npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.3.3 → 2.3.4 - Mend

@jbrowse/plugin-linear-genome-view 2.3.3 → 2.3.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (17) hide show

package/dist/LinearGenomeView/components/GetSequenceDialog.js CHANGED Viewed

@@ -133,7 +133,10 @@ function SequenceDialog({ model, handleClose, }) {
             if (comp) {
                 chunkSeq = (0, util_1.complement)(chunkSeq);
             }
-            return { header: chunkLocstring, seq: chunkSeq };
+            return {
+                header: chunkLocstring + (rev ? '-rev' : '') + (comp ? '-comp' : ''),
+                seq: chunkSeq,
+            };
         }))
         : '';
     const sequenceTooLarge = sequence ? sequence.length > 1000000 : false;

package/dist/LinearGenomeView/components/GetSequenceDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/LinearGenomeView/components/TrackLabel.js CHANGED Viewed

@@ -18,6 +18,7 @@ const DragIndicator_1 = __importDefault(require("@mui/icons-material/DragIndicat
 const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const Minimize_1 = __importDefault(require("@mui/icons-material/Minimize"));
 const Add_1 = __importDefault(require("@mui/icons-material/Add"));
+const ui_1 = require("@jbrowse/core/ui");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     root: {
         background: (0, material_1.alpha)(theme.palette.background.paper, 0.8),
@@ -81,7 +82,8 @@ const TrackLabel = react_1.default.forwardRef(({ track, className }, ref) => {
             react_1.default.createElement(DragIndicator_1.default, { className: classes.dragHandleIcon, fontSize: "small" })),
         react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
             react_1.default.createElement(Close_1.default, { fontSize: "small" })),
-        react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName + (minimized ? ' (minimized)' : '')),
+        react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName },
+            react_1.default.createElement(ui_1.SanitizedHTML, { html: trackName + (minimized ? ' (minimized)' : '') })),
         react_1.default.createElement(material_1.IconButton, { ...(0, hooks_1.bindTrigger)(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
             react_1.default.createElement(MoreVert_1.default, { fontSize: "small" })),
         react_1.default.createElement(CascadingMenu_1.default, { ...(0, hooks_1.bindPopover)(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));

package/dist/LinearGenomeView/components/TrackLabel.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAoE;AACpE,uCAA0C;AAC1C,2CAAqC;AACrC,+DAAqD;AACrD,mFAA0D;AAC1D,6CAAkE;AAClE,sDAAwD;AAGxD,yDAIsC;AAEtC,QAAQ;AACR,4EAAuD;AACvD,sFAAwD;AACxD,sEAAiD;AACjD,4EAAuD;AACvD,kEAA6C;AAG7C,yCAAgD;AAEhD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,MAAM,UAAU,GAAG,eAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,IAAA,qBAAY,EAAC,SAAS,EAAE,OAAO,CAAC,CAAA;IAElD,MAAM,UAAU,GAAG,IAAA,qBAAa,EAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,KAAK,GAAG;QACZ;YACE,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,gBAAgB;YACrD,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,aAAO,CAAC,CAAC,CAAC,kBAAY;YACxC,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,SAAS,CAAC;SAC9C;QACD,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,8BAAC,gBAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,wCACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;gBAClC,IAAI,MAAM,CAAC,UAAU,EAAE;oBACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;oBAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;oBAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;iBAClC;YACH,CAAC,EACD,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,8BAAC,uBAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,8BAAC,eAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QAEb,8BAAC,qBAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS;YAE5B,8BAAC,kBAAa,IAAC,IAAI,EAAE,SAAS,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,GAAI,CAC3D;QACb,8BAAC,qBAAU,OACL,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,8BAAC,kBAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,8BAAC,uBAAa,OACR,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}

package/dist/LinearGenomeView/model.js CHANGED Viewed

@@ -153,12 +153,12 @@ function stateModelFactory(pluginManager) {
          * #property
          * show the "center line"
          */
-        showCenterLine: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => JSON.parse((0, util_1.localStorageGetItem)('lgv-showCenterLine') || 'false')),
+        showCenterLine: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => Boolean(JSON.parse((0, util_1.localStorageGetItem)('lgv-showCenterLine') || 'false'))),
         /**
          * #property
          * show the "cytobands" in the overview scale bar
          */
-        showCytobandsSetting: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => JSON.parse((0, util_1.localStorageGetItem)('lgv-showCytobands') || 'true')),
+        showCytobandsSetting: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => Boolean(JSON.parse((0, util_1.localStorageGetItem)('lgv-showCytobands') || 'true'))),
         /**
          * #property
          * show the "gridlines" in the track area

package/dist/LinearGenomeView/model.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/GetSequenceDialog.js CHANGED Viewed

@@ -105,7 +105,10 @@ function SequenceDialog({ model, handleClose, }) {
             if (comp) {
                 chunkSeq = complement(chunkSeq);
             }
-            return { header: chunkLocstring, seq: chunkSeq };
+            return {
+                header: chunkLocstring + (rev ? '-rev' : '') + (comp ? '-comp' : ''),
+                seq: chunkSeq,
+            };
         }))
         : '';
     const sequenceTooLarge = sequence ? sequence.length > 1000000 : false;

package/esm/LinearGenomeView/components/GetSequenceDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/TrackLabel.js CHANGED Viewed

@@ -13,6 +13,7 @@ import DragIcon from '@mui/icons-material/DragIndicator';
 import CloseIcon from '@mui/icons-material/Close';
 import MinimizeIcon from '@mui/icons-material/Minimize';
 import AddIcon from '@mui/icons-material/Add';
+import { SanitizedHTML } from '@jbrowse/core/ui';
 const useStyles = makeStyles()(theme => ({
     root: {
         background: alpha(theme.palette.background.paper, 0.8),
@@ -76,7 +77,8 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
             React.createElement(DragIcon, { className: classes.dragHandleIcon, fontSize: "small" })),
         React.createElement(IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
             React.createElement(CloseIcon, { fontSize: "small" })),
-        React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName + (minimized ? ' (minimized)' : '')),
+        React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName },
+            React.createElement(SanitizedHTML, { html: trackName + (minimized ? ' (minimized)' : '') })),
         React.createElement(IconButton, { ...bindTrigger(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
             React.createElement(MoreVertIcon, { fontSize: "small" })),
         React.createElement(CascadingMenu, { ...bindPopover(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));

package/esm/LinearGenomeView/components/TrackLabel.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAA;AAGxD,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,OAAO,MAAM,yBAAyB,CAAA;AAG7C,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAEhD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,MAAM,UAAU,GAAG,KAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,SAAS,EAAE,OAAO,CAAC,CAAA;IAElD,MAAM,UAAU,GAAG,aAAa,CAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,KAAK,GAAG;QACZ;YACE,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,gBAAgB;YACrD,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,YAAY;YACxC,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,SAAS,CAAC;SAC9C;QACD,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,KAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,8BACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;gBAClC,IAAI,MAAM,CAAC,UAAU,EAAE;oBACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;oBAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;oBAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;iBAClC;YACH,CAAC,EACD,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,oBAAC,QAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,oBAAC,SAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QAEb,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS;YAE5B,oBAAC,aAAa,IAAC,IAAI,EAAE,SAAS,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,GAAI,CAC3D;QACb,oBAAC,UAAU,OACL,WAAW,CAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,oBAAC,YAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,oBAAC,aAAa,OACR,WAAW,CAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}

package/esm/LinearGenomeView/model.js CHANGED Viewed

@@ -119,12 +119,12 @@ export function stateModelFactory(pluginManager) {
          * #property
          * show the "center line"
          */
-        showCenterLine: types.optional(types.boolean, () => JSON.parse(localStorageGetItem('lgv-showCenterLine') || 'false')),
+        showCenterLine: types.optional(types.boolean, () => Boolean(JSON.parse(localStorageGetItem('lgv-showCenterLine') || 'false'))),
         /**
          * #property
          * show the "cytobands" in the overview scale bar
          */
-        showCytobandsSetting: types.optional(types.boolean, () => JSON.parse(localStorageGetItem('lgv-showCytobands') || 'true')),
+        showCytobandsSetting: types.optional(types.boolean, () => Boolean(JSON.parse(localStorageGetItem('lgv-showCytobands') || 'true'))),
         /**
          * #property
          * show the "gridlines" in the track area

package/esm/LinearGenomeView/model.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "2.3.3",
+  "version": "2.3.4",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -66,5 +66,5 @@
     "access": "public"
   },
   "module": "esm/index.js",
-  "gitHead": "283e0387ccd5acc9f092cf00804d1fcac212e68d"
+  "gitHead": "98ae48be91ee2371e1b2768a907b4997995e9915"
 }

package/src/LinearGenomeView/components/GetSequenceDialog.tsx CHANGED Viewed

@@ -161,7 +161,11 @@ function SequenceDialog({
             if (comp) {
               chunkSeq = complement(chunkSeq)
             }
-            return { header: chunkLocstring, seq: chunkSeq }
+            return {
+              header:
+                chunkLocstring + (rev ? '-rev' : '') + (comp ? '-comp' : ''),
+              seq: chunkSeq,
+            }
           }),
       )
     : ''

package/src/LinearGenomeView/components/TrackLabel.tsx CHANGED Viewed

@@ -22,6 +22,7 @@ import MinimizeIcon from '@mui/icons-material/Minimize'
 import AddIcon from '@mui/icons-material/Add'
 import { LinearGenomeViewModel } from '..'
+import { SanitizedHTML } from '@jbrowse/core/ui'
 const useStyles = makeStyles()(theme => ({
   root: {
@@ -117,7 +118,7 @@ const TrackLabel = React.forwardRef<HTMLDivElement, Props>(
           component="span"
           className={classes.trackName}
         >
-          {trackName + (minimized ? ' (minimized)' : '')}
+          <SanitizedHTML html={trackName + (minimized ? ' (minimized)' : '')} />
         </Typography>
         <IconButton
           {...bindTrigger(popupState)}

package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap CHANGED Viewed

@@ -275,7 +275,7 @@ exports[`renders one track, one region 1`] = `
               style="left: 0%; width: 0%;"
             />
             <span
-              class="MuiSlider-thumb MuiSlider-thumbColorPrimary MuiSlider-thumbSizeSmall css-14gf62f-MuiSlider-thumb"
+              class="MuiSlider-thumb MuiSlider-thumbSizeSmall MuiSlider-thumbColorPrimary css-14gf62f-MuiSlider-thumb"
               data-focusvisible="false"
               data-index="0"
               style="left: 0%;"
@@ -471,7 +471,9 @@ exports[`renders one track, one region 1`] = `
         <span
           class="MuiTypography-root MuiTypography-body1 css-877agm-MuiTypography-root-trackName"
         >
-          Foo Track
+          <span>
+            Foo Track
+          </span>
         </span>
         <button
           aria-haspopup="true"
@@ -536,7 +538,6 @@ exports[`renders one track, one region 1`] = `
       <div
         class="css-14zcv15-horizontalHandle-resizeHandle"
         data-resizer="true"
-        role="presentation"
       />
     </div>
   </div>
@@ -836,7 +837,7 @@ exports[`renders two tracks, two regions 1`] = `
               style="left: 0%; width: 9.774680693120512%;"
             />
             <span
-              class="MuiSlider-thumb MuiSlider-thumbColorPrimary MuiSlider-thumbSizeSmall css-14gf62f-MuiSlider-thumb"
+              class="MuiSlider-thumb MuiSlider-thumbSizeSmall MuiSlider-thumbColorPrimary css-14gf62f-MuiSlider-thumb"
               data-focusvisible="false"
               data-index="0"
               style="left: 9.774680693120512%;"
@@ -1267,7 +1268,9 @@ exports[`renders two tracks, two regions 1`] = `
         <span
           class="MuiTypography-root MuiTypography-body1 css-877agm-MuiTypography-root-trackName"
         >
-          Foo Track
+          <span>
+            Foo Track
+          </span>
         </span>
         <button
           aria-haspopup="true"
@@ -1348,7 +1351,6 @@ exports[`renders two tracks, two regions 1`] = `
       <div
         class="css-14zcv15-horizontalHandle-resizeHandle"
         data-resizer="true"
-        role="presentation"
       />
     </div>
     <div
@@ -1398,7 +1400,9 @@ exports[`renders two tracks, two regions 1`] = `
         <span
           class="MuiTypography-root MuiTypography-body1 css-877agm-MuiTypography-root-trackName"
         >
-          Bar Track
+          <span>
+            Bar Track
+          </span>
         </span>
         <button
           aria-haspopup="true"
@@ -1479,7 +1483,6 @@ exports[`renders two tracks, two regions 1`] = `
       <div
         class="css-14zcv15-horizontalHandle-resizeHandle"
         data-resizer="true"
-        role="presentation"
       />
     </div>
   </div>

package/src/LinearGenomeView/model.ts CHANGED Viewed

@@ -205,7 +205,9 @@ export function stateModelFactory(pluginManager: PluginManager) {
          * show the "center line"
          */
         showCenterLine: types.optional(types.boolean, () =>
-          JSON.parse(localStorageGetItem('lgv-showCenterLine') || 'false'),
+          Boolean(
+            JSON.parse(localStorageGetItem('lgv-showCenterLine') || 'false'),
+          ),
         ),
         /**
@@ -213,7 +215,9 @@ export function stateModelFactory(pluginManager: PluginManager) {
          * show the "cytobands" in the overview scale bar
          */
         showCytobandsSetting: types.optional(types.boolean, () =>
-          JSON.parse(localStorageGetItem('lgv-showCytobands') || 'true'),
+          Boolean(
+            JSON.parse(localStorageGetItem('lgv-showCytobands') || 'true'),
+          ),
         ),
         /**