@jbrowse/plugin-linear-genome-view 2.2.2 → 2.3.1

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map

@@ -1 +1 @@
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package/esm/BaseLinearDisplay/models/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default baseLinearDisplayConfigSchema;

package/esm/BaseLinearDisplay/models/{baseLinearDisplayConfigSchema.js → configSchema.js}

@@ -1,12 +1,12 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
 /**
  * #config BaseLinearDisplay
- * BaseLinearDisplay is a "base" config that is extended by classes like
- * "LinearBasicDisplay" (used for feature tracks, etc) and "LinearBareDisplay"
+ * `BaseLinearDisplay` is a "base" config that is extended by classes like
+ * `LinearBasicDisplay` (used for feature tracks, etc) and `LinearBareDisplay`
  * (more stripped down than even the basic display, not commonly used)
  */
 function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
-export const baseLinearDisplayConfigSchema = ConfigurationSchema('BaseLinearDisplay', {
+const baseLinearDisplayConfigSchema = ConfigurationSchema('BaseLinearDisplay', {
     /**
      * #slot
      */
@@ -29,4 +29,5 @@ export const baseLinearDisplayConfigSchema = ConfigurationSchema('BaseLinearDisp
      */
     explicitIdentifier: 'displayId',
 });
-//# sourceMappingURL=baseLinearDisplayConfigSchema.js.map
+export default baseLinearDisplayConfigSchema;
+//# sourceMappingURL=configSchema.js.map

package/esm/BaseLinearDisplay/models/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;;;;GAKG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,6BAA6B,GAAG,mBAAmB,CACvD,mBAAmB,EACnB;IACE;;OAEG;IACH,uBAAuB,EAAE;QACvB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,qGAAqG;QACvG,YAAY,EAAE,GAAG;KAClB;IACD;;OAEG;IACH,cAAc,EAAE;QACd,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,OAAS;QACvB,WAAW,EACT,4FAA4F;KAC/F;CACF,EACD;IACE;;OAEG;IACH,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AAED,eAAe,6BAA6B,CAAA"}

package/esm/BaseLinearDisplay/models/util.d.ts

@@ -0,0 +1,18 @@
+export interface RenderProps {
+    rendererType: any;
+    renderArgs: {
+        [key: string]: any;
+    };
+    renderProps: {
+        [key: string]: any;
+    };
+    displayError: unknown;
+    rpcManager: {
+        call: Function;
+    };
+    cannotBeRenderedReason: string;
+}
+export interface ErrorProps {
+    displayError: string;
+}
+export declare function getDisplayStr(totalBytes: number): string;

package/esm/BaseLinearDisplay/models/util.js

@@ -0,0 +1,14 @@
+export function getDisplayStr(totalBytes) {
+    let displayBp;
+    if (Math.floor(totalBytes / 1000000) > 0) {
+        displayBp = `${parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
+    }
+    else if (Math.floor(totalBytes / 1000) > 0) {
+        displayBp = `${parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
+    }
+    else {
+        displayBp = `${Math.floor(totalBytes)} bytes`;
+    }
+    return displayBp;
+}
+//# sourceMappingURL=util.js.map

package/esm/BaseLinearDisplay/models/util.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/util.ts"],"names":[],"mappings":"AAaA,MAAM,UAAU,aAAa,CAAC,UAAkB;IAC9C,IAAI,SAAS,CAAA;IACb,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE;QACxC,SAAS,GAAG,GAAG,UAAU,CAAC,CAAC,UAAU,GAAG,OAAO,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;KACtE;SAAM,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE;QAC5C,SAAS,GAAG,GAAG,UAAU,CAAC,CAAC,UAAU,GAAG,IAAI,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;KACnE;SAAM;QACL,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,QAAQ,CAAA;KAC9C;IACD,OAAO,SAAS,CAAA;AAClB,CAAC"}

package/esm/FeatureTrack/index.d.ts

@@ -1,3 +1,3 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
+declare const _default: (pm: PluginManager) => void;
 export default _default;

package/esm/FeatureTrack/index.js

@@ -1,12 +1,13 @@
 import { createBaseTrackModel, TrackType, } from '@jbrowse/core/pluggableElementTypes';
 import configSchemaF from './configSchema';
-export default (pluginManager) => {
-    pluginManager.addTrackType(() => {
-        const configSchema = configSchemaF(pluginManager);
+export default (pm) => {
+    pm.addTrackType(() => {
+        const configSchema = configSchemaF(pm);
         return new TrackType({
             name: 'FeatureTrack',
+            displayName: 'Feature track',
             configSchema,
-            stateModel: createBaseTrackModel(pluginManager, 'FeatureTrack', configSchema),
+            stateModel: createBaseTrackModel(pm, 'FeatureTrack', configSchema),
         });
     });
 };

package/esm/FeatureTrack/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FeatureTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,oBAAoB,EACpB,SAAS,GACV,MAAM,qCAAqC,CAAA;AAE5C,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,aAAa,CAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,cAAc;YACpB,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,cAAc,EACd,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FeatureTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,oBAAoB,EACpB,SAAS,GACV,MAAM,qCAAqC,CAAA;AAE5C,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,EAAiB,EAAE,EAAE;IACnC,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE;QACnB,MAAM,YAAY,GAAG,aAAa,CAAC,EAAE,CAAC,CAAA;QACtC,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,cAAc;YACpB,WAAW,EAAE,eAAe;YAC5B,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAAC,EAAE,EAAE,cAAc,EAAE,YAAY,CAAC;SACnE,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/esm/LinearBareDisplay/index.js

@@ -1,7 +1,8 @@
 import { DisplayType } from '@jbrowse/core/pluggableElementTypes';
-import { BaseLinearDisplayComponent } from '../BaseLinearDisplay';
+// locals
 import { configSchemaFactory } from './configSchema';
 import { stateModelFactory } from './model';
+import { BaseLinearDisplayComponent } from '../BaseLinearDisplay/';
 export default (pluginManager) => {
     pluginManager.addDisplayType(() => {
         const configSchema = configSchemaFactory(pluginManager);

package/esm/LinearBareDisplay/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearBareDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AAEjE,SAAS;AACT,OAAO,EAAE,mBAAmB,EAAE,MAAM,gBAAgB,CAAA;AACpD,OAAO,EAAE,iBAAiB,EAAE,MAAM,SAAS,CAAA;AAC3C,OAAO,EAAE,0BAA0B,EAAE,MAAM,uBAAuB,CAAA;AAElE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,mBAAmB;YACzB,YAAY;YACZ,UAAU,EAAE,iBAAiB,CAAC,YAAY,CAAC;YAC3C,SAAS,EAAE,YAAY;YACvB,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,0BAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,OAAO,EAAE,mBAAmB,EAAE,iBAAiB,EAAE,CAAA"}

package/esm/LinearBareDisplay/model.d.ts

@@ -121,10 +121,10 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     reload(): void;
 } & {
     currBpPerPx: number;
+    scrollTop: number;
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-    scrollTop: number;
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {

package/esm/LinearBasicDisplay/index.js

@@ -8,6 +8,7 @@ export default (pluginManager) => {
         const config = configSchema(pluginManager);
         return new DisplayType({
             name: 'LinearBasicDisplay',
+            displayName: 'Basic deature display',
             configSchema: config,
             stateModel: modelFactory(config),
             trackType: 'FeatureTrack',

package/esm/LinearBasicDisplay/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearBasicDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AACjE,OAAO,EAAE,0BAA0B,EAAE,MAAM,sBAAsB,CAAA;AAEjE,SAAS;AACT,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,YAAY,MAAM,SAAS,CAAA;AAElC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,MAAM,GAAG,YAAY,CAAC,aAAa,CAAC,CAAA;QAC1C,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,oBAAoB;YAC1B,YAAY,EAAE,MAAM;YACpB,UAAU,EAAE,YAAY,CAAC,MAAM,CAAC;YAChC,SAAS,EAAE,cAAc;YACzB,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,0BAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearBasicDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AACjE,OAAO,EAAE,0BAA0B,EAAE,MAAM,sBAAsB,CAAA;AAEjE,SAAS;AACT,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,YAAY,MAAM,SAAS,CAAA;AAElC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,MAAM,GAAG,YAAY,CAAC,aAAa,CAAC,CAAA;QAC1C,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,oBAAoB;YAC1B,WAAW,EAAE,uBAAuB;YACpC,YAAY,EAAE,MAAM;YACpB,UAAU,EAAE,YAAY,CAAC,MAAM,CAAC;YAChC,SAAS,EAAE,cAAc;YACzB,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,0BAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,CAAA"}

package/esm/LinearBasicDisplay/model.d.ts

@@ -12,9 +12,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    /**
-     * #getter
-     */
     height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
@@ -159,10 +156,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     reload(): void;
 } & {
     currBpPerPx: number;
+    scrollTop: number;
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-    scrollTop: number;
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {

package/esm/LinearGenomeView/components/ImportForm.js

@@ -61,10 +61,14 @@ const ImportForm = observer(({ model }) => {
     // 2) if it's a single result navigate to it
     // 3) else assume it's a locstring and navigate to it
     async function handleSelectedRegion(input) {
+        var _a;
         try {
             if ((option === null || option === void 0 ? void 0 : option.getDisplayString()) === input && option.hasLocation()) {
                 await navToOption(option);
             }
+            else if ((_a = option === null || option === void 0 ? void 0 : option.results) === null || _a === void 0 ? void 0 : _a.length) {
+                model.setSearchResults(option.results, option.getLabel());
+            }
             else {
                 const [ref, rest] = splitLast(input, ':');
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
@@ -117,7 +121,7 @@ const ImportForm = observer(({ model }) => {
                             React.createElement(AssemblySelector, { onChange: val => {
                                     setSelectedAsm(val);
                                     setValue('');
-                                }, session: session, selected: selectedAsm }))),
+                                }, localStorageKey: "lgv", session: session, selected: selectedAsm }))),
                     React.createElement(Grid, { item: true }, selectedAsm ? (assemblyError ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : value ? (React.createElement(FormControl, null,
                         React.createElement(RefNameAutocomplete, { fetchResults: queryString => fetchResults({
                                 queryString,

package/esm/LinearGenomeView/components/ImportForm.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js

@@ -121,8 +121,7 @@ export async function renderToSvg(model, opts) {
     const displayResults = await Promise.all(tracks.map(async (track) => {
         const display = track.displays[0];
         await when(() => (display.ready !== undefined ? display.ready : true));
-        const result = await display.renderSvg(opts);
-        return { track, result };
+        return { track, result: await display.renderSvg(opts) };
     }));
     // the xlink namespace is used for rendering <image> tag
     return renderToStaticMarkup(React.createElement(Wrapper, null,

package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/Ruler.d.ts

@@ -1,27 +1,11 @@
 /// <reference types="react" />
-import ReactPropTypes from 'prop-types';
 declare function Ruler({ start, end, bpPerPx, reversed, major, minor, }: {
     start: number;
     end: number;
     bpPerPx: number;
     reversed?: boolean;
-    major: boolean;
-    minor: boolean;
+    major?: boolean;
+    minor?: boolean;
 }): JSX.Element;
-declare namespace Ruler {
-    var propTypes: {
-        start: ReactPropTypes.Validator<number>;
-        end: ReactPropTypes.Validator<number>;
-        bpPerPx: ReactPropTypes.Validator<number>;
-        reversed: ReactPropTypes.Requireable<boolean>;
-        major: ReactPropTypes.Requireable<boolean>;
-        minor: ReactPropTypes.Requireable<boolean>;
-    };
-    var defaultProps: {
-        reversed: boolean;
-        major: boolean;
-        minor: boolean;
-    };
-}
 declare const _default: typeof Ruler;
 export default _default;

package/esm/LinearGenomeView/components/Ruler.js

@@ -1,24 +1,21 @@
+import React from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
-import ReactPropTypes from 'prop-types';
-import React from 'react';
-import { makeTicks } from '../util';
 import { getTickDisplayStr } from '@jbrowse/core/util';
-const useStyles = makeStyles()(( /* theme */) => ({
+// locals
+import { makeTicks } from '../util';
+const useStyles = makeStyles()({
     majorTickLabel: {
         fontSize: '11px',
-        // fill: theme.palette.text.primary,
     },
     majorTick: {
         stroke: '#555',
-        // stroke: theme.palette.text.secondary,
     },
     minorTick: {
         stroke: '#999',
-        // stroke: theme.palette.text.hint,
     },
-}));
-function Ruler({ start, end, bpPerPx, reversed, major, minor, }) {
+});
+function Ruler({ start, end, bpPerPx, reversed = false, major = true, minor = true, }) {
     const { classes } = useStyles();
     const ticks = makeTicks(start, end, bpPerPx, major, minor);
     return (React.createElement(React.Fragment, null,
@@ -33,18 +30,5 @@ function Ruler({ start, end, bpPerPx, reversed, major, minor, }) {
             return (React.createElement("text", { x: x - 3, y: 7 + 11, key: `label-${tick.base}`, style: { fontSize: '11px' }, className: classes.majorTickLabel }, getTickDisplayStr(tick.base + 1, bpPerPx)));
         })));
 }
-Ruler.propTypes = {
-    start: ReactPropTypes.number.isRequired,
-    end: ReactPropTypes.number.isRequired,
-    bpPerPx: ReactPropTypes.number.isRequired,
-    reversed: ReactPropTypes.bool,
-    major: ReactPropTypes.bool,
-    minor: ReactPropTypes.bool,
-};
-Ruler.defaultProps = {
-    reversed: false,
-    major: true,
-    minor: true,
-};
 export default observer(Ruler);
 //# sourceMappingURL=Ruler.js.map

package/esm/LinearGenomeView/components/Ruler.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Ruler.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Ruler.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAEtD,SAAS;AACT,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAEnC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;KACjB;IACD,SAAS,EAAE;QACT,MAAM,EAAE,MAAM;KACf;IACD,SAAS,EAAE;QACT,MAAM,EAAE,MAAM;KACf;CACF,CAAC,CAAA;AAEF,SAAS,KAAK,CAAC,EACb,KAAK,EACL,GAAG,EACH,OAAO,EACP,QAAQ,GAAG,KAAK,EAChB,KAAK,GAAG,IAAI,EACZ,KAAK,GAAG,IAAI,GAQb;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,CAAA;IAC1D,OAAO,CACL;QACG,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YAChB,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;YACpE,OAAO,CACL,8BACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EACjC,WAAW,EAAE,CAAC,EACd,MAAM,EAAE,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EAC/C,SAAS,EACP,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,aAEtD,IAAI,CAAC,IAAI,GAClB,CACH,CAAA;QACH,CAAC,CAAC;QACD,KAAK;aACH,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC;aACrC,GAAG,CAAC,IAAI,CAAC,EAAE;YACV,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;YACpE,OAAO,CACL,8BACE,CAAC,EAAE,CAAC,GAAG,CAAC,EACR,CAAC,EAAE,CAAC,GAAG,EAAE,EACT,GAAG,EAAE,SAAS,IAAI,CAAC,IAAI,EAAE,EACzB,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,EAC3B,SAAS,EAAE,OAAO,CAAC,cAAc,IAEhC,iBAAiB,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,EAAE,OAAO,CAAC,CACrC,CACR,CAAA;QACH,CAAC,CAAC,CACH,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,KAAK,CAAC,CAAA"}

package/esm/LinearGenomeView/components/SearchBox.js

@@ -37,10 +37,14 @@ function SearchBox({ model, showHelp, }) {
     // 2) if it's a single result navigate to it
     // 3) else assume it's a locstring and navigate to it
     async function handleSelectedRegion(option) {
+        var _a;
         try {
             if (option.hasLocation()) {
                 await navToOption(option);
             }
+            else if ((_a = option.results) === null || _a === void 0 ? void 0 : _a.length) {
+                model.setSearchResults(option.results, option.getLabel());
+            }
             else {
                 const input = option.getLabel();
                 const [ref, rest] = splitLast(input, ':');

package/esm/LinearGenomeView/components/SearchBox.js.map

@@ -1 +1 @@
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+{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,QAAQ,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAG/C,SAAS;AACT,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,QAAQ,CAAA;AAChD,OAAO,EAAyB,OAAO,EAAE,aAAa,EAAE,MAAM,IAAI,CAAA;AAElE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,iBAAiB,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACtD,MAAM,EAAE,aAAa,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAClD,MAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,YAAY,CAAC,CAAA;IAEnD,KAAK,UAAU,WAAW,CAAC,MAAkB;QAC3C,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACnC,IAAI,QAAQ,EAAE;YACZ,MAAM,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;YAClD,IAAI,OAAO,EAAE;gBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;aACzB;SACF;IACH,CAAC;IAED,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,MAAkB;;QACpD,IAAI;YACF,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE;gBACxB,MAAM,WAAW,CAAC,MAAM,CAAC,CAAA;aAC1B;iBAAM,IAAI,MAAA,MAAM,CAAC,OAAO,0CAAE,MAAM,EAAE;gBACjC,KAAK,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAA;aAC1D;iBAAM;gBACL,MAAM,KAAK,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;gBAC/B,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACzC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,wBAAwB,KAAI,EAAE,CAAA;gBACxD,IACE,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;oBACvB,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EAC5D;oBACA,MAAM,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;iBAChD;qBAAM;oBACL,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC;wBACjC,WAAW,EAAE,KAAK;wBAClB,UAAU,EAAE,OAAO;wBACnB,WAAW;wBACX,iBAAiB;wBACjB,iBAAiB;wBACjB,QAAQ;qBACT,CAAC,CAAA;oBAEF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;wBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;qBACrD;yBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;wBAC/B,MAAM,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;qBAC9B;yBAAM;wBACL,MAAM,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;qBAChD;iBACF;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IACD,OAAO,CACL,oBAAC,mBAAmB,IAClB,QAAQ,EAAE,QAAQ,EAClB,QAAQ,EAAE,oBAAoB,EAC9B,YAAY,EAAE,YAAY,EAC1B,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,YAAY,CAAC;YACX,WAAW;YACX,WAAW;YACX,iBAAiB;YACjB,iBAAiB;YACjB,QAAQ;SACT,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE;YACd,OAAO,EAAE,UAAU;YACnB,SAAS,EAAE,OAAO,CAAC,aAAa;YAChC,KAAK,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE;YAC7C,UAAU,EAAE;gBACV,KAAK,EAAE;oBACL,OAAO,EAAE,CAAC;oBACV,MAAM,EAAE,aAAa;oBACrB,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;iBACvD;aACF;SACF,GACD,CACH,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,SAAS,CAAC,CAAA"}

package/esm/LinearGenomeView/index.js

@@ -4,6 +4,7 @@ import { stateModelFactory } from './model';
 export default (pluginManager) => {
     pluginManager.addViewType(() => new ViewType({
         name: 'LinearGenomeView',
+        displayName: 'Linear genome view',
         stateModel: stateModelFactory(pluginManager),
         ReactComponent: lazy(() => import('./components/LinearGenomeView')),
     }));

package/esm/LinearGenomeView/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearGenomeView/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,EAAE,QAAQ,EAAE,MAAM,qCAAqC,CAAA;AAC9D,OAAO,EAAE,iBAAiB,EAAE,MAAM,SAAS,CAAA;AAE3C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,WAAW,CACvB,GAAG,EAAE,CACH,IAAI,QAAQ,CAAC;QACX,IAAI,EAAE,kBAAkB;QACxB,UAAU,EAAE,iBAAiB,CAAC,aAAa,CAAC;QAC5C,cAAc,EAAE,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,+BAA+B,CAAC,CAAC;KACpE,CAAC,CACL,CAAA;AACH,CAAC,CAAA;AAED,cAAc,SAAS,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearGenomeView/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,EAAE,QAAQ,EAAE,MAAM,qCAAqC,CAAA;AAC9D,OAAO,EAAE,iBAAiB,EAAE,MAAM,SAAS,CAAA;AAE3C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,WAAW,CACvB,GAAG,EAAE,CACH,IAAI,QAAQ,CAAC;QACX,IAAI,EAAE,kBAAkB;QACxB,WAAW,EAAE,oBAAoB;QACjC,UAAU,EAAE,iBAAiB,CAAC,aAAa,CAAC;QAC5C,cAAc,EAAE,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,+BAA+B,CAAC,CAAC;KACpE,CAAC,CACL,CAAA;AACH,CAAC,CAAA;AAED,cAAc,SAAS,CAAA"}

package/esm/index.d.ts

@@ -1,7 +1,7 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockModel, baseLinearDisplayConfigSchema } from './BaseLinearDisplay';
+import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockModel, BlockMsg, baseLinearDisplayConfigSchema } from './BaseLinearDisplay';
 import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
 import { renderToSvg, LinearGenomeViewModel, LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
 import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
@@ -161,10 +161,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 reload(): void;
             } & {
                 currBpPerPx: number;
+                scrollTop: number;
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                scrollTop: number;
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
@@ -339,10 +339,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 reload(): void;
             } & {
                 currBpPerPx: number;
+                scrollTop: number;
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                scrollTop: number;
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
@@ -527,10 +527,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
             reload(): void;
         } & {
             currBpPerPx: number;
+            scrollTop: number;
             message: string;
             featureIdUnderMouse: string | undefined;
             contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            scrollTop: number;
             estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
             estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
         } & {
@@ -1793,6 +1793,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
-export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, };
+export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
 export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
 export type { BaseLinearDisplayModel } from './BaseLinearDisplay';

package/esm/index.js

@@ -2,7 +2,8 @@ import Plugin from '@jbrowse/core/Plugin';
 import { isAbstractMenuManager } from '@jbrowse/core/util';
 // icons
 import LineStyleIcon from '@mui/icons-material/LineStyle';
-import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
+// locals
+import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
 import LinearBareDisplayF, { configSchemaFactory as linearBareDisplayConfigSchemaFactory, } from './LinearBareDisplay';
 import LinearGenomeViewF, { renderToSvg, RefNameAutocomplete, SearchBox, ZoomControls, LinearGenomeView, } from './LinearGenomeView';
 import LinearBasicDisplayF, { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
@@ -42,5 +43,5 @@ export default class LinearGenomeViewPlugin extends Plugin {
         }
     }
 }
-export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, };
+export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
 //# sourceMappingURL=index.js.map

package/esm/index.js.map

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