@jbrowse/plugin-linear-genome-view 2.11.1 → 2.12.0

package/esm/LinearGenomeView/components/hooks.js

@@ -1,5 +1,4 @@
 import { useRef, useEffect, useState } from 'react';
-import normalizeWheel from 'normalize-wheel';
 import { getRelativeX } from './util';
 export function useSideScroll(model) {
     const [mouseDragging, setMouseDragging] = useState(false);
@@ -206,11 +205,10 @@ export function useWheelScroll(ref, model) {
         const curr = ref.current;
         // if ctrl is held down, zoom in with y-scroll
         // else scroll horizontally with x-scroll
-        function onWheel(origEvent) {
-            const event = normalizeWheel(origEvent);
-            if (origEvent.ctrlKey === true) {
-                origEvent.preventDefault();
-                delta.current += event.pixelY / 500;
+        function onWheel(event) {
+            if (event.ctrlKey === true) {
+                event.preventDefault();
+                delta.current += event.deltaY / 500;
                 model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
                 if (timeout.current) {
                     clearTimeout(timeout.current);
@@ -219,7 +217,7 @@ export function useWheelScroll(ref, model) {
                     model.setScaleFactor(1);
                     model.zoomTo(delta.current > 0
                         ? model.bpPerPx * (1 + delta.current)
-                        : model.bpPerPx / (1 - delta.current), origEvent.clientX - ((curr === null || curr === void 0 ? void 0 : curr.getBoundingClientRect().left) || 0));
+                        : model.bpPerPx / (1 - delta.current), event.clientX - ((curr === null || curr === void 0 ? void 0 : curr.getBoundingClientRect().left) || 0));
                     delta.current = 0;
                 }, 300);
             }
@@ -227,10 +225,10 @@ export function useWheelScroll(ref, model) {
                 // this is needed to stop the event from triggering "back button
                 // action" on MacOSX etc.  but is a heuristic to avoid preventing the
                 // inner-track scroll behavior
-                if (Math.abs(event.pixelX) > Math.abs(2 * event.pixelY)) {
-                    origEvent.preventDefault();
+                if (Math.abs(event.deltaX) > Math.abs(2 * event.deltaY)) {
+                    event.preventDefault();
                 }
-                delta.current += event.pixelX;
+                delta.current += event.deltaX;
                 if (!scheduled.current) {
                     // use rAF to make it so multiple event handlers aren't fired per-frame
                     // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/

package/esm/LinearGenomeView/model.d.ts

@@ -62,16 +62,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     type: import("mobx-state-tree").IType<string | undefined, string, string>;
     offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-    displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        refName: import("mobx-state-tree").ISimpleType<string>;
-        start: import("mobx-state-tree").ISimpleType<number>;
-        end: import("mobx-state-tree").ISimpleType<number>;
-        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    } & {
-        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        setRefName(newRefName: string): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Region[], Region[], Region[]>, [undefined]>;
     tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
     hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -364,6 +355,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     getSelectedRegions(leftOffset?: BpOffset, rightOffset?: BpOffset): {
         start: number;
         end: number;
+        type: string;
         regionNumber?: number | undefined;
         reversed?: boolean | undefined;
         refName: string;
@@ -584,7 +576,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         offset: number;
         start: number;
         end: number;
-        reversed: boolean;
+        reversed?: boolean | undefined;
     };
     /**
      * #getter
@@ -598,7 +590,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         offset: number;
         start: number;
         end: number;
-        reversed: boolean;
+        reversed?: boolean | undefined;
     } | undefined;
 } & {
     afterCreate(): void;
@@ -611,16 +603,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     type: import("mobx-state-tree").IType<string | undefined, string, string>;
     offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-    displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        refName: import("mobx-state-tree").ISimpleType<string>;
-        start: import("mobx-state-tree").ISimpleType<number>;
-        end: import("mobx-state-tree").ISimpleType<number>;
-        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    } & {
-        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        setRefName(newRefName: string): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Region[], Region[], Region[]>, [undefined]>;
     tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
     hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;

package/esm/LinearGenomeView/model.js

@@ -1,7 +1,7 @@
 import { lazy } from 'react';
 import { getConf } from '@jbrowse/core/configuration';
 import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes/models';
-import { ElementId, Region as MUIRegion } from '@jbrowse/core/util/types/mst';
+import { ElementId } from '@jbrowse/core/util/types/mst';
 import { assembleLocString, clamp, findLast, getContainingView, getSession, isViewContainer, isSessionModelWithWidgets, isSessionWithAddTracks, localStorageGetItem, localStorageSetItem, measureText, springAnimate, sum, } from '@jbrowse/core/util';
 import calculateDynamicBlocks from '@jbrowse/core/util/calculateDynamicBlocks';
 import calculateStaticBlocks from '@jbrowse/core/util/calculateStaticBlocks';
@@ -91,7 +91,7 @@ export function stateModelFactory(pluginManager) {
          * advised to use the entire set of chromosomes if your assembly is very
          * fragmented
          */
-        displayedRegions: types.array(MUIRegion),
+        displayedRegions: types.optional(types.frozen(), []),
         /**
          * #property
          * array of currently displayed tracks state models instances
@@ -288,7 +288,7 @@ export function stateModelFactory(pluginManager) {
          * #getter
          */
         get totalBp() {
-            return self.displayedRegions.reduce((a, b) => a + b.end - b.start, 0);
+            return sum(self.displayedRegions.map(r => r.end - r.start));
         },
         /**
          * #getter

package/esm/index.d.ts

@@ -143,6 +143,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
                 rendererTypeName: string;
@@ -258,6 +263,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
                 setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
@@ -355,6 +361,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             }, {
                 rendererTypeName: string;
@@ -470,6 +481,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
                 setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
@@ -567,6 +579,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             }>>, {
                 type: string;
@@ -664,6 +681,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     defaultValue: string;
                     contextVariable: string[];
                 };
+                jexlFilters: {
+                    type: string;
+                    description: string;
+                    defaultValue: never[];
+                };
             }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
         }, {
             rendererTypeName: string;
@@ -779,6 +801,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
             deleteBlock(key: string): void;
             selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+            navToFeature(feature: import("@jbrowse/core/util").Feature): void;
             clearFeatureSelection(): void;
             setFeatureIdUnderMouse(feature?: string | undefined): void;
             setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
@@ -876,6 +899,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     defaultValue: string;
                     contextVariable: string[];
                 };
+                jexlFilters: {
+                    type: string;
+                    description: string;
+                    defaultValue: never[];
+                };
             }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
         }>>, {
             type: string;
@@ -908,6 +936,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 defaultValue: string;
                 contextVariable: string[];
             };
+            jexlFilters: {
+                type: string;
+                description: string;
+                defaultValue: never[];
+            };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
         SearchBox: ({ model, showHelp, }: {
             showHelp?: boolean | undefined;
@@ -918,25 +951,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: string;
                 offsetPx: number;
                 bpPerPx: number;
-                displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+                displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
                 tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
                 hideHeader: boolean;
                 hideHeaderOverview: boolean;
@@ -1039,6 +1054,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
                     start: number;
                     end: number;
+                    type: string;
                     regionNumber?: number | undefined;
                     reversed?: boolean | undefined;
                     refName: string;
@@ -1232,7 +1248,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 };
                 readonly centerLineInfo: {
                     coord: number;
@@ -1243,7 +1259,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 } | undefined;
             } & {
                 afterCreate(): void;
@@ -1256,16 +1272,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: import("mobx-state-tree").IType<string | undefined, string, string>;
                 offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
                 bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
                 tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
                 hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
                 hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -1368,6 +1375,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
                     start: number;
                     end: number;
+                    type: string;
                     regionNumber?: number | undefined;
                     reversed?: boolean | undefined;
                     refName: string;
@@ -1561,7 +1569,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 };
                 readonly centerLineInfo: {
                     coord: number;
@@ -1572,7 +1580,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 } | undefined;
             } & {
                 afterCreate(): void;
@@ -1585,16 +1593,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: import("mobx-state-tree").IType<string | undefined, string, string>;
                 offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
                 bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
                 tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
                 hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
                 hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -1616,25 +1615,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: string;
                 offsetPx: number;
                 bpPerPx: number;
-                displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+                displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
                 tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
                 hideHeader: boolean;
                 hideHeaderOverview: boolean;
@@ -1737,6 +1718,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
                     start: number;
                     end: number;
+                    type: string;
                     regionNumber?: number | undefined;
                     reversed?: boolean | undefined;
                     refName: string;
@@ -1930,7 +1912,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 };
                 readonly centerLineInfo: {
                     coord: number;
@@ -1941,7 +1923,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 } | undefined;
             } & {
                 afterCreate(): void;
@@ -1954,16 +1936,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: import("mobx-state-tree").IType<string | undefined, string, string>;
                 offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
                 bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
                 tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
                 hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
                 hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -2066,6 +2039,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
                     start: number;
                     end: number;
+                    type: string;
                     regionNumber?: number | undefined;
                     reversed?: boolean | undefined;
                     refName: string;
@@ -2259,7 +2233,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 };
                 readonly centerLineInfo: {
                     coord: number;
@@ -2270,7 +2244,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 } | undefined;
             } & {
                 afterCreate(): void;
@@ -2283,16 +2257,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: import("mobx-state-tree").IType<string | undefined, string, string>;
                 offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
                 bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
                 tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
                 hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
                 hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -2314,25 +2279,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: string;
                 offsetPx: number;
                 bpPerPx: number;
-                displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+                displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
                 tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
                 hideHeader: boolean;
                 hideHeaderOverview: boolean;
@@ -2435,6 +2382,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
                     start: number;
                     end: number;
+                    type: string;
                     regionNumber?: number | undefined;
                     reversed?: boolean | undefined;
                     refName: string;
@@ -2628,7 +2576,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 };
                 readonly centerLineInfo: {
                     coord: number;
@@ -2639,7 +2587,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 } | undefined;
             } & {
                 afterCreate(): void;
@@ -2652,16 +2600,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: import("mobx-state-tree").IType<string | undefined, string, string>;
                 offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
                 bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
                 tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
                 hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
                 hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -2764,6 +2703,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
                     start: number;
                     end: number;
+                    type: string;
                     regionNumber?: number | undefined;
                     reversed?: boolean | undefined;
                     refName: string;
@@ -2957,7 +2897,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 };
                 readonly centerLineInfo: {
                     coord: number;
@@ -2968,7 +2908,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed: boolean;
+                    reversed?: boolean | undefined;
                 } | undefined;
             } & {
                 afterCreate(): void;
@@ -2981,16 +2921,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 type: import("mobx-state-tree").IType<string | undefined, string, string>;
                 offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
                 bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                    refName: import("mobx-state-tree").ISimpleType<string>;
-                    start: import("mobx-state-tree").ISimpleType<number>;
-                    end: import("mobx-state-tree").ISimpleType<number>;
-                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                } & {
-                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                }, {
-                    setRefName(newRefName: string): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
                 tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
                 hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
                 hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "2.11.1",
+  "version": "2.12.0",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -41,12 +41,10 @@
     "@floating-ui/react": "^0.26.3",
     "@mui/icons-material": "^5.0.1",
     "@types/file-saver": "^2.0.1",
-    "@types/normalize-wheel": "^1.0.0",
     "clone": "^2.1.2",
     "copy-to-clipboard": "^3.3.1",
     "file-saver": "^2.0.0",
     "material-ui-popup-state": "^5.0.0",
-    "normalize-wheel": "^1.0.1",
     "react-error-boundary": "^4.0.3"
   },
   "peerDependencies": {
@@ -63,5 +61,5 @@
     "access": "public"
   },
   "module": "esm/index.js",
-  "gitHead": "11b28d66d782eb06f92ccb993108bb6c3c82819e"
+  "gitHead": "935f2602d29abc737bb1f493a922b6218d023ae2"
 }