@jbrowse/plugin-linear-genome-view 2.10.1 → 2.10.2

package/dist/BaseLinearDisplay/models/util.js

@@ -20,8 +20,10 @@ function getDisplayStr(totalBytes) {
 exports.getDisplayStr = getDisplayStr;
 // stabilize clipid under test for snapshot
 function getId(id, index) {
-    const isJest = typeof jest === 'undefined';
-    return `clip-${isJest ? id : 'jest'}-${index}`;
+    const notJest = typeof jest === 'undefined';
+    return ['clip', notJest ? id : 'jest', index, notJest ? Math.random() : '']
+        .filter(f => !!f)
+        .join('-');
 }
 exports.getId = getId;
 async function getFeatureDensityStatsPre(self) {

package/dist/LaunchLinearGenomeView/index.js

@@ -1,11 +1,11 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 const util_1 = require("@jbrowse/core/util");
-const searchUtils_1 = require("..//searchUtils");
+const searchUtils_1 = require("../searchUtils");
 exports.default = (pluginManager) => {
     pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView', 
     // @ts-expect-error
-    async ({ session, assembly, loc, tracks = [], }) => {
+    async ({ session, assembly, loc, tracks = [], tracklist, nav, }) => {
         try {
             const { assemblyManager } = session;
             const view = session.addView('LinearGenomeView', {});
@@ -23,6 +23,12 @@ exports.default = (pluginManager) => {
             if (idsNotFound.length) {
                 throw new Error(`Could not resolve identifiers: ${idsNotFound.join(',')}`);
             }
+            if (tracklist) {
+                view.activateTrackSelector();
+            }
+            if (nav !== undefined) {
+                view.setHideHeader(!nav);
+            }
         }
         catch (e) {
             session.notify(`${e}`, 'error');

package/dist/LinearBasicDisplay/model.d.ts

@@ -37,9 +37,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined; /**
-         * #property
-         */
+        renderInProgress: AbortController | undefined;
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
@@ -159,12 +157,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         }, {
             rendererTypeName: string;
             error: unknown;
-            message: string | undefined;
+            message: string | undefined; /**
+             * #action
+             */
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
-    /**
-     * #action
-     */
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
@@ -193,9 +190,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
 } & {
     readonly currentBytesRequested: number;
     readonly currentFeatureScreenDensity: number;
-    /**
-     * #getter
-     */
     readonly maxFeatureScreenDensity: any;
     readonly featureDensityStatsReady: boolean;
     readonly maxAllowableBytes: number;
@@ -205,7 +199,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     setCurrStatsBpPerPx(n: number): void;
     setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
     getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    setFeatureDensityStatsP(arg: any): void;
+    setFeatureDensityStatsP(arg: any): void; /**
+     * #method
+     */
     setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
     clearFeatureDensityStats(): void;
 } & {
@@ -275,9 +271,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any; /**
-         * #property
-         */
+        setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
 } & {
     /**
@@ -304,9 +298,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         config: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any; /**
-             * #property
-             */
+            setSubschema(slotName: string, data: unknown): any;
         } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
     };
     /**
@@ -341,9 +333,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined; /**
-         * #property
-         */
+        renderInProgress: AbortController | undefined;
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;

package/dist/LinearBasicDisplay/model.js

@@ -34,7 +34,7 @@ const mobx_state_tree_1 = require("mobx-state-tree");
 const Visibility_1 = __importDefault(require("@mui/icons-material/Visibility"));
 // locals
 const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
-const SetMaxHeightDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetMaxHeight'))));
+const SetMaxHeightDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetMaxHeight'))));
 /**
  * #stateModel LinearBasicDisplay
  * #category display
@@ -202,7 +202,7 @@ function stateModelFactory(configSchema) {
                         label: 'Set max height',
                         onClick: () => {
                             (0, util_1.getSession)(self).queueDialog(handleClose => [
-                                SetMaxHeightDlg,
+                                SetMaxHeightDialog,
                                 { model: self, handleClose },
                             ]);
                         },

package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { ExportSvgOptions } from '..';
-export default function ExportSvgDlg({ model, handleClose, }: {
+export default function ExportSvgDialog({ model, handleClose, }: {
     model: {
         exportSvg(opts: ExportSvgOptions): Promise<void>;
     };

package/dist/LinearGenomeView/components/ExportSvgDialog.js

@@ -35,7 +35,7 @@ function LoadingMessage() {
 function useSvgLocal(key, val) {
     return (0, util_1.useLocalStorage)('svg-' + key, val);
 }
-function ExportSvgDlg({ model, handleClose, }) {
+function ExportSvgDialog({ model, handleClose, }) {
     const session = (0, util_1.getSession)(model);
     const offscreenCanvas = typeof OffscreenCanvas !== 'undefined';
     const [rasterizeLayers, setRasterizeLayers] = (0, react_1.useState)(offscreenCanvas);
@@ -80,4 +80,4 @@ function ExportSvgDlg({ model, handleClose, }) {
                     }
                 } }, "Submit"))));
 }
-exports.default = ExportSvgDlg;
+exports.default = ExportSvgDialog;

package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js

@@ -38,7 +38,7 @@ function HelpAdornment() {
     return (react_1.default.createElement(react_1.default.Fragment, null,
         react_1.default.createElement(material_1.IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
             react_1.default.createElement(Help_1.default, { fontSize: "small" })),
-        isHelpDialogDisplayed ? (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null) },
+        isHelpDialogDisplayed ? (react_1.default.createElement(react_1.Suspense, { fallback: null },
             react_1.default.createElement(HelpDialog, { handleClose: () => setHelpDialogDisplayed(false) }))) : null));
 }
 function EndAdornment({ showHelp, endAdornment, }) {

package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js

@@ -34,7 +34,6 @@ const material_1 = require("@mui/material");
 const util_2 = require("./util");
 const AutocompleteTextField_1 = __importDefault(require("./AutocompleteTextField"));
 const RefNameAutocomplete = (0, mobx_react_1.observer)(function ({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, maxWidth = 550, TextFieldProps = {}, }) {
-    var _a;
     const session = (0, util_1.getSession)(model);
     const { assemblyManager } = session;
     const [open, setOpen] = (0, react_1.useState)(false);
@@ -73,6 +72,14 @@ const RefNameAutocomplete = (0, mobx_react_1.observer)(function ({ model, onSele
     const inputBoxVal = coarseVisibleLocStrings || value || '';
     // heuristic, text width + 60 accommodates help icon and search icon
     const width = Math.min(Math.max((0, util_1.measureText)(inputBoxVal, 14) + 100, minWidth), maxWidth);
+    const regions = assembly === null || assembly === void 0 ? void 0 : assembly.regions;
+    const regionOptions = (0, react_1.useMemo)(() => (regions === null || regions === void 0 ? void 0 : regions.map(option => ({
+        result: new BaseResults_1.RefSequenceResult({
+            refName: option.refName,
+            label: option.refName,
+            matchedAttribute: 'refName',
+        }),
+    }))) || [], [regions]);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked
     return (react_1.default.createElement(react_1.default.Fragment, null,
@@ -98,14 +105,6 @@ const RefNameAutocomplete = (0, mobx_react_1.observer)(function ({ model, onSele
                     onSelect === null || onSelect === void 0 ? void 0 : onSelect(selectedOption.result);
                 }
                 setInputValue(inputBoxVal);
-            }, options: !(searchOptions === null || searchOptions === void 0 ? void 0 : searchOptions.length)
-                ? ((_a = assembly === null || assembly === void 0 ? void 0 : assembly.regions) === null || _a === void 0 ? void 0 : _a.map(option => ({
-                    result: new BaseResults_1.RefSequenceResult({
-                        refName: option.refName,
-                        label: option.refName,
-                        matchedAttribute: 'refName',
-                    }),
-                }))) || []
-                : searchOptions, getOptionDisabled: option => option.group === 'limitOption', filterOptions: (opts, { inputValue }) => (0, util_2.getFiltered)(opts, inputValue), renderInput: params => (react_1.default.createElement(AutocompleteTextField_1.default, { showHelp: showHelp, params: params, inputBoxVal: inputBoxVal, TextFieldProps: TextFieldProps, setCurrentSearch: setCurrentSearch, setInputValue: setInputValue })), getOptionLabel: opt => typeof opt === 'string' ? opt : opt.result.getDisplayString() })));
+            }, options: (searchOptions === null || searchOptions === void 0 ? void 0 : searchOptions.length) ? searchOptions : regionOptions, getOptionDisabled: option => option.group === 'limitOption', filterOptions: (opts, { inputValue }) => (0, util_2.getFiltered)(opts, inputValue), renderInput: params => (react_1.default.createElement(AutocompleteTextField_1.default, { showHelp: showHelp, params: params, inputBoxVal: inputBoxVal, TextFieldProps: TextFieldProps, setCurrentSearch: setCurrentSearch, setInputValue: setInputValue })), getOptionLabel: opt => typeof opt === 'string' ? opt : opt.result.getDisplayString() })));
 });
 exports.default = RefNameAutocomplete;

package/dist/LinearGenomeView/model.d.ts

@@ -238,19 +238,19 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     /**
      * #action
      */
-    toggleHeader(): void;
+    setHideHeader(b: boolean): void;
     /**
      * #action
      */
-    toggleHeaderOverview(): void;
+    setHideHeaderOverview(b: boolean): void;
     /**
      * #action
      */
-    toggleNoTracksActive(): void;
+    setHideNoTracksActive(b: boolean): void;
     /**
      * #action
      */
-    toggleShowGridlines(): void;
+    setShowGridlines(b: boolean): void;
     /**
      * #action
      */
@@ -306,7 +306,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     /**
      * #action
      */
-    toggleCenterLine(): void;
+    setShowCenterLine(b: boolean): void;
     /**
      * #action
      */

package/dist/LinearGenomeView/model.js

@@ -447,26 +447,26 @@ function stateModelFactory(pluginManager) {
         /**
          * #action
          */
-        toggleHeader() {
-            self.hideHeader = !self.hideHeader;
+        setHideHeader(b) {
+            self.hideHeader = b;
         },
         /**
          * #action
          */
-        toggleHeaderOverview() {
-            self.hideHeaderOverview = !self.hideHeaderOverview;
+        setHideHeaderOverview(b) {
+            self.hideHeaderOverview = b;
         },
         /**
          * #action
          */
-        toggleNoTracksActive() {
-            self.hideNoTracksActive = !self.hideNoTracksActive;
+        setHideNoTracksActive(b) {
+            self.hideNoTracksActive = b;
         },
         /**
          * #action
          */
-        toggleShowGridlines() {
-            self.showGridlines = !self.showGridlines;
+        setShowGridlines(b) {
+            self.showGridlines = b;
         },
         /**
          * #action
@@ -642,8 +642,8 @@ function stateModelFactory(pluginManager) {
         /**
          * #action
          */
-        toggleCenterLine() {
-            self.showCenterLine = !self.showCenterLine;
+        setShowCenterLine(b) {
+            self.showCenterLine = b;
         },
         /**
          * #action
@@ -920,32 +920,32 @@ function stateModelFactory(pluginManager) {
                             label: 'Show center line',
                             type: 'checkbox',
                             checked: self.showCenterLine,
-                            onClick: self.toggleCenterLine,
+                            onClick: () => self.setShowCenterLine(!self.showCenterLine),
                         },
                         {
                             label: 'Show header',
                             type: 'checkbox',
                             checked: !self.hideHeader,
-                            onClick: self.toggleHeader,
+                            onClick: () => self.setHideHeader(!self.hideHeader),
                         },
                         {
                             label: 'Show header overview',
                             type: 'checkbox',
                             checked: !self.hideHeaderOverview,
-                            onClick: self.toggleHeaderOverview,
+                            onClick: () => self.setHideHeaderOverview(!self.hideHeaderOverview),
                             disabled: self.hideHeader,
                         },
                         {
                             label: 'Show no tracks active button',
                             type: 'checkbox',
                             checked: !self.hideNoTracksActive,
-                            onClick: self.toggleNoTracksActive,
+                            onClick: () => self.setHideNoTracksActive(!self.hideNoTracksActive),
                         },
                         {
                             label: 'Show guidelines',
                             type: 'checkbox',
                             checked: self.showGridlines,
-                            onClick: self.toggleShowGridlines,
+                            onClick: () => self.setShowGridlines(!self.showGridlines),
                         },
                         ...(canShowCytobands
                             ? [

package/dist/index.d.ts

@@ -964,10 +964,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -981,7 +981,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -1283,10 +1283,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -1300,7 +1300,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -1612,10 +1612,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -1629,7 +1629,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -1931,10 +1931,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -1948,7 +1948,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -2260,10 +2260,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -2277,7 +2277,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -2579,10 +2579,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -2596,7 +2596,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {

package/esm/BaseLinearDisplay/models/util.js

@@ -16,8 +16,10 @@ export function getDisplayStr(totalBytes) {
 }
 // stabilize clipid under test for snapshot
 export function getId(id, index) {
-    const isJest = typeof jest === 'undefined';
-    return `clip-${isJest ? id : 'jest'}-${index}`;
+    const notJest = typeof jest === 'undefined';
+    return ['clip', notJest ? id : 'jest', index, notJest ? Math.random() : '']
+        .filter(f => !!f)
+        .join('-');
 }
 export async function getFeatureDensityStatsPre(self) {
     const view = getContainingView(self);

package/esm/LaunchLinearGenomeView/index.js

@@ -1,9 +1,9 @@
 import { when } from '@jbrowse/core/util';
-import { handleSelectedRegion } from '..//searchUtils';
+import { handleSelectedRegion } from '../searchUtils';
 export default (pluginManager) => {
     pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView', 
     // @ts-expect-error
-    async ({ session, assembly, loc, tracks = [], }) => {
+    async ({ session, assembly, loc, tracks = [], tracklist, nav, }) => {
         try {
             const { assemblyManager } = session;
             const view = session.addView('LinearGenomeView', {});
@@ -21,6 +21,12 @@ export default (pluginManager) => {
             if (idsNotFound.length) {
                 throw new Error(`Could not resolve identifiers: ${idsNotFound.join(',')}`);
             }
+            if (tracklist) {
+                view.activateTrackSelector();
+            }
+            if (nav !== undefined) {
+                view.setHideHeader(!nav);
+            }
         }
         catch (e) {
             session.notify(`${e}`, 'error');

package/esm/LinearBasicDisplay/model.d.ts

@@ -37,9 +37,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined; /**
-         * #property
-         */
+        renderInProgress: AbortController | undefined;
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
@@ -159,12 +157,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         }, {
             rendererTypeName: string;
             error: unknown;
-            message: string | undefined;
+            message: string | undefined; /**
+             * #action
+             */
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
-    /**
-     * #action
-     */
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
@@ -193,9 +190,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
 } & {
     readonly currentBytesRequested: number;
     readonly currentFeatureScreenDensity: number;
-    /**
-     * #getter
-     */
     readonly maxFeatureScreenDensity: any;
     readonly featureDensityStatsReady: boolean;
     readonly maxAllowableBytes: number;
@@ -205,7 +199,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     setCurrStatsBpPerPx(n: number): void;
     setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
     getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    setFeatureDensityStatsP(arg: any): void;
+    setFeatureDensityStatsP(arg: any): void; /**
+     * #method
+     */
     setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
     clearFeatureDensityStats(): void;
 } & {
@@ -275,9 +271,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any; /**
-         * #property
-         */
+        setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
 } & {
     /**
@@ -304,9 +298,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         config: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any; /**
-             * #property
-             */
+            setSubschema(slotName: string, data: unknown): any;
         } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
     };
     /**
@@ -341,9 +333,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined; /**
-         * #property
-         */
+        renderInProgress: AbortController | undefined;
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;

package/esm/LinearBasicDisplay/model.js

@@ -6,7 +6,7 @@ import { types, getEnv } from 'mobx-state-tree';
 import VisibilityIcon from '@mui/icons-material/Visibility';
 // locals
 import { BaseLinearDisplay } from '../BaseLinearDisplay';
-const SetMaxHeightDlg = lazy(() => import('./components/SetMaxHeight'));
+const SetMaxHeightDialog = lazy(() => import('./components/SetMaxHeight'));
 /**
  * #stateModel LinearBasicDisplay
  * #category display
@@ -174,7 +174,7 @@ function stateModelFactory(configSchema) {
                         label: 'Set max height',
                         onClick: () => {
                             getSession(self).queueDialog(handleClose => [
-                                SetMaxHeightDlg,
+                                SetMaxHeightDialog,
                                 { model: self, handleClose },
                             ]);
                         },

package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { ExportSvgOptions } from '..';
-export default function ExportSvgDlg({ model, handleClose, }: {
+export default function ExportSvgDialog({ model, handleClose, }: {
     model: {
         exportSvg(opts: ExportSvgOptions): Promise<void>;
     };

package/esm/LinearGenomeView/components/ExportSvgDialog.js

@@ -10,7 +10,7 @@ function LoadingMessage() {
 function useSvgLocal(key, val) {
     return useLocalStorage('svg-' + key, val);
 }
-export default function ExportSvgDlg({ model, handleClose, }) {
+export default function ExportSvgDialog({ model, handleClose, }) {
     const session = getSession(model);
     const offscreenCanvas = typeof OffscreenCanvas !== 'undefined';
     const [rasterizeLayers, setRasterizeLayers] = useState(offscreenCanvas);

package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js

@@ -10,7 +10,7 @@ function HelpAdornment() {
     return (React.createElement(React.Fragment, null,
         React.createElement(IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
             React.createElement(HelpIcon, { fontSize: "small" })),
-        isHelpDialogDisplayed ? (React.createElement(Suspense, { fallback: React.createElement("div", null) },
+        isHelpDialogDisplayed ? (React.createElement(Suspense, { fallback: null },
             React.createElement(HelpDialog, { handleClose: () => setHelpDialogDisplayed(false) }))) : null));
 }
 export default function EndAdornment({ showHelp, endAdornment, }) {

package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js

@@ -1,4 +1,4 @@
-import React, { useEffect, useState } from 'react';
+import React, { useEffect, useMemo, useState } from 'react';
 import { observer } from 'mobx-react';
 import { getSession, useDebounce, measureText } from '@jbrowse/core/util';
 import BaseResult, { RefSequenceResult, } from '@jbrowse/core/TextSearch/BaseResults';
@@ -6,7 +6,6 @@ import { Autocomplete } from '@mui/material';
 import { getDeduplicatedResult, getFiltered } from './util';
 import AutocompleteTextField from './AutocompleteTextField';
 const RefNameAutocomplete = observer(function ({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, maxWidth = 550, TextFieldProps = {}, }) {
-    var _a;
     const session = getSession(model);
     const { assemblyManager } = session;
     const [open, setOpen] = useState(false);
@@ -45,6 +44,14 @@ const RefNameAutocomplete = observer(function ({ model, onSelect, assemblyName,
     const inputBoxVal = coarseVisibleLocStrings || value || '';
     // heuristic, text width + 60 accommodates help icon and search icon
     const width = Math.min(Math.max(measureText(inputBoxVal, 14) + 100, minWidth), maxWidth);
+    const regions = assembly === null || assembly === void 0 ? void 0 : assembly.regions;
+    const regionOptions = useMemo(() => (regions === null || regions === void 0 ? void 0 : regions.map(option => ({
+        result: new RefSequenceResult({
+            refName: option.refName,
+            label: option.refName,
+            matchedAttribute: 'refName',
+        }),
+    }))) || [], [regions]);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked
     return (React.createElement(React.Fragment, null,
@@ -70,14 +77,6 @@ const RefNameAutocomplete = observer(function ({ model, onSelect, assemblyName,
                     onSelect === null || onSelect === void 0 ? void 0 : onSelect(selectedOption.result);
                 }
                 setInputValue(inputBoxVal);
-            }, options: !(searchOptions === null || searchOptions === void 0 ? void 0 : searchOptions.length)
-                ? ((_a = assembly === null || assembly === void 0 ? void 0 : assembly.regions) === null || _a === void 0 ? void 0 : _a.map(option => ({
-                    result: new RefSequenceResult({
-                        refName: option.refName,
-                        label: option.refName,
-                        matchedAttribute: 'refName',
-                    }),
-                }))) || []
-                : searchOptions, getOptionDisabled: option => option.group === 'limitOption', filterOptions: (opts, { inputValue }) => getFiltered(opts, inputValue), renderInput: params => (React.createElement(AutocompleteTextField, { showHelp: showHelp, params: params, inputBoxVal: inputBoxVal, TextFieldProps: TextFieldProps, setCurrentSearch: setCurrentSearch, setInputValue: setInputValue })), getOptionLabel: opt => typeof opt === 'string' ? opt : opt.result.getDisplayString() })));
+            }, options: (searchOptions === null || searchOptions === void 0 ? void 0 : searchOptions.length) ? searchOptions : regionOptions, getOptionDisabled: option => option.group === 'limitOption', filterOptions: (opts, { inputValue }) => getFiltered(opts, inputValue), renderInput: params => (React.createElement(AutocompleteTextField, { showHelp: showHelp, params: params, inputBoxVal: inputBoxVal, TextFieldProps: TextFieldProps, setCurrentSearch: setCurrentSearch, setInputValue: setInputValue })), getOptionLabel: opt => typeof opt === 'string' ? opt : opt.result.getDisplayString() })));
 });
 export default RefNameAutocomplete;

package/esm/LinearGenomeView/model.d.ts

@@ -238,19 +238,19 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     /**
      * #action
      */
-    toggleHeader(): void;
+    setHideHeader(b: boolean): void;
     /**
      * #action
      */
-    toggleHeaderOverview(): void;
+    setHideHeaderOverview(b: boolean): void;
     /**
      * #action
      */
-    toggleNoTracksActive(): void;
+    setHideNoTracksActive(b: boolean): void;
     /**
      * #action
      */
-    toggleShowGridlines(): void;
+    setShowGridlines(b: boolean): void;
     /**
      * #action
      */
@@ -306,7 +306,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     /**
      * #action
      */
-    toggleCenterLine(): void;
+    setShowCenterLine(b: boolean): void;
     /**
      * #action
      */

package/esm/LinearGenomeView/model.js

@@ -418,26 +418,26 @@ export function stateModelFactory(pluginManager) {
         /**
          * #action
          */
-        toggleHeader() {
-            self.hideHeader = !self.hideHeader;
+        setHideHeader(b) {
+            self.hideHeader = b;
         },
         /**
          * #action
          */
-        toggleHeaderOverview() {
-            self.hideHeaderOverview = !self.hideHeaderOverview;
+        setHideHeaderOverview(b) {
+            self.hideHeaderOverview = b;
         },
         /**
          * #action
          */
-        toggleNoTracksActive() {
-            self.hideNoTracksActive = !self.hideNoTracksActive;
+        setHideNoTracksActive(b) {
+            self.hideNoTracksActive = b;
         },
         /**
          * #action
          */
-        toggleShowGridlines() {
-            self.showGridlines = !self.showGridlines;
+        setShowGridlines(b) {
+            self.showGridlines = b;
         },
         /**
          * #action
@@ -613,8 +613,8 @@ export function stateModelFactory(pluginManager) {
         /**
          * #action
          */
-        toggleCenterLine() {
-            self.showCenterLine = !self.showCenterLine;
+        setShowCenterLine(b) {
+            self.showCenterLine = b;
         },
         /**
          * #action
@@ -891,32 +891,32 @@ export function stateModelFactory(pluginManager) {
                             label: 'Show center line',
                             type: 'checkbox',
                             checked: self.showCenterLine,
-                            onClick: self.toggleCenterLine,
+                            onClick: () => self.setShowCenterLine(!self.showCenterLine),
                         },
                         {
                             label: 'Show header',
                             type: 'checkbox',
                             checked: !self.hideHeader,
-                            onClick: self.toggleHeader,
+                            onClick: () => self.setHideHeader(!self.hideHeader),
                         },
                         {
                             label: 'Show header overview',
                             type: 'checkbox',
                             checked: !self.hideHeaderOverview,
-                            onClick: self.toggleHeaderOverview,
+                            onClick: () => self.setHideHeaderOverview(!self.hideHeaderOverview),
                             disabled: self.hideHeader,
                         },
                         {
                             label: 'Show no tracks active button',
                             type: 'checkbox',
                             checked: !self.hideNoTracksActive,
-                            onClick: self.toggleNoTracksActive,
+                            onClick: () => self.setHideNoTracksActive(!self.hideNoTracksActive),
                         },
                         {
                             label: 'Show guidelines',
                             type: 'checkbox',
                             checked: self.showGridlines,
-                            onClick: self.toggleShowGridlines,
+                            onClick: () => self.setShowGridlines(!self.showGridlines),
                         },
                         ...(canShowCytobands
                             ? [

package/esm/index.d.ts

@@ -964,10 +964,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -981,7 +981,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -1283,10 +1283,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -1300,7 +1300,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -1612,10 +1612,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -1629,7 +1629,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -1931,10 +1931,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -1948,7 +1948,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -2260,10 +2260,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -2277,7 +2277,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
@@ -2579,10 +2579,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setShowCytobands(flag: boolean): void;
                 setWidth(newWidth: number): void;
                 setError(error: unknown): void;
-                toggleHeader(): void;
-                toggleHeaderOverview(): void;
-                toggleNoTracksActive(): void;
-                toggleShowGridlines(): void;
+                setHideHeader(b: boolean): void;
+                setHideHeaderOverview(b: boolean): void;
+                setHideNoTracksActive(b: boolean): void;
+                setShowGridlines(b: boolean): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
@@ -2596,7 +2596,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
                 setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                toggleCenterLine(): void;
+                setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
                 getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "2.10.1",
+  "version": "2.10.2",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -63,5 +63,5 @@
     "access": "public"
   },
   "module": "esm/index.js",
-  "gitHead": "442b5f87efddfdf4ccf520b4d9dd01ddd370cb07"
+  "gitHead": "7ca3b7db337ebd88853e2d96cdab940ed550c4fb"
 }