@jbrowse/plugin-linear-genome-view 2.4.2 → 2.5.0

package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const useStyles: (params: void, styleOverrides?: {
     props: any;

package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts

@@ -1,10 +1,9 @@
-/// <reference types="react" />
-import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
 declare function TooLargeMessage({ model, }: {
     model: {
         regionTooLargeReason: string;
-        estimatedRegionsStats?: Stats;
-        updateStatsLimit: (s?: Stats) => void;
+        featureDensityStats?: FeatureDensityStats;
+        setFeatureDensityStatsLimit: (s?: FeatureDensityStats) => void;
         reload: () => void;
     };
 }): JSX.Element;

package/dist/BaseLinearDisplay/components/TooLargeMessage.js

@@ -9,10 +9,14 @@ const BlockMsg_1 = __importDefault(require("../components/BlockMsg"));
 function TooLargeMessage({ model, }) {
     const { regionTooLargeReason } = model;
     return (react_1.default.createElement(BlockMsg_1.default, { severity: "warning", action: () => {
-            model.updateStatsLimit(model.estimatedRegionsStats);
+            model.setFeatureDensityStatsLimit(model.featureDensityStats);
             model.reload();
-        }, buttonText: "Force load", message: `${regionTooLargeReason ? `${regionTooLargeReason}. ` : ''}
-      Zoom in to see features or force load (may be slow).` }));
+        }, buttonText: "Force load", message: [
+            regionTooLargeReason,
+            'Zoom in to see features or force load (may be slow)',
+        ]
+            .filter(f => !!f)
+            .join('. ') }));
 }
 exports.default = TooLargeMessage;
 //# sourceMappingURL=TooLargeMessage.js.map

package/dist/BaseLinearDisplay/components/TooLargeMessage.js.map

@@ -1 +1 @@
-{"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/TooLargeMessage.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AAGzB,SAAS;AACT,sEAA6C;AAE7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,8BAAC,kBAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAA;YACnD,KAAK,CAAC,MAAM,EAAE,CAAA;QAChB,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE,GAAG,oBAAoB,CAAC,CAAC,CAAC,GAAG,oBAAoB,IAAI,CAAC,CAAC,CAAC,EAAE;2DACd,GACrD,CACH,CAAA;AACH,CAAC;AAED,kBAAe,eAAe,CAAA"}
+{"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/TooLargeMessage.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AAGzB,SAAS;AACT,sEAA6C;AAE7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,8BAAC,kBAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,KAAK,CAAC,2BAA2B,CAAC,KAAK,CAAC,mBAAmB,CAAC,CAAA;YAC5D,KAAK,CAAC,MAAM,EAAE,CAAA;QAChB,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE;YACP,oBAAoB;YACpB,qDAAqD;SACtD;aACE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;aAChB,IAAI,CAAC,IAAI,CAAC,GACb,CACH,CAAA;AACH,CAAC;AAED,kBAAe,eAAe,CAAA"}

package/dist/BaseLinearDisplay/components/Tooltip.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 type Coord = [number, number];
 declare const Tooltip: ({ model, clientMouseCoord, }: {

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts

@@ -2,7 +2,7 @@ import React from 'react';
 import { ThemeOptions } from '@mui/material';
 import { MenuItem } from '@jbrowse/core/ui';
 import { Feature } from '@jbrowse/core/util';
-import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { BaseBlock } from '@jbrowse/core/util/blockTypes';
 import { Region } from '@jbrowse/core/util/types';
 import CompositeMap from '@jbrowse/core/util/compositeMap';
@@ -67,7 +67,9 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         setRendered(props: {
             reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
             features: Map<string, Feature>;
-            layout: any;
+            layout: any; /**
+             * #getter
+             */
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
@@ -83,6 +85,32 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      * #property
      */
     userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    /**
+     * #property
+     */
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        maxFeatureScreenDensity: {
+            type: string;
+            description: string;
+            defaultValue: number;
+        };
+        fetchSizeLimit: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        height: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        mouseover: {
+            type: string;
+            description: string;
+            defaultValue: string;
+            contextVariable: string[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 }, {
     rendererTypeName: string;
     error: unknown;
@@ -112,7 +140,10 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
             type: string;
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
+            rendererTypeName: string; /**
+             * #property
+             * updated via autorun
+             */
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -141,8 +172,8 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: Feature | undefined;
-    estimatedRegionsStatsP: Promise<Stats> | undefined;
-    estimatedRegionsStats: Stats | undefined;
+    featureDensityStatsP: Promise<FeatureDensityStats> | undefined;
+    featureDensityStats: FeatureDensityStats | undefined;
 } & {
     readonly height: number;
     /**
@@ -214,7 +245,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #getter
      */
-    readonly estimatedStatsReady: boolean;
+    readonly featureDensityStatsReady: boolean;
     /**
      * #getter
      */
@@ -229,19 +260,19 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #action
      */
-    estimateRegionsStats(): Promise<Stats>;
+    getFeatureDensityStats(): Promise<FeatureDensityStats>;
     /**
      * #action
      */
-    setRegionsStatsP(arg: any): void;
+    setFeatureDensityStatsP(arg: any): void;
     /**
      * #action
      */
-    setRegionsStats(estimatedRegionsStats?: Stats): void;
+    setFeatureDensityStats(featureDensityStats?: FeatureDensityStats): void;
     /**
      * #action
      */
-    clearRegionsStats(): void;
+    clearFeatureDensityStats(): void;
     /**
      * #action
      */
@@ -257,7 +288,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #action
      */
-    updateStatsLimit(stats?: Stats): void;
+    setFeatureDensityStatsLimit(stats?: FeatureDensityStats): void;
     /**
      * #action
      */
@@ -281,7 +312,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #action
      */
-    setFeatureIdUnderMouse(feature: string | undefined): void;
+    setFeatureIdUnderMouse(feature?: string): void;
     /**
      * #action
      */
@@ -296,7 +327,8 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      * region is too large if:
      * - stats are ready
      * - region is greater than 20kb (don't warn when zoomed in less than that)
-     * - and bytes is greater than max allowed bytes or density greater than max density
+     * - and bytes is greater than max allowed bytes or density greater than max
+     *   density
      */
     readonly regionTooLarge: boolean;
     /**
@@ -397,7 +429,9 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         setRendered(props: {
             reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
             features: Map<string, Feature>;
-            layout: any;
+            layout: any; /**
+             * #getter
+             */
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
@@ -413,9 +447,36 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      * #property
      */
     userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    /**
+     * #property
+     */
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        maxFeatureScreenDensity: {
+            type: string;
+            description: string;
+            defaultValue: number;
+        };
+        fetchSizeLimit: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        height: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+        mouseover: {
+            type: string;
+            description: string;
+            defaultValue: string;
+            contextVariable: string[];
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 }>>, {
     type: string;
     id: string;
+    configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
     rpcDriverName: string | undefined;
     heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js

@@ -42,6 +42,7 @@ const BaseLinearDisplay_1 = require("../components/BaseLinearDisplay");
 const TooLargeMessage_1 = __importDefault(require("../components/TooLargeMessage"));
 const serverSideRenderedBlock_1 = __importStar(require("./serverSideRenderedBlock"));
 const util_2 = require("./util");
+const configSchema_1 = __importDefault(require("./configSchema"));
 const minDisplayHeight = 20;
 /**
  * #stateModel BaseLinearDisplay
@@ -67,6 +68,10 @@ function stateModelFactory() {
          * #property
          */
         userByteSizeLimit: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
+        /**
+         * #property
+         */
+        configuration: (0, configuration_1.ConfigurationReference)(configSchema_1.default),
     }))
         .volatile(() => ({
         currBpPerPx: 0,
@@ -74,8 +79,8 @@ function stateModelFactory() {
         message: '',
         featureIdUnderMouse: undefined,
         contextMenuFeature: undefined,
-        estimatedRegionsStatsP: undefined,
-        estimatedRegionsStats: undefined,
+        featureDensityStatsP: undefined,
+        featureDensityStats: undefined,
     }))
         .views(self => ({
         get height() {
@@ -194,7 +199,7 @@ function stateModelFactory() {
          */
         get currentBytesRequested() {
             var _a;
-            return ((_a = self.estimatedRegionsStats) === null || _a === void 0 ? void 0 : _a.bytes) || 0;
+            return ((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.bytes) || 0;
         },
         /**
          * #getter
@@ -202,7 +207,7 @@ function stateModelFactory() {
         get currentFeatureScreenDensity() {
             var _a;
             const view = (0, util_1.getContainingView)(self);
-            return (((_a = self.estimatedRegionsStats) === null || _a === void 0 ? void 0 : _a.featureDensity) || 0) * view.bpPerPx;
+            return (((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.featureDensity) || 0) * view.bpPerPx;
         },
         /**
          * #getter
@@ -213,8 +218,8 @@ function stateModelFactory() {
         /**
          * #getter
          */
-        get estimatedStatsReady() {
-            return !!self.estimatedRegionsStats || !!self.userBpPerPxLimit;
+        get featureDensityStatsReady() {
+            return !!self.featureDensityStats || !!self.userBpPerPxLimit;
         },
         /**
          * #getter
@@ -222,7 +227,7 @@ function stateModelFactory() {
         get maxAllowableBytes() {
             var _a;
             return (self.userByteSizeLimit ||
-                ((_a = self.estimatedRegionsStats) === null || _a === void 0 ? void 0 : _a.fetchSizeLimit) ||
+                ((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.fetchSizeLimit) ||
                 (0, configuration_1.getConf)(self, 'fetchSizeLimit'));
         },
     }))
@@ -260,33 +265,33 @@ function stateModelFactory() {
         /**
          * #action
          */
-        async estimateRegionsStats() {
-            if (!self.estimatedRegionsStatsP) {
-                self.estimatedRegionsStatsP = (0, util_2.estimateRegionsStatsPre)(self).catch(e => {
-                    this.setRegionsStatsP(undefined);
+        async getFeatureDensityStats() {
+            if (!self.featureDensityStatsP) {
+                self.featureDensityStatsP = (0, util_2.getFeatureDensityStatsPre)(self).catch(e => {
+                    this.setFeatureDensityStatsP(undefined);
                     throw e;
                 });
             }
-            return self.estimatedRegionsStatsP;
+            return self.featureDensityStatsP;
         },
         /**
          * #action
          */
-        setRegionsStatsP(arg) {
-            self.estimatedRegionsStatsP = arg;
+        setFeatureDensityStatsP(arg) {
+            self.featureDensityStatsP = arg;
         },
         /**
          * #action
          */
-        setRegionsStats(estimatedRegionsStats) {
-            self.estimatedRegionsStats = estimatedRegionsStats;
+        setFeatureDensityStats(featureDensityStats) {
+            self.featureDensityStats = featureDensityStats;
         },
         /**
          * #action
          */
-        clearRegionsStats() {
-            self.estimatedRegionsStatsP = undefined;
-            self.estimatedRegionsStats = undefined;
+        clearFeatureDensityStats() {
+            self.featureDensityStatsP = undefined;
+            self.featureDensityStats = undefined;
         },
         /**
          * #action
@@ -313,7 +318,7 @@ function stateModelFactory() {
         /**
          * #action
          */
-        updateStatsLimit(stats) {
+        setFeatureDensityStatsLimit(stats) {
             const view = (0, util_1.getContainingView)(self);
             if (stats === null || stats === void 0 ? void 0 : stats.bytes) {
                 self.userByteSizeLimit = stats.bytes;
@@ -364,8 +369,7 @@ function stateModelFactory() {
          * #action
          */
         clearFeatureSelection() {
-            const session = (0, util_1.getSession)(self);
-            session.clearSelection();
+            (0, util_1.getSession)(self).clearSelection();
         },
         /**
          * #action
@@ -393,11 +397,13 @@ function stateModelFactory() {
          * region is too large if:
          * - stats are ready
          * - region is greater than 20kb (don't warn when zoomed in less than that)
-         * - and bytes is greater than max allowed bytes or density greater than max density
+         * - and bytes is greater than max allowed bytes or density greater than max
+         *   density
          */
         get regionTooLarge() {
             const view = (0, util_1.getContainingView)(self);
-            if (!self.estimatedStatsReady || view.dynamicBlocks.totalBp < 20000) {
+            if (!self.featureDensityStatsReady ||
+                view.dynamicBlocks.totalBp < 20000) {
                 return false;
             }
             return (self.currentBytesRequested > self.maxAllowableBytes ||
@@ -433,9 +439,9 @@ function stateModelFactory() {
                     return;
                 }
                 try {
-                    const estimatedRegionsStats = await self.estimateRegionsStats();
+                    const featureDensityStats = await self.getFeatureDensityStats();
                     if ((0, mobx_state_tree_1.isAlive)(self)) {
-                        self.setRegionsStats(estimatedRegionsStats);
+                        self.setFeatureDensityStats(featureDensityStats);
                         superReload();
                     }
                 }
@@ -450,7 +456,7 @@ function stateModelFactory() {
         afterAttach() {
             // this autorun performs stats estimation
             //
-            // the chain of events calls estimateRegionsStats against the data
+            // the chain of events calls getFeatureDensityStats against the data
             // adapter which by default uses featureDensity, but can also respond
             // with a byte size estimate and fetch size limit (data adapter can
             // define what is too much data)
@@ -466,7 +472,7 @@ function stateModelFactory() {
                     }
                     // don't re-estimate featureDensity even if zoom level changes,
                     // jbrowse1-style assume it's sort of representative
-                    if (((_a = self.estimatedRegionsStats) === null || _a === void 0 ? void 0 : _a.featureDensity) !== undefined) {
+                    if (((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.featureDensity) !== undefined) {
                         self.setCurrBpPerPx(view.bpPerPx);
                         return;
                     }
@@ -474,11 +480,11 @@ function stateModelFactory() {
                     if (view.bpPerPx === self.currBpPerPx) {
                         return;
                     }
-                    self.clearRegionsStats();
+                    self.clearFeatureDensityStats();
                     self.setCurrBpPerPx(view.bpPerPx);
-                    const estimatedRegionsStats = await self.estimateRegionsStats();
+                    const featureDensityStats = await self.getFeatureDensityStats();
                     if ((0, mobx_state_tree_1.isAlive)(self)) {
-                        self.setRegionsStats(estimatedRegionsStats);
+                        self.setFeatureDensityStats(featureDensityStats);
                     }
                 }
                 catch (e) {
@@ -541,7 +547,7 @@ function stateModelFactory() {
             const view = (0, util_1.getContainingView)(self);
             return {
                 ...(0, tracks_1.getParentRenderProps)(self),
-                notReady: self.currBpPerPx !== view.bpPerPx || !self.estimatedRegionsStats,
+                notReady: self.currBpPerPx !== view.bpPerPx || !self.featureDensityStatsReady,
                 rpcDriverName: self.rpcDriverName,
                 displayModel: self,
                 onFeatureClick(_, featureId) {

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map

@@ -1 +1 @@
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package/dist/BaseLinearDisplay/models/configSchema.d.ts

@@ -1,2 +1,36 @@
-declare const baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    maxFeatureScreenDensity: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    /**
+     * #slot
+     */
+    fetchSizeLimit: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    height: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    mouseover: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 export default baseLinearDisplayConfigSchema;

package/dist/BaseLinearDisplay/models/configSchema.js

@@ -33,6 +33,15 @@ const baseLinearDisplayConfigSchema = (0, configuration_1.ConfigurationSchema)('
         defaultValue: 100,
         description: 'default height for the track',
     },
+    /**
+     * #slot
+     */
+    mouseover: {
+        type: 'string',
+        description: 'text to display when the cursor hovers over a feature',
+        defaultValue: `jexl:get(feature,'name')`,
+        contextVariable: ['feature'],
+    },
 }, {
     /**
      * #identifier

package/dist/BaseLinearDisplay/models/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;;;;GAKG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,6BAA6B,GAAG,IAAA,mCAAmB,EACvD,mBAAmB,EACnB;IACE;;OAEG;IACH,uBAAuB,EAAE;QACvB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,qGAAqG;QACvG,YAAY,EAAE,GAAG;KAClB;IACD;;OAEG;IACH,cAAc,EAAE;QACd,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,OAAS;QACvB,WAAW,EACT,4FAA4F;KAC/F;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,GAAG;QACjB,WAAW,EAAE,8BAA8B;KAC5C;CACF,EACD;IACE;;OAEG;IACH,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AAED,kBAAe,6BAA6B,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;;;;GAKG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,6BAA6B,GAAG,IAAA,mCAAmB,EACvD,mBAAmB,EACnB;IACE;;OAEG;IACH,uBAAuB,EAAE;QACvB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,qGAAqG;QACvG,YAAY,EAAE,GAAG;KAClB;IACD;;OAEG;IACH,cAAc,EAAE;QACd,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,OAAS;QACvB,WAAW,EACT,4FAA4F;KAC/F;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,GAAG;QACjB,WAAW,EAAE,8BAA8B;KAC5C;IACD;;OAEG;IACH,SAAS,EAAE;QACT,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,uDAAuD;QACpE,YAAY,EAAE,0BAA0B;QAExC,eAAe,EAAE,CAAC,SAAS,CAAC;KAC7B;CACF,EACD;IACE;;OAEG;IACH,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AAED,kBAAe,6BAA6B,CAAA"}

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js

@@ -43,12 +43,16 @@ const blockState = mobx_state_tree_1.types
         },
         afterAttach() {
             const display = (0, util_1.getContainingDisplay)(self);
-            (0, util_1.makeAbortableReaction)(self, renderBlockData, renderBlockEffect, // reaction doesn't expect async here
-            {
-                name: `${display.id}/${(0, util_1.assembleLocString)(self.region)} rendering`,
-                delay: display.renderDelay,
-                fireImmediately: true,
-            }, this.setLoading, this.setRendered, this.setError);
+            setTimeout(() => {
+                if ((0, mobx_state_tree_1.isAlive)(self)) {
+                    (0, util_1.makeAbortableReaction)(self, renderBlockData, renderBlockEffect, // reaction doesn't expect async here
+                    {
+                        name: `${display.id}/${(0, util_1.assembleLocString)(self.region)} rendering`,
+                        delay: display.renderDelay,
+                        fireImmediately: true,
+                    }, this.setLoading, this.setRendered, this.setError);
+                }
+            }, display.renderDelay);
         },
         setStatus(message) {
             self.status = message;

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"serverSideRenderedBlock.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/serverSideRenderedBlock.ts"],"names":[],"mappings":";;;;;;AAEA,qDAOwB;AACxB,+DAA4D;AAC5D,6CAQ2B;AAC3B,sDAAqD;AACrD,oDAGiC;AAEjC,sDAGkC;AAElC,SAAS;AACT,kHAAyF;AAEzF,oEAAoE;AACpE,MAAM,UAAU,GAAG,uBAAK;KACrB,KAAK,CAAC,YAAY,EAAE;IACnB,GAAG,EAAE,uBAAK,CAAC,MAAM;IACjB,MAAM,EAAE,YAAM;IACd,UAAU,EAAE,CAAC;IACb,0BAA0B,EAAE,KAAK;IACjC,2BAA2B,EAAE,KAAK;CACnC,CAAC;IACF,yFAAyF;KACxF,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;IACf,gBAAgB,EAAE,SAAwC;IAC1D,MAAM,EAAE,KAAK;IACb,YAAY,EAAE,SAA2C;IACzD,QAAQ,EAAE,SAA6C;IACvD,MAAM,EAAE,SAAgB;IACxB,MAAM,EAAE,EAAE;IACV,KAAK,EAAE,SAAoB;IAC3B,OAAO,EAAE,SAA+B;IACxC,gBAAgB,EAAE,KAAK;IACvB,cAAc,EAAE,wCAA8B;IAC9C,WAAW,EAAE,SAAgB;CAC9B,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE;IACd,IAAI,gBAA6C,CAAA;IACjD,OAAO;QACL,QAAQ;YACN,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA;QACvC,CAAC;QACD,WAAW;YACT,MAAM,OAAO,GAAG,IAAA,2BAAoB,EAAC,IAAI,CAAC,CAAA;YAC1C,UAAU,CAAC,GAAG,EAAE;gBACd,IAAI,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;oBACjB,IAAA,4BAAqB,EACnB,IAAW,EACX,eAAe,EACf,iBAAiB,EAAE,qCAAqC;oBACxD;wBACE,IAAI,EAAE,GAAG,OAAO,CAAC,EAAE,IAAI,IAAA,wBAAiB,EACtC,IAAI,CAAC,MAAM,CACZ,YAAY;wBACb,KAAK,EAAE,OAAO,CAAC,WAAW;wBAC1B,eAAe,EAAE,IAAI;qBACtB,EACD,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,EAChB,IAAI,CAAC,QAAQ,CACd,CAAA;iBACF;YACH,CAAC,EAAE,OAAO,CAAC,WAAW,CAAC,CAAA;QACzB,CAAC;QACD,SAAS,CAAC,OAAe;YACvB,IAAI,CAAC,MAAM,GAAG,OAAO,CAAA;QACvB,CAAC;QACD,UAAU,CAAC,eAAgC;YACzC,IACE,gBAAgB,KAAK,SAAS;gBAC9B,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAChC;gBACA,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,eAAe,CAAA;QACpC,CAAC;QACD,UAAU,CAAC,WAAmB;YAC5B,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,WAAW,CAAA;YAC1B,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,WAAW,CACT,KAQa;YAEb,IAAI,CAAC,KAAK,EAAE;gBACV,OAAM;aACP;YACD,MAAM,EACJ,YAAY,EACZ,QAAQ,EACR,MAAM,EACN,gBAAgB,EAChB,WAAW,GACZ,GAAG,KAAK,CAAA;YACT,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;YAChC,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;YACxB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;YACpB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,gBAAgB,CAAA;YACxC,IAAI,CAAC,WAAW,GAAG,WAAW,CAAA;YAC9B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,QAAQ,CAAC,KAAc;YACrB,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACpB,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,uCAAuC;YACvC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;YAClB,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;YAC5B,IAAI,IAAA,wBAAgB,EAAC,KAAc,CAAC,EAAE;gBACpC,IAAI,CAAC,MAAM,EAAE,CAAA;aACd;QACH,CAAC;QACD,MAAM;YACJ,IAAI,CAAC,gBAAgB,GAAG,SAAS,CAAA;YACjC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,cAAc,GAAG,wCAA8B,CAAA;YACpD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,IAAA,2BAAS,EAAM,IAAI,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,CAAA;QAClC,CAAC;QACD,aAAa;YACX,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,MAAM,OAAO,GAAG,IAAA,2BAAoB,EAAC,IAAI,CAAC,CAAA;YAC1C,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YACvC,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;YAChC,MAAM,EAAE,UAAU,EAAE,GAAG,eAAe,CAAC,IAAA,sBAAI,EAAC,IAAI,CAAC,CAAC,CAAA;YAClD,iEAAiE;YACjE,IAAI,UAAU,EAAE;gBACd,YAAY;qBACT,qBAAqB,CACpB,UAAU,EACV,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CACvC;qBACA,KAAK,CAAC,CAAC,CAAQ,EAAE,EAAE;oBAClB,kEAAkE;oBAClE,OAAO,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC,CAAA;gBACjD,CAAC,CAAC,CAAA;aACL;QACH,CAAC;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEJ,kBAAe,UAAU,CAAA;AAIzB,2EAA2E;AAC3E,mDAAmD;AACnD,SAAgB,eAAe,CAC7B,IAAgB,EAChB,UAAiC;IAEjC,IAAI;QACF,MAAM,OAAO,GAAG,UAAU,IAAK,IAAA,2BAAoB,EAAC,IAAI,CAAS,CAAA;QACjE,MAAM,EAAE,eAAe,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,OAAO,CAAC,CAAA;QAC3D,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACnE,MAAM,aAAa,GAAG,IAAA,8BAAqB,EAAC,WAAW,CAAC,CAAA;QACxD,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;QAC1C,IACE,CAAC,aAAa,CAAC,QAAQ,CAAC,SAAS,CAAC;YAClC,CAAC,aAAa,CAAC,IAAI,CAAC,IA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package/dist/BaseLinearDisplay/models/util.d.ts

@@ -1,4 +1,5 @@
-import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { IAnyStateTreeNode } from 'mobx-state-tree';
 export interface RenderProps {
     rendererType: any;
@@ -19,4 +20,7 @@ export interface ErrorProps {
 }
 export declare function getDisplayStr(totalBytes: number): string;
 export declare function getId(id: string, index: number): string;
-export declare function estimateRegionsStatsPre(self: IAnyStateTreeNode): Promise<Stats>;
+export declare function getFeatureDensityStatsPre(self: IAnyStateTreeNode & {
+    adapterConfig?: AnyConfigurationModel;
+    setMessage: (arg: string) => void;
+}): Promise<FeatureDensityStats>;