerCaseRefNameAliases: {
1976
+ [x: string]: string | undefined;
1977
+ } | undefined;
1978
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1979
+ } & {
1980
+ getConf(arg: string): any;
1981
+ } & {
1982
+ readonly initialized: boolean;
1983
+ readonly name: string;
1984
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1985
+ readonly aliases: string[];
1986
+ readonly displayName: string | undefined;
1987
+ hasName(name: string): boolean;
1988
+ readonly allAliases: string[];
1989
+ readonly allRefNames: string[] | undefined;
1990
+ readonly lowerCaseRefNames: string[] | undefined;
1991
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1992
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1993
+ readonly refNameColors: string[];
1994
+ } & {
1995
+ readonly refNames: string[] | undefined;
1996
+ } & {
1997
+ getCanonicalRefName(refName: string): string | undefined;
1998
+ getRefNameColor(refName: string): string | undefined;
1999
+ isValidRefName(refName: string): boolean;
2000
+ } & {
2001
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2002
+ setError(e: unknown): void;
2003
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2004
+ setRefNameAliases(aliases: {
2005
+ [x: string]: string | undefined;
2006
+ }, lcAliases: {
2007
+ [x: string]: string | undefined;
2008
+ }): void;
2009
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2010
+ setLoadingP(p?: Promise<void> | undefined): void;
2011
+ load(): Promise<void>;
2012
+ loadPre(): Promise<void>;
2013
+ } & {
2014
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2015
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2016
+ [x: string]: string | undefined;
2017
+ }>;
2018
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2019
+ [x: string]: string | undefined;
2020
+ }>;
2021
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
2022
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
2023
+ }, {
2024
+ error: unknown;
2025
+ loaded: boolean;
2026
+ loadingP: Promise<void> | undefined;
2027
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2028
+ refNameAliases: {
2029
+ [x: string]: string | undefined;
2030
+ } | undefined;
2031
+ lowerCaseRefNameAliases: {
2032
+ [x: string]: string | undefined;
2033
+ } | undefined;
2034
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2035
+ } & {
2036
+ getConf(arg: string): any;
2037
+ } & {
2038
+ readonly initialized: boolean;
2039
+ readonly name: string;
2040
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2041
+ readonly aliases: string[];
2042
+ readonly displayName: string | undefined;
2043
+ hasName(name: string): boolean;
2044
+ readonly allAliases: string[];
2045
+ readonly allRefNames: string[] | undefined;
2046
+ readonly lowerCaseRefNames: string[] | undefined;
2047
+ readonly allRefNamesWithLowerCase: string[] | undefined;
2048
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2049
+ readonly refNameColors: string[];
2050
+ } & {
2051
+ readonly refNames: string[] | undefined;
2052
+ } & {
2053
+ getCanonicalRefName(refName: string): string | undefined;
2054
+ getRefNameColor(refName: string): string | undefined;
2055
+ isValidRefName(refName: string): boolean;
2056
+ } & {
2057
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2058
+ setError(e: unknown): void;
2059
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2060
+ setRefNameAliases(aliases: {
2061
+ [x: string]: string | undefined;
2062
+ }, lcAliases: {
2063
+ [x: string]: string | undefined;
2064
+ }): void;
2065
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2066
+ setLoadingP(p?: Promise<void> | undefined): void;
2067
+ load(): Promise<void>;
2068
+ loadPre(): Promise<void>;
2069
+ } & {
2070
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2071
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2072
+ [x: string]: string | undefined;
2073
+ }>;
2074
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2075
+ [x: string]: string | undefined;
2076
+ }>;
2077
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
2078
+ }): Promise<void>;
1615
2079
  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
1616
2080
  navTo(query: import("./LinearGenomeView").NavLocation): void;
1617
2081
  navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
@@ -1763,7 +2227,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1763
2227
  } & {
1764
2228
  moveTrack(movingId: string, targetId: string): void;
1765
2229
  closeView(): void;
1766
- toggleTrack(trackId: string): void;
2230
+ toggleTrack(trackId: string): boolean;
1767
2231
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1768
2232
  toggleCenterLine(): void;
1769
2233
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -1813,6 +2277,122 @@ export default class LinearGenomeViewPlugin extends Plugin {
1813
2277
  } & {
1814
2278
  moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
1815
2279
  navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
2280
+ navToSearchString({ input, assembly, }: {
2281
+ input: string;
2282
+ assembly: {
2283
+ configuration: any;
2284
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
2285
+ error: unknown;
2286
+ loaded: boolean;
2287
+ loadingP: Promise<void> | undefined;
2288
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2289
+ refNameAliases: {
2290
+ [x: string]: string | undefined;
2291
+ } | undefined;
2292
+ lowerCaseRefNameAliases: {
2293
+ [x: string]: string | undefined;
2294
+ } | undefined;
2295
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2296
+ } & {
2297
+ getConf(arg: string): any;
2298
+ } & {
2299
+ readonly initialized: boolean;
2300
+ readonly name: string;
2301
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2302
+ readonly aliases: string[];
2303
+ readonly displayName: string | undefined;
2304
+ hasName(name: string): boolean;
2305
+ readonly allAliases: string[];
2306
+ readonly allRefNames: string[] | undefined;
2307
+ readonly lowerCaseRefNames: string[] | undefined;
2308
+ readonly allRefNamesWithLowerCase: string[] | undefined;
2309
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2310
+ readonly refNameColors: string[];
2311
+ } & {
2312
+ readonly refNames: string[] | undefined;
2313
+ } & {
2314
+ getCanonicalRefName(refName: string): string | undefined;
2315
+ getRefNameColor(refName: string): string | undefined;
2316
+ isValidRefName(refName: string): boolean;
2317
+ } & {
2318
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2319
+ setError(e: unknown): void;
2320
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2321
+ setRefNameAliases(aliases: {
2322
+ [x: string]: string | undefined;
2323
+ }, lcAliases: {
2324
+ [x: string]: string | undefined;
2325
+ }): void;
2326
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2327
+ setLoadingP(p?: Promise<void> | undefined): void;
2328
+ load(): Promise<void>;
2329
+ loadPre(): Promise<void>;
2330
+ } & {
2331
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2332
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2333
+ [x: string]: string | undefined;
2334
+ }>;
2335
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2336
+ [x: string]: string | undefined;
2337
+ }>;
2338
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
2339
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
2340
+ }, {
2341
+ error: unknown;
2342
+ loaded: boolean;
2343
+ loadingP: Promise<void> | undefined;
2344
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2345
+ refNameAliases: {
2346
+ [x: string]: string | undefined;
2347
+ } | undefined;
2348
+ lowerCaseRefNameAliases: {
2349
+ [x: string]: string | undefined;
2350
+ } | undefined;
2351
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2352
+ } & {
2353
+ getConf(arg: string): any;
2354
+ } & {
2355
+ readonly initialized: boolean;
2356
+ readonly name: string;
2357
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2358
+ readonly aliases: string[];
2359
+ readonly displayName: string | undefined;
2360
+ hasName(name: string): boolean;
2361
+ readonly allAliases: string[];
2362
+ readonly allRefNames: string[] | undefined;
2363
+ readonly lowerCaseRefNames: string[] | undefined;
2364
+ readonly allRefNamesWithLowerCase: string[] | undefined;
2365
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2366
+ readonly refNameColors: string[];
2367
+ } & {
2368
+ readonly refNames: string[] | undefined;
2369
+ } & {
2370
+ getCanonicalRefName(refName: string): string | undefined;
2371
+ getRefNameColor(refName: string): string | undefined;
2372
+ isValidRefName(refName: string): boolean;
2373
+ } & {
2374
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2375
+ setError(e: unknown): void;
2376
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2377
+ setRefNameAliases(aliases: {
2378
+ [x: string]: string | undefined;
2379
+ }, lcAliases: {
2380
+ [x: string]: string | undefined;
2381
+ }): void;
2382
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2383
+ setLoadingP(p?: Promise<void> | undefined): void;
2384
+ load(): Promise<void>;
2385
+ loadPre(): Promise<void>;
2386
+ } & {
2387
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2388
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2389
+ [x: string]: string | undefined;
2390
+ }>;
2391
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2392
+ [x: string]: string | undefined;
2393
+ }>;
2394
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
2395
+ }): Promise<void>;
1816
2396
  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
1817
2397
  navTo(query: import("./LinearGenomeView").NavLocation): void;
1818
2398
  navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
@@ -1954,7 +2534,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1954
2534
  } & {
1955
2535
  moveTrack(movingId: string, targetId: string): void;
1956
2536
  closeView(): void;
1957
- toggleTrack(trackId: string): void;
2537
+ toggleTrack(trackId: string): boolean;
1958
2538
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1959
2539
  toggleCenterLine(): void;
1960
2540
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -2004,6 +2584,122 @@ export default class LinearGenomeViewPlugin extends Plugin {
2004
2584
  } & {
2005
2585
  moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
2006
2586
  navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
2587
+ navToSearchString({ input, assembly, }: {
2588
+ input: string;
2589
+ assembly: {
2590
+ configuration: any;
2591
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
2592
+ error: unknown;
2593
+ loaded: boolean;
2594
+ loadingP: Promise<void> | undefined;
2595
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2596
+ refNameAliases: {
2597
+ [x: string]: string | undefined;
2598
+ } | undefined;
2599
+ lowerCaseRefNameAliases: {
2600
+ [x: string]: string | undefined;
2601
+ } | undefined;
2602
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2603
+ } & {
2604
+ getConf(arg: string): any;
2605
+ } & {
2606
+ readonly initialized: boolean;
2607
+ readonly name: string;
2608
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2609
+ readonly aliases: string[];
2610
+ readonly displayName: string | undefined;
2611
+ hasName(name: string): boolean;
2612
+ readonly allAliases: string[];
2613
+ readonly allRefNames: string[] | undefined;
2614
+ readonly lowerCaseRefNames: string[] | undefined;
2615
+ readonly allRefNamesWithLowerCase: string[] | undefined;
2616
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2617
+ readonly refNameColors: string[];
2618
+ } & {
2619
+ readonly refNames: string[] | undefined;
2620
+ } & {
2621
+ getCanonicalRefName(refName: string): string | undefined;
2622
+ getRefNameColor(refName: string): string | undefined;
2623
+ isValidRefName(refName: string): boolean;
2624
+ } & {
2625
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2626
+ setError(e: unknown): void;
2627
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2628
+ setRefNameAliases(aliases: {
2629
+ [x: string]: string | undefined;
2630
+ }, lcAliases: {
2631
+ [x: string]: string | undefined;
2632
+ }): void;
2633
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2634
+ setLoadingP(p?: Promise<void> | undefined): void;
2635
+ load(): Promise<void>;
2636
+ loadPre(): Promise<void>;
2637
+ } & {
2638
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2639
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2640
+ [x: string]: string | undefined;
2641
+ }>;
2642
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2643
+ [x: string]: string | undefined;
2644
+ }>;
2645
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
2646
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
2647
+ }, {
2648
+ error: unknown;
2649
+ loaded: boolean;
2650
+ loadingP: Promise<void> | undefined;
2651
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2652
+ refNameAliases: {
2653
+ [x: string]: string | undefined;
2654
+ } | undefined;
2655
+ lowerCaseRefNameAliases: {
2656
+ [x: string]: string | undefined;
2657
+ } | undefined;
2658
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2659
+ } & {
2660
+ getConf(arg: string): any;
2661
+ } & {
2662
+ readonly initialized: boolean;
2663
+ readonly name: string;
2664
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2665
+ readonly aliases: string[];
2666
+ readonly displayName: string | undefined;
2667
+ hasName(name: string): boolean;
2668
+ readonly allAliases: string[];
2669
+ readonly allRefNames: string[] | undefined;
2670
+ readonly lowerCaseRefNames: string[] | undefined;
2671
+ readonly allRefNamesWithLowerCase: string[] | undefined;
2672
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2673
+ readonly refNameColors: string[];
2674
+ } & {
2675
+ readonly refNames: string[] | undefined;
2676
+ } & {
2677
+ getCanonicalRefName(refName: string): string | undefined;
2678
+ getRefNameColor(refName: string): string | undefined;
2679
+ isValidRefName(refName: string): boolean;
2680
+ } & {
2681
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2682
+ setError(e: unknown): void;
2683
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2684
+ setRefNameAliases(aliases: {
2685
+ [x: string]: string | undefined;
2686
+ }, lcAliases: {
2687
+ [x: string]: string | undefined;
2688
+ }): void;
2689
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2690
+ setLoadingP(p?: Promise<void> | undefined): void;
2691
+ load(): Promise<void>;
2692
+ loadPre(): Promise<void>;
2693
+ } & {
2694
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2695
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2696
+ [x: string]: string | undefined;
2697
+ }>;
2698
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2699
+ [x: string]: string | undefined;
2700
+ }>;
2701
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
2702
+ }): Promise<void>;
2007
2703
  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
2008
2704
  navTo(query: import("./LinearGenomeView").NavLocation): void;
2009
2705
  navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;