@jbrowse/plugin-linear-genome-view 2.4.1 → 2.4.2

package/dist/index.d.ts

@@ -161,8 +161,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
                 readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -175,7 +175,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
                 readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
                 readonly currentBytesRequested: number;
@@ -185,19 +185,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
+            } & {
                 afterAttach(): void;
-                estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                    headers?: Record<string, string> | undefined;
-                    signal?: AbortSignal | undefined;
-                    filters?: string[] | undefined;
-                }): Promise<{}>;
-                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionStats(): void;
+                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+                setRegionsStatsP(arg: any): void;
+                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                clearRegionsStats(): void;
                 setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
@@ -211,18 +208,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
+            } & {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
                 regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): {
-                    label: string;
-                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                        muiName: string;
-                    };
-                    onClick: () => void;
-                }[];
+                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
                 renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
@@ -341,8 +333,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
                 readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -355,7 +347,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
                 readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
                 readonly currentBytesRequested: number;
@@ -365,19 +357,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
+            } & {
                 afterAttach(): void;
-                estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                    headers?: Record<string, string> | undefined;
-                    signal?: AbortSignal | undefined;
-                    filters?: string[] | undefined;
-                }): Promise<{}>;
-                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionStats(): void;
+                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+                setRegionsStatsP(arg: any): void;
+                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                clearRegionsStats(): void;
                 setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
@@ -391,18 +380,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
+            } & {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
                 regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): {
-                    label: string;
-                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                        muiName: string;
-                    };
-                    onClick: () => void;
-                }[];
+                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
                 renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
@@ -585,8 +569,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
             message: string;
             featureIdUnderMouse: string | undefined;
             contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-            estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+            estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+            estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
         } & {
             readonly height: number;
             readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -599,7 +583,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
         } & {
             readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
             readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-            getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+            getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
             getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
             searchFeatureByID(id: string): [number, number, number, number] | undefined;
             readonly currentBytesRequested: number;
@@ -609,19 +593,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly maxAllowableBytes: number;
         } & {
             setMessage(message: string): void;
+        } & {
             afterAttach(): void;
-            estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                headers?: Record<string, string> | undefined;
-                signal?: AbortSignal | undefined;
-                filters?: string[] | undefined;
-            }): Promise<{}>;
-            setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-            setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-            clearRegionStats(): void;
+            estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+            setRegionsStatsP(arg: any): void;
+            setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+            clearRegionsStats(): void;
             setHeight(displayHeight: number): number;
             resizeHeight(distance: number): number;
             setScrollTop(scrollTop: number): void;
-            updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+            updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
             addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
             setCurrBpPerPx(n: number): void;
             deleteBlock(key: string): void;
@@ -635,18 +616,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly regionTooLargeReason: string;
         } & {
             reload(): Promise<void>;
+        } & {
             afterAttach(): void;
         } & {
             regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
             regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-            contextMenuItems(): {
-                label: string;
-                icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                    muiName: string;
-                };
-                onClick: () => void;
-            }[];
+            contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             renderProps(): any;
         } & {
             renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {

package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts

@@ -1,9 +1,7 @@
 /// <reference types="react" />
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const useStyles: (params: void, styleOverrides?: {
-    props: {
-        classes?: Record<string, string> | undefined;
-    } & Record<string, unknown>;
+    props: any;
     ownerState?: Record<string, unknown> | undefined;
 } | undefined) => {
     classes: Record<"linearBlocks" | "heightOverflowed", string>;

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js

@@ -1,4 +1,4 @@
-import React, { useEffect, useState } from 'react';
+import React from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getParent } from 'mobx-state-tree';
@@ -20,40 +20,28 @@ const useStyles = makeStyles()(theme => {
 });
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 const LoadingMessage = observer(({ model }) => {
-    // only show the loading message after 300ms to prevent excessive flickering
-    const [shown, setShown] = useState(false);
     const { classes } = useStyles();
-    useEffect(() => {
-        let killed = false;
-        const timeout = setTimeout(() => {
-            if (!killed) {
-                setShown(true);
-            }
-        }, 300);
-        return () => {
-            clearTimeout(timeout);
-            killed = true;
-        };
-    }, []);
     const { status: blockStatus } = model;
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
     const { message: displayStatus } = getParent(model, 2);
     const status = displayStatus || blockStatus;
-    return (React.createElement(React.Fragment, null, shown ? (React.createElement("div", { className: classes.loading },
-        React.createElement(LoadingEllipses, { message: status }))) : null));
+    return (React.createElement("div", { className: classes.loading },
+        React.createElement(LoadingEllipses, { message: status })));
 });
 const ServerSideRenderedBlockContent = observer(function ({ model, }) {
     if (model.error) {
         return (React.createElement(BlockMsg, { message: `${model.error}`, severity: "error", buttonText: "reload", icon: React.createElement(RefreshIcon, null), action: model.reload }));
     }
-    if (model.message) {
+    else if (model.message) {
         // the message can be a fully rendered react component, e.g. the region too large message
         return React.isValidElement(model.message) ? (model.message) : (React.createElement(BlockMsg, { message: `${model.message}`, severity: "info" }));
     }
-    if (!model.filled) {
+    else if (!model.filled) {
         return React.createElement(LoadingMessage, { model: model });
     }
-    return model.reactElement;
+    else {
+        return model.reactElement;
+    }
 });
 export default ServerSideRenderedBlockContent;
 //# sourceMappingURL=ServerSideRenderedBlockContent.js.map

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ServerSideRenderedBlockContent.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC3C,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAElD,QAAQ;AACR,OAAO,WAAW,MAAM,6BAA6B,CAAA;AAErD,SAAS;AACT,OAAO,QAAQ,MAAM,YAAY,CAAA;AAEjC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB,CAAA;IAClD,OAAO;QACL,OAAO,EAAE;YACP,WAAW,EAAE,OAAO;YACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;YACjD,eAAe,EAAE,kEAAkE,EAAE,SAAS,EAAE,QAAQ;YACxG,SAAS,EAAE,QAAQ;SACpB;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,8DAA8D;AAC9D,MAAM,cAAc,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC5D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrC,8DAA8D;IAC9D,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,SAAS,CAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC3D,MAAM,MAAM,GAAG,aAAa,IAAI,WAAW,CAAA;IAC3C,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC7B,oBAAC,eAAe,IAAC,OAAO,EAAE,MAAM,GAAI,CAChC,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,8BAA8B,GAAG,QAAQ,CAAC,UAAU,EACxD,KAAK,GAIN;IACC,IAAI,KAAK,CAAC,KAAK,EAAE;QACf,OAAO,CACL,oBAAC,QAAQ,IACP,OAAO,EAAE,GAAG,KAAK,CAAC,KAAK,EAAE,EACzB,QAAQ,EAAC,OAAO,EAChB,UAAU,EAAC,QAAQ,EACnB,IAAI,EAAE,oBAAC,WAAW,OAAG,EACrB,MAAM,EAAE,KAAK,CAAC,MAAM,GACpB,CACH,CAAA;KACF;SAAM,IAAI,KAAK,CAAC,OAAO,EAAE;QACxB,yFAAyF;QACzF,OAAO,KAAK,CAAC,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAC3C,KAAK,CAAC,OAAO,CACd,CAAC,CAAC,CAAC,CACF,oBAAC,QAAQ,IAAC,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,EAAE,EAAE,QAAQ,EAAC,MAAM,GAAG,CAC1D,CAAA;KACF;SAAM,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;QACxB,OAAO,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACxC;SAAM;QACL,OAAO,KAAK,CAAC,YAAY,CAAA;KAC1B;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,8BAA8B,CAAA"}

package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts

@@ -3,8 +3,8 @@ import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
 declare function TooLargeMessage({ model, }: {
     model: {
         regionTooLargeReason: string;
-        estimatedRegionStats?: Stats;
-        updateStatsLimit: (s: Stats) => void;
+        estimatedRegionsStats?: Stats;
+        updateStatsLimit: (s?: Stats) => void;
         reload: () => void;
     };
 }): JSX.Element;

package/esm/BaseLinearDisplay/components/TooLargeMessage.js

@@ -1,16 +1,12 @@
 import React from 'react';
+// locals
 import BlockMsg from '../components/BlockMsg';
 function TooLargeMessage({ model, }) {
     const { regionTooLargeReason } = model;
     return (React.createElement(BlockMsg, { severity: "warning", action: () => {
-            if (!model.estimatedRegionStats) {
-                console.error('No global stats?');
-            }
-            else {
-                model.updateStatsLimit(model.estimatedRegionStats);
-                model.reload();
-            }
-        }, buttonText: "Force load", message: `${regionTooLargeReason ? regionTooLargeReason + '. ' : ''}
+            model.updateStatsLimit(model.estimatedRegionsStats);
+            model.reload();
+        }, buttonText: "Force load", message: `${regionTooLargeReason ? `${regionTooLargeReason}. ` : ''}
       Zoom in to see features or force load (may be slow).` }));
 }
 export default TooLargeMessage;

package/esm/BaseLinearDisplay/components/TooLargeMessage.js.map

@@ -1 +1 @@
-{"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/TooLargeMessage.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,QAAQ,MAAM,wBAAwB,CAAA;AAG7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,oBAAC,QAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,IAAI,CAAC,KAAK,CAAC,oBAAoB,EAAE;gBAC/B,OAAO,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAA;aAClC;iBAAM;gBACL,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,oBAAoB,CAAC,CAAA;gBAClD,KAAK,CAAC,MAAM,EAAE,CAAA;aACf;QACH,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE,GAAG,oBAAoB,CAAC,CAAC,CAAC,oBAAoB,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE;2DACd,GACrD,CACH,CAAA;AACH,CAAC;AAED,eAAe,eAAe,CAAA"}
+{"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/TooLargeMessage.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAGzB,SAAS;AACT,OAAO,QAAQ,MAAM,wBAAwB,CAAA;AAE7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,oBAAC,QAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAA;YACnD,KAAK,CAAC,MAAM,EAAE,CAAA;QAChB,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE,GAAG,oBAAoB,CAAC,CAAC,CAAC,GAAG,oBAAoB,IAAI,CAAC,CAAC,CAAC,EAAE;2DACd,GACrD,CACH,CAAA;AACH,CAAC;AAED,eAAe,eAAe,CAAA"}

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts

@@ -1,4 +1,5 @@
 import React from 'react';
+import { ThemeOptions } from '@mui/material';
 import { MenuItem } from '@jbrowse/core/ui';
 import { Feature } from '@jbrowse/core/util';
 import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
@@ -7,7 +8,6 @@ import { Region } from '@jbrowse/core/util/types';
 import CompositeMap from '@jbrowse/core/util/compositeMap';
 import { Instance } from 'mobx-state-tree';
 import { ExportSvgOptions } from '../../LinearGenomeView';
-import { ThemeOptions } from '@mui/material';
 export interface Layout {
     minX: number;
     minY: number;
@@ -117,9 +117,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
-             * #property
-             */
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
             error: unknown;
@@ -136,11 +134,6 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
 } & {
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
-    /**
-     * #getter
-     * returns a string feature ID if the globally-selected object
-     * is probably a feature
-     */
     reload(): void;
 } & {
     currBpPerPx: number;
@@ -148,8 +141,8 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: Feature | undefined;
-    estimatedRegionStatsP: Promise<Stats> | undefined;
-    estimatedRegionStats: Stats | undefined;
+    estimatedRegionsStatsP: Promise<Stats> | undefined;
+    estimatedRegionsStats: Stats | undefined;
 } & {
     readonly height: number;
     /**
@@ -197,7 +190,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #getter
      */
-    getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
     /**
      * #getter
      */
@@ -231,27 +224,24 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      * #action
      */
     setMessage(message: string): void;
+} & {
     afterAttach(): void;
     /**
      * #action
      */
-    estimateRegionsStats(regions: Region[], opts: {
-        headers?: Record<string, string>;
-        signal?: AbortSignal;
-        filters?: string[];
-    }): Promise<{}>;
+    estimateRegionsStats(): Promise<Stats>;
     /**
      * #action
      */
-    setRegionStatsP(p?: Promise<Stats>): void;
+    setRegionsStatsP(arg: any): void;
     /**
      * #action
      */
-    setRegionStats(estimatedRegionStats?: Stats): void;
+    setRegionsStats(estimatedRegionsStats?: Stats): void;
     /**
      * #action
      */
-    clearRegionStats(): void;
+    clearRegionsStats(): void;
     /**
      * #action
      */
@@ -267,7 +257,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #action
      */
-    updateStatsLimit(stats: Stats): void;
+    updateStatsLimit(stats?: Stats): void;
     /**
      * #action
      */
@@ -320,6 +310,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      * #action
      */
     reload(): Promise<void>;
+} & {
     afterAttach(): void;
 } & {
     /**
@@ -342,13 +333,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #method
      */
-    contextMenuItems(): {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-    }[];
+    contextMenuItems(): MenuItem[];
     /**
      * #method
      */