@jbrowse/plugin-linear-genome-view 2.1.7 → 2.2.0

package/esm/LinearGenomeView/index.js.map

@@ -1 +1 @@
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package/esm/index.d.ts

@@ -761,19 +761,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
                 readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: {
-                    start: number;
-                    end: number;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
+                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 readonly visibleLocStrings: string;
                 readonly coarseVisibleLocStrings: string;
             } & {
@@ -781,7 +769,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -963,19 +951,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
                 readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: {
-                    start: number;
-                    end: number;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
+                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 readonly visibleLocStrings: string;
                 readonly coarseVisibleLocStrings: string;
             } & {
@@ -983,7 +959,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1175,19 +1151,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
                 readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: {
-                    start: number;
-                    end: number;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
+                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 readonly visibleLocStrings: string;
                 readonly coarseVisibleLocStrings: string;
             } & {
@@ -1195,7 +1159,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1377,19 +1341,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
                 readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: {
-                    start: number;
-                    end: number;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
+                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 readonly visibleLocStrings: string;
                 readonly coarseVisibleLocStrings: string;
             } & {
@@ -1397,7 +1349,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1589,19 +1541,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
                 readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: {
-                    start: number;
-                    end: number;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
+                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 readonly visibleLocStrings: string;
                 readonly coarseVisibleLocStrings: string;
             } & {
@@ -1609,7 +1549,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -1791,19 +1731,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
                 readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: {
-                    start: number;
-                    end: number;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
+                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 readonly visibleLocStrings: string;
                 readonly coarseVisibleLocStrings: string;
             } & {
@@ -1811,7 +1739,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {

package/esm/index.js

@@ -1,8 +1,5 @@
 import { lazy } from 'react';
 import { when } from 'mobx';
-import { ConfigurationSchema } from '@jbrowse/core/configuration';
-import { createBaseTrackConfig, createBaseTrackModel, } from '@jbrowse/core/pluggableElementTypes/models';
-import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
 import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
 import ViewType from '@jbrowse/core/pluggableElementTypes/ViewType';
 import Plugin from '@jbrowse/core/Plugin';
@@ -12,6 +9,8 @@ import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigS
 import { configSchemaFactory as linearBareDisplayConfigSchemaFactory, stateModelFactory as LinearBareDisplayStateModelFactory, } from './LinearBareDisplay';
 import { stateModelFactory as linearGenomeViewStateModelFactory, renderToSvg, RefNameAutocomplete, SearchBox, ZoomControls, LinearGenomeView, } from './LinearGenomeView';
 import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
+import FeatureTrackF from './FeatureTrack';
+import BasicTrackF from './BasicTrack';
 export default class LinearGenomeViewPlugin extends Plugin {
     constructor() {
         super(...arguments);
@@ -26,28 +25,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
         };
     }
     install(pluginManager) {
-        pluginManager.addTrackType(() => {
-            const configSchema = ConfigurationSchema('FeatureTrack', {}, {
-                baseConfiguration: createBaseTrackConfig(pluginManager),
-                explicitIdentifier: 'trackId',
-            });
-            return new TrackType({
-                name: 'FeatureTrack',
-                configSchema,
-                stateModel: createBaseTrackModel(pluginManager, 'FeatureTrack', configSchema),
-            });
-        });
-        pluginManager.addTrackType(() => {
-            const configSchema = ConfigurationSchema('BasicTrack', {}, {
-                baseConfiguration: createBaseTrackConfig(pluginManager),
-                explicitIdentifier: 'trackId',
-            });
-            return new TrackType({
-                name: 'BasicTrack',
-                configSchema,
-                stateModel: createBaseTrackModel(pluginManager, 'BasicTrack', configSchema),
-            });
-        });
+        FeatureTrackF(pluginManager);
+        BasicTrackF(pluginManager);
         pluginManager.addDisplayType(() => {
             const configSchema = linearBareDisplayConfigSchemaFactory(pluginManager);
             return new DisplayType({

package/esm/index.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "2.1.7",
+  "version": "2.2.0",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -65,5 +65,5 @@
     "access": "public"
   },
   "module": "esm/index.js",
-  "gitHead": "a1344081f61e22e0f597517efa7386023eef9f33"
+  "gitHead": "cf31db8d833117f8822510340664fb3f045975cb"
 }

package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx

@@ -1,8 +1,8 @@
 import React, { useEffect, useState } from 'react'
-import { Typography } from '@mui/material'
 import { makeStyles } from 'tss-react/mui'
 import { observer } from 'mobx-react'
 import { getParent } from 'mobx-state-tree'
+import { LoadingEllipses } from '@jbrowse/core/ui'
 import RefreshIcon from '@mui/icons-material/Refresh'
 
 import BlockMsg from './BlockMsg'
@@ -18,26 +18,6 @@ const useStyles = makeStyles()(theme => ({
     pointerEvents: 'none',
     textAlign: 'center',
   },
-  dots: {
-    '&::after': {
-      display: 'inline-block',
-      animation: '$ellipsis 1.5s infinite',
-      content: '"."',
-      width: '1em',
-      textAlign: 'left',
-    },
-  },
-  '@keyframes ellipsis': {
-    '0%': {
-      content: '"."',
-    },
-    '33%': {
-      content: '".."',
-    },
-    '66%': {
-      content: '"..."',
-    },
-  },
 }))
 
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
@@ -66,9 +46,7 @@ const LoadingMessage = observer(({ model }: { model: any }) => {
     <>
       {shown ? (
         <div className={classes.loading}>
-          <Typography className={classes.dots} variant="body2">
-            {status ? `${status}` : 'Loading'}
-          </Typography>
+          <LoadingEllipses message={status} />
         </div>
       ) : null}
     </>