@jbrowse/plugin-linear-genome-view 2.1.7 → 2.2.1

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Files changed (147) hide show
  1. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -2
  2. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +2 -22
  3. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  4. package/dist/BaseLinearDisplay/components/Tooltip.d.ts +1 -1
  5. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +149 -4
  6. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +600 -464
  7. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  8. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +19 -1
  9. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
  10. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +2 -2
  11. package/dist/BasicTrack/configSchema.d.ts +3 -0
  12. package/dist/BasicTrack/configSchema.js +18 -0
  13. package/dist/BasicTrack/configSchema.js.map +1 -0
  14. package/dist/BasicTrack/index.d.ts +3 -0
  15. package/dist/BasicTrack/index.js +18 -0
  16. package/dist/BasicTrack/index.js.map +1 -0
  17. package/dist/FeatureTrack/configSchema.d.ts +3 -0
  18. package/dist/FeatureTrack/configSchema.js +21 -0
  19. package/dist/FeatureTrack/configSchema.js.map +1 -0
  20. package/dist/FeatureTrack/index.d.ts +3 -0
  21. package/dist/FeatureTrack/index.js +18 -0
  22. package/dist/FeatureTrack/index.js.map +1 -0
  23. package/dist/LinearBareDisplay/configSchema.d.ts +5 -1
  24. package/dist/LinearBareDisplay/configSchema.js +12 -1
  25. package/dist/LinearBareDisplay/configSchema.js.map +1 -1
  26. package/dist/LinearBareDisplay/model.d.ts +16 -0
  27. package/dist/LinearBareDisplay/model.js +16 -0
  28. package/dist/LinearBareDisplay/model.js.map +1 -1
  29. package/dist/LinearBasicDisplay/configSchema.d.ts +5 -1
  30. package/dist/LinearBasicDisplay/configSchema.js +16 -1
  31. package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
  32. package/dist/LinearBasicDisplay/model.d.ts +79 -8
  33. package/dist/LinearBasicDisplay/model.js +167 -111
  34. package/dist/LinearBasicDisplay/model.js.map +1 -1
  35. package/dist/LinearGenomeView/components/CenterLine.d.ts +1 -1
  36. package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +1 -1
  37. package/dist/LinearGenomeView/components/Gridlines.d.ts +1 -1
  38. package/dist/LinearGenomeView/components/Header.d.ts +1 -1
  39. package/dist/LinearGenomeView/components/ImportForm.d.ts +1 -1
  40. package/dist/LinearGenomeView/components/ImportForm.js +38 -31
  41. package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
  42. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +1 -1
  43. package/dist/LinearGenomeView/components/LinearGenomeView.js +2 -24
  44. package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  45. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +1 -1
  46. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +7 -5
  47. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
  48. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +1 -1
  49. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +27 -35
  50. package/dist/LinearGenomeView/components/RubberBand.d.ts +1 -1
  51. package/dist/LinearGenomeView/components/ScaleBar.d.ts +1 -1
  52. package/dist/LinearGenomeView/components/TrackContainer.d.ts +1 -1
  53. package/dist/LinearGenomeView/components/TrackContainer.js +12 -9
  54. package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -1
  55. package/dist/LinearGenomeView/components/TrackLabel.js +9 -1
  56. package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
  57. package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  58. package/dist/LinearGenomeView/index.d.ts +273 -18
  59. package/dist/LinearGenomeView/index.js +409 -90
  60. package/dist/LinearGenomeView/index.js.map +1 -1
  61. package/dist/index.d.ts +30 -90
  62. package/dist/index.js +4 -25
  63. package/dist/index.js.map +1 -1
  64. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -2
  65. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +2 -22
  66. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  67. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +1 -1
  68. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +149 -4
  69. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +600 -464
  70. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  71. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +19 -1
  72. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
  73. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +2 -2
  74. package/esm/BasicTrack/configSchema.d.ts +3 -0
  75. package/esm/BasicTrack/configSchema.js +16 -0
  76. package/esm/BasicTrack/configSchema.js.map +1 -0
  77. package/esm/BasicTrack/index.d.ts +3 -0
  78. package/esm/BasicTrack/index.js +13 -0
  79. package/esm/BasicTrack/index.js.map +1 -0
  80. package/esm/FeatureTrack/configSchema.d.ts +3 -0
  81. package/esm/FeatureTrack/configSchema.js +19 -0
  82. package/esm/FeatureTrack/configSchema.js.map +1 -0
  83. package/esm/FeatureTrack/index.d.ts +3 -0
  84. package/esm/FeatureTrack/index.js +13 -0
  85. package/esm/FeatureTrack/index.js.map +1 -0
  86. package/esm/LinearBareDisplay/configSchema.d.ts +5 -1
  87. package/esm/LinearBareDisplay/configSchema.js +14 -2
  88. package/esm/LinearBareDisplay/configSchema.js.map +1 -1
  89. package/esm/LinearBareDisplay/model.d.ts +16 -0
  90. package/esm/LinearBareDisplay/model.js +16 -0
  91. package/esm/LinearBareDisplay/model.js.map +1 -1
  92. package/esm/LinearBasicDisplay/configSchema.d.ts +5 -1
  93. package/esm/LinearBasicDisplay/configSchema.js +18 -2
  94. package/esm/LinearBasicDisplay/configSchema.js.map +1 -1
  95. package/esm/LinearBasicDisplay/model.d.ts +79 -8
  96. package/esm/LinearBasicDisplay/model.js +167 -111
  97. package/esm/LinearBasicDisplay/model.js.map +1 -1
  98. package/esm/LinearGenomeView/components/CenterLine.d.ts +1 -1
  99. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +1 -1
  100. package/esm/LinearGenomeView/components/Gridlines.d.ts +1 -1
  101. package/esm/LinearGenomeView/components/Header.d.ts +1 -1
  102. package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -1
  103. package/esm/LinearGenomeView/components/ImportForm.js +40 -33
  104. package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
  105. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +1 -1
  106. package/esm/LinearGenomeView/components/LinearGenomeView.js +3 -25
  107. package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  108. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +1 -1
  109. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +7 -5
  110. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
  111. package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +1 -1
  112. package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +27 -35
  113. package/esm/LinearGenomeView/components/RubberBand.d.ts +1 -1
  114. package/esm/LinearGenomeView/components/ScaleBar.d.ts +1 -1
  115. package/esm/LinearGenomeView/components/TrackContainer.d.ts +1 -1
  116. package/esm/LinearGenomeView/components/TrackContainer.js +13 -10
  117. package/esm/LinearGenomeView/components/TrackContainer.js.map +1 -1
  118. package/esm/LinearGenomeView/components/TrackLabel.js +9 -1
  119. package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
  120. package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  121. package/esm/LinearGenomeView/index.d.ts +273 -18
  122. package/esm/LinearGenomeView/index.js +409 -90
  123. package/esm/LinearGenomeView/index.js.map +1 -1
  124. package/esm/index.d.ts +30 -90
  125. package/esm/index.js +4 -25
  126. package/esm/index.js.map +1 -1
  127. package/package.json +2 -2
  128. package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +2 -24
  129. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +695 -555
  130. package/src/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.ts +20 -1
  131. package/src/BasicTrack/configSchema.ts +23 -0
  132. package/src/BasicTrack/index.ts +18 -0
  133. package/src/FeatureTrack/configSchema.ts +27 -0
  134. package/src/FeatureTrack/index.ts +21 -0
  135. package/src/LinearBareDisplay/configSchema.ts +15 -2
  136. package/src/LinearBareDisplay/model.ts +16 -0
  137. package/src/LinearBasicDisplay/configSchema.ts +19 -2
  138. package/src/LinearBasicDisplay/model.ts +63 -11
  139. package/src/LinearGenomeView/components/ImportForm.tsx +85 -67
  140. package/src/LinearGenomeView/components/LinearGenomeView.tsx +3 -33
  141. package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +21 -18
  142. package/src/LinearGenomeView/components/TrackContainer.tsx +38 -27
  143. package/src/LinearGenomeView/components/TrackLabel.tsx +10 -1
  144. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +204 -204
  145. package/src/LinearGenomeView/index.test.ts +33 -26
  146. package/src/LinearGenomeView/index.tsx +471 -133
  147. package/src/index.ts +6 -46
package/src/index.ts CHANGED
@@ -1,11 +1,6 @@
1
1
  import { lazy } from 'react'
2
2
  import { when } from 'mobx'
3
- import { ConfigurationSchema } from '@jbrowse/core/configuration'
4
- import {
5
- createBaseTrackConfig,
6
- createBaseTrackModel,
7
- } from '@jbrowse/core/pluggableElementTypes/models'
8
- import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType'
3
+
9
4
  import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType'
10
5
  import ViewType from '@jbrowse/core/pluggableElementTypes/ViewType'
11
6
  import Plugin from '@jbrowse/core/Plugin'
@@ -38,6 +33,9 @@ import {
38
33
  modelFactory as linearBasicDisplayModelFactory,
39
34
  } from './LinearBasicDisplay'
40
35
 
36
+ import FeatureTrackF from './FeatureTrack'
37
+ import BasicTrackF from './BasicTrack'
38
+
41
39
  type LGV = LinearGenomeViewModel
42
40
 
43
41
  export default class LinearGenomeViewPlugin extends Plugin {
@@ -53,46 +51,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
53
51
  }
54
52
 
55
53
  install(pluginManager: PluginManager) {
56
- pluginManager.addTrackType(() => {
57
- const configSchema = ConfigurationSchema(
58
- 'FeatureTrack',
59
- {},
60
- {
61
- baseConfiguration: createBaseTrackConfig(pluginManager),
62
- explicitIdentifier: 'trackId',
63
- },
64
- )
65
- return new TrackType({
66
- name: 'FeatureTrack',
67
- configSchema,
68
- stateModel: createBaseTrackModel(
69
- pluginManager,
70
- 'FeatureTrack',
71
- configSchema,
72
- ),
73
- })
74
- })
75
-
76
- pluginManager.addTrackType(() => {
77
- const configSchema = ConfigurationSchema(
78
- 'BasicTrack',
79
- {},
80
- {
81
- baseConfiguration: createBaseTrackConfig(pluginManager),
82
- explicitIdentifier: 'trackId',
83
- },
84
- )
85
- return new TrackType({
86
- name: 'BasicTrack',
87
- configSchema,
88
- stateModel: createBaseTrackModel(
89
- pluginManager,
90
- 'BasicTrack',
91
- configSchema,
92
- ),
93
- })
94
- })
95
-
54
+ FeatureTrackF(pluginManager)
55
+ BasicTrackF(pluginManager)
96
56
  pluginManager.addDisplayType(() => {
97
57
  const configSchema = linearBareDisplayConfigSchemaFactory(pluginManager)
98
58
  return new DisplayType({