@jbrowse/plugin-linear-genome-view 2.13.0 → 2.14.0

package/esm/index.d.ts

@@ -123,7 +123,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     error: unknown;
                     message: string | undefined;
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                onHorizontalScroll?: Function;
+                onHorizontalScroll?: () => void;
                 blockState?: Record<string, any>;
             }>;
             readonly DisplayBlurb: import("react").FC<{
@@ -360,419 +360,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
         ZoomControls: ({ model, }: {
             model: import("./LinearGenomeView").LinearGenomeViewModel;
         }) => import("react").JSX.Element;
-        LinearGenomeView: ({ model }: {
-            model: {
-                id: string;
-                displayName: string | undefined;
-                minimized: boolean;
-                type: string;
-                offsetPx: number;
-                bpPerPx: number;
-                displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
-                tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                hideHeader: boolean;
-                hideHeaderOverview: boolean;
-                hideNoTracksActive: boolean;
-                trackSelectorType: string;
-                showCenterLine: boolean;
-                showCytobandsSetting: boolean;
-                trackLabels: string;
-                showGridlines: boolean;
-                highlight: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>>;
-                colorByCDS: boolean;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                width: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                setDisplayName(name: string): void;
-                setWidth(newWidth: number): void;
-                setMinimized(flag: boolean): void;
-            } & {
-                volatileWidth: number | undefined;
-                minimumBlockWidth: number;
-                draggingTrackId: undefined | string;
-                volatileError: unknown;
-                afterDisplayedRegionsSetCallbacks: Function[];
-                scaleFactor: number;
-                trackRefs: Record<string, HTMLDivElement>;
-                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                coarseTotalBp: number;
-                leftOffset: undefined | import("./LinearGenomeView").BpOffset;
-                rightOffset: undefined | import("./LinearGenomeView").BpOffset;
-            } & {
-                scaleBarDisplayPrefix(): "";
-                readonly trackLabelsSetting: any;
-                readonly width: number;
-                readonly interRegionPaddingWidth: number;
-                readonly assemblyNames: string[];
-            } & {
-                MiniControlsComponent(): import("react").FC<any>;
-                HeaderComponent(): import("react").FC<any>;
-                readonly assemblyErrors: string;
-                readonly assembliesInitialized: boolean;
-                readonly initialized: boolean;
-                readonly hasDisplayedRegions: boolean;
-                readonly scaleBarHeight: number;
-                readonly headerHeight: number;
-                readonly trackHeights: number;
-                readonly trackHeightsWithResizeHandles: number;
-                readonly height: number;
-                readonly totalBp: number;
-                readonly maxBpPerPx: number;
-                readonly minBpPerPx: number;
-                readonly error: {};
-                readonly maxOffset: number;
-                readonly minOffset: number;
-                readonly displayedRegionsTotalPx: number;
-                renderProps(): any;
-                searchScope(assemblyName: string): {
-                    assemblyName: string;
-                    includeAggregateIndexes: boolean;
-                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                };
-                getTrack(id: string): any;
-                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-            } & {
-                setColorByCDS(flag: boolean): void;
-                setShowCytobands(flag: boolean): void;
-                setWidth(newWidth: number): void;
-                setError(error: unknown): void;
-                setHideHeader(b: boolean): void;
-                setHideHeaderOverview(b: boolean): void;
-                setHideNoTracksActive(b: boolean): void;
-                setShowGridlines(b: boolean): void;
-                addToHighlights(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>[] | undefined): void;
-                removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-                setOffsets(left?: import("./LinearGenomeView").BpOffset, right?: import("./LinearGenomeView").BpOffset): void;
-                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
-                setNewView(bpPerPx: number, offsetPx: number): void;
-                horizontallyFlip(): void;
-                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-                hideTrack(trackId: string): number;
-            } & {
-                moveTrackDown(id: string): void;
-                moveTrackUp(id: string): void;
-                moveTrackToTop(id: string): void;
-                moveTrackToBottom(id: string): void;
-                moveTrack(movingId: string, targetId: string): void;
-                closeView(): void;
-                toggleTrack(trackId: string): boolean;
-                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
-                setShowCenterLine(b: boolean): void;
-                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                activateTrackSelector(): import("@jbrowse/core/util").Widget;
-                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset, rightOffset?: import("./LinearGenomeView").BpOffset): {
-                    start: number;
-                    end: number;
-                    type: string;
-                    regionNumber?: number;
-                    reversed?: boolean;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string;
-                    isLeftEndOfDisplayedRegion?: boolean;
-                }[];
-                afterDisplayedRegionsSet(cb: Function): void;
-                horizontalScroll(distance: number): number;
-                center(): void;
-                showAllRegions(): void;
-                showAllRegionsInAssembly(assemblyName?: string): void;
-                setDraggingTrackId(idx?: string): void;
-                setScaleFactor(factor: number): void;
-                clearView(): void;
-                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
-            } & {
-                slide: (viewWidths: number) => void;
-            } & {
-                zoom: (targetBpPerPx: number) => void;
-            } & {
-                readonly canShowCytobands: boolean;
-                readonly showCytobands: boolean;
-                readonly anyCytobandsExist: boolean;
-                readonly cytobandOffset: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                readonly visibleLocStrings: string;
-                readonly coarseVisibleLocStrings: string;
-            } & {
-                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-                afterAttach(): void;
-            } & {
-                moveTo(start?: import("./LinearGenomeView").BpOffset, end?: import("./LinearGenomeView").BpOffset): void;
-                navToLocString(input: string, optAssemblyName?: string): Promise<void>;
-                navToSearchString({ input, assembly, }: {
-                    input: string;
-                    assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
-                }): Promise<void>;
-                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
-                navTo(query: import("./LinearGenomeView").NavLocation): void;
-                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
-            } & {
-                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                bpToPx({ refName, coord, regionNumber, }: {
-                    refName: string;
-                    coord: number;
-                    regionNumber?: number;
-                }): {
-                    index: number;
-                    offsetPx: number;
-                } | undefined;
-                centerAt(coord: number, refName: string, regionNumber?: number): void;
-                pxToBp(px: number): {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean;
-                };
-                readonly centerLineInfo: {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean;
-                } | undefined;
-            } & {
-                afterCreate(): void;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            } & {
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").IType<string | undefined, string, string>;
-                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-                colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-            }, {
-                width: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                setDisplayName(name: string): void;
-                setWidth(newWidth: number): void;
-                setMinimized(flag: boolean): void;
-            } & {
-                volatileWidth: number | undefined;
-                minimumBlockWidth: number;
-                draggingTrackId: undefined | string;
-                volatileError: unknown;
-                afterDisplayedRegionsSetCallbacks: Function[];
-                scaleFactor: number;
-                trackRefs: Record<string, HTMLDivElement>;
-                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                coarseTotalBp: number;
-                leftOffset: undefined | import("./LinearGenomeView").BpOffset;
-                rightOffset: undefined | import("./LinearGenomeView").BpOffset;
-            } & {
-                scaleBarDisplayPrefix(): "";
-                readonly trackLabelsSetting: any;
-                readonly width: number;
-                readonly interRegionPaddingWidth: number;
-                readonly assemblyNames: string[];
-            } & {
-                MiniControlsComponent(): import("react").FC<any>;
-                HeaderComponent(): import("react").FC<any>;
-                readonly assemblyErrors: string;
-                readonly assembliesInitialized: boolean;
-                readonly initialized: boolean;
-                readonly hasDisplayedRegions: boolean;
-                readonly scaleBarHeight: number;
-                readonly headerHeight: number;
-                readonly trackHeights: number;
-                readonly trackHeightsWithResizeHandles: number;
-                readonly height: number;
-                readonly totalBp: number;
-                readonly maxBpPerPx: number;
-                readonly minBpPerPx: number;
-                readonly error: {};
-                readonly maxOffset: number;
-                readonly minOffset: number;
-                readonly displayedRegionsTotalPx: number;
-                renderProps(): any;
-                searchScope(assemblyName: string): {
-                    assemblyName: string;
-                    includeAggregateIndexes: boolean;
-                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                };
-                getTrack(id: string): any;
-                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-            } & {
-                setColorByCDS(flag: boolean): void;
-                setShowCytobands(flag: boolean): void;
-                setWidth(newWidth: number): void;
-                setError(error: unknown): void;
-                setHideHeader(b: boolean): void;
-                setHideHeaderOverview(b: boolean): void;
-                setHideNoTracksActive(b: boolean): void;
-                setShowGridlines(b: boolean): void;
-                addToHighlights(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>[] | undefined): void;
-                removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-                setOffsets(left?: import("./LinearGenomeView").BpOffset, right?: import("./LinearGenomeView").BpOffset): void;
-                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
-                setNewView(bpPerPx: number, offsetPx: number): void;
-                horizontallyFlip(): void;
-                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-                hideTrack(trackId: string): number;
-            } & {
-                moveTrackDown(id: string): void;
-                moveTrackUp(id: string): void;
-                moveTrackToTop(id: string): void;
-                moveTrackToBottom(id: string): void;
-                moveTrack(movingId: string, targetId: string): void;
-                closeView(): void;
-                toggleTrack(trackId: string): boolean;
-                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
-                setShowCenterLine(b: boolean): void;
-                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                activateTrackSelector(): import("@jbrowse/core/util").Widget;
-                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset, rightOffset?: import("./LinearGenomeView").BpOffset): {
-                    start: number;
-                    end: number;
-                    type: string;
-                    regionNumber?: number;
-                    reversed?: boolean;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string;
-                    isLeftEndOfDisplayedRegion?: boolean;
-                }[];
-                afterDisplayedRegionsSet(cb: Function): void;
-                horizontalScroll(distance: number): number;
-                center(): void;
-                showAllRegions(): void;
-                showAllRegionsInAssembly(assemblyName?: string): void;
-                setDraggingTrackId(idx?: string): void;
-                setScaleFactor(factor: number): void;
-                clearView(): void;
-                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
-            } & {
-                slide: (viewWidths: number) => void;
-            } & {
-                zoom: (targetBpPerPx: number) => void;
-            } & {
-                readonly canShowCytobands: boolean;
-                readonly showCytobands: boolean;
-                readonly anyCytobandsExist: boolean;
-                readonly cytobandOffset: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                readonly visibleLocStrings: string;
-                readonly coarseVisibleLocStrings: string;
-            } & {
-                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-                afterAttach(): void;
-            } & {
-                moveTo(start?: import("./LinearGenomeView").BpOffset, end?: import("./LinearGenomeView").BpOffset): void;
-                navToLocString(input: string, optAssemblyName?: string): Promise<void>;
-                navToSearchString({ input, assembly, }: {
-                    input: string;
-                    assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
-                }): Promise<void>;
-                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
-                navTo(query: import("./LinearGenomeView").NavLocation): void;
-                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
-            } & {
-                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                bpToPx({ refName, coord, regionNumber, }: {
-                    refName: string;
-                    coord: number;
-                    regionNumber?: number;
-                }): {
-                    index: number;
-                    offsetPx: number;
-                } | undefined;
-                centerAt(coord: number, refName: string, regionNumber?: number): void;
-                pxToBp(px: number): {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean;
-                };
-                readonly centerLineInfo: {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean;
-                } | undefined;
-            } & {
-                afterCreate(): void;
-            }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            } & {
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").IType<string | undefined, string, string>;
-                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-                colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-            }>>, import("mobx-state-tree")._NotCustomized>>;
+        LinearGenomeView: ({ model, }: {
+            model: import("./LinearGenomeView").LinearGenomeViewModel;
         }) => import("react").JSX.Element;
     };
     /**

package/esm/searchUtils.js

@@ -17,7 +17,7 @@ export async function navToOption({ option, model, assemblyName, }) {
 // 2) if it's a single result navigate to it
 // 3) else assume it's a locstring and navigate to it
 export async function handleSelectedRegion({ input, model, assembly, }) {
-    const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
+    const allRefs = assembly.allRefNamesWithLowerCase || [];
     const assemblyName = assembly.name;
     if (input.split(' ').every(entry => checkRef(entry, allRefs))) {
         await model.navToLocString(input, assembly.name);
@@ -71,9 +71,7 @@ export function splitLast(str, split) {
     if (lastIndex === -1) {
         return [str, ''];
     }
-    else {
-        const before = str.slice(0, lastIndex);
-        const after = str.slice(lastIndex + 1);
-        return [before, after];
-    }
+    const before = str.slice(0, lastIndex);
+    const after = str.slice(lastIndex + 1);
+    return [before, after];
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "2.13.0",
+  "version": "2.14.0",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -30,7 +30,7 @@
     "build:esm": "tsc --build tsconfig.build.esm.json",
     "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
     "clean": "rimraf dist esm *.tsbuildinfo",
-    "test": "cd ../..; jest plugins/linear-genome-view",
+    "test": "cd ../..; jest --passWithNoTests plugins/linear-genome-view",
     "prepublishOnly": "yarn test",
     "prepack": "yarn build && yarn useDist",
     "postpack": "yarn useSrc",
@@ -61,5 +61,5 @@
     "access": "public"
   },
   "module": "esm/index.js",
-  "gitHead": "efe02fb9616e20e929cceeed46eb96420c1b6923"
+  "gitHead": "9fb8231d932db40adf0a283081765431756c66ff"
 }