npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.1.4 → 2.1.6 - Mend

@jbrowse/plugin-linear-genome-view 2.1.4 → 2.1.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (104) hide show

package/esm/index.d.ts CHANGED Viewed

@@ -150,7 +150,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly adapterConfig: any;
                 readonly parentTrack: any;
                 renderProps(): any;
-                readonly rendererType: any;
+                readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
                 readonly DisplayMessageComponent: import("react").FC<any> | undefined;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
@@ -217,7 +217,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 contextMenuItems(): {
                     label: string;
@@ -328,7 +328,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly adapterConfig: any;
                 readonly parentTrack: any;
                 renderProps(): any;
-                readonly rendererType: any;
+                readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
                 readonly DisplayMessageComponent: import("react").FC<any> | undefined;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
@@ -395,7 +395,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 contextMenuItems(): {
                     label: string;
@@ -516,7 +516,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly adapterConfig: any;
             readonly parentTrack: any;
             renderProps(): any;
-            readonly rendererType: any;
+            readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
             readonly DisplayMessageComponent: import("react").FC<any> | undefined;
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
@@ -583,7 +583,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             afterAttach(): void;
         } & {
             regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-            regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+            regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             contextMenuItems(): {
                 label: string;
@@ -606,6 +606,1249 @@ export default class LinearGenomeViewPlugin extends Plugin {
             userByteSizeLimit: number | undefined;
         }>;
         baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        SearchBox: ({ model, showHelp, }: {
+            showHelp?: boolean | undefined;
+            model: {
+                id: string;
+                displayName: string | undefined;
+                type: "LinearGenomeView";
+                offsetPx: number;
+                bpPerPx: number;
+                displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+                tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                hideHeader: boolean;
+                hideHeaderOverview: boolean;
+                hideNoTracksActive: boolean;
+                trackSelectorType: string;
+                trackLabels: string;
+                showCenterLine: boolean;
+                showCytobandsSetting: boolean;
+                showGridlines: boolean;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                width: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                setDisplayName(name: string): void;
+                setWidth(newWidth: number): void;
+            } & {
+                volatileWidth: number | undefined;
+                minimumBlockWidth: number;
+                draggingTrackId: string | undefined;
+                volatileError: Error | undefined;
+                afterDisplayedRegionsSetCallbacks: Function[];
+                scaleFactor: number;
+                trackRefs: {
+                    [key: string]: any;
+                };
+                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+                coarseTotalBp: number;
+                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
+                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
+                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
+                searchQuery: string | undefined;
+                seqDialogDisplayed: boolean;
+            } & {
+                readonly width: number;
+                readonly interRegionPaddingWidth: number;
+                readonly assemblyNames: string[];
+            } & {
+                MiniControlsComponent(): import("react").FC<any>;
+                HeaderComponent(): import("react").FC<any>;
+                readonly assemblyErrors: string;
+                readonly assembliesInitialized: boolean;
+                readonly initialized: boolean;
+                readonly hasDisplayedRegions: boolean;
+                readonly isSearchDialogDisplayed: boolean;
+                readonly scaleBarHeight: number;
+                readonly headerHeight: number;
+                readonly trackHeights: any;
+                readonly trackHeightsWithResizeHandles: any;
+                readonly height: any;
+                readonly totalBp: number;
+                readonly maxBpPerPx: number;
+                readonly minBpPerPx: number;
+                readonly error: string | Error;
+                readonly maxOffset: number;
+                readonly minOffset: number;
+                readonly displayedRegionsTotalPx: number;
+                renderProps(): any;
+                searchScope(assemblyName: string): {
+                    assemblyName: string;
+                    includeAggregateIndexes: boolean;
+                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                };
+                getTrack(id: string): any;
+                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
+                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
+                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
+            } & {
+                setShowCytobands(flag: boolean): void;
+                setWidth(newWidth: number): void;
+                setError(error: Error | undefined): void;
+                toggleHeader(): void;
+                toggleHeaderOverview(): void;
+                toggleNoTracksActive(): void;
+                toggleShowGridlines(): void;
+                scrollTo(offsetPx: number): number;
+                zoomTo(bpPerPx: number): number;
+                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
+                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
+                setGetSequenceDialogOpen(open: boolean): void;
+                setNewView(bpPerPx: number, offsetPx: number): void;
+                horizontallyFlip(): void;
+                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
+                hideTrack(trackId: string): number;
+            } & {
+                moveTrack(movingId: string, targetId: string): void;
+                closeView(): void;
+                toggleTrack(trackId: string): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                toggleCenterLine(): void;
+                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                activateTrackSelector(): import("@jbrowse/core/util").Widget;
+                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                afterDisplayedRegionsSet(cb: Function): void;
+                horizontalScroll(distance: number): number;
+                center(): void;
+                showAllRegions(): void;
+                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
+                setDraggingTrackId(idx?: string | undefined): void;
+                setScaleFactor(factor: number): void;
+                clearView(): void;
+                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
+            } & {
+                slide: (viewWidths: number) => void;
+            } & {
+                zoom: (targetBpPerPx: number) => void;
+            } & {
+                readonly canShowCytobands: boolean;
+                readonly showCytobands: boolean;
+                readonly anyCytobandsExist: boolean;
+                readonly cytobandOffset: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly roundedDynamicBlocks: {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                readonly visibleLocStrings: string;
+                readonly coarseVisibleLocStrings: string;
+            } & {
+                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
+                afterAttach(): void;
+            } & {
+                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navTo(query: import("./LinearGenomeView").NavLocation): void;
+                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
+            } & {
+                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                bpToPx({ refName, coord, regionNumber, }: {
+                    refName: string;
+                    coord: number;
+                    regionNumber?: number | undefined;
+                }): {
+                    index: number;
+                    offsetPx: number;
+                } | undefined;
+                centerAt(coord: number, refName: string, regionNumber: number): void;
+                pxToBp(px: number): {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                };
+                readonly centerLineInfo: {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                } | undefined;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            } & {
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
+                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
+                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
+                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
+                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+            }, {
+                width: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                setDisplayName(name: string): void;
+                setWidth(newWidth: number): void;
+            } & {
+                volatileWidth: number | undefined;
+                minimumBlockWidth: number;
+                draggingTrackId: string | undefined;
+                volatileError: Error | undefined;
+                afterDisplayedRegionsSetCallbacks: Function[];
+                scaleFactor: number;
+                trackRefs: {
+                    [key: string]: any;
+                };
+                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+                coarseTotalBp: number;
+                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
+                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
+                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
+                searchQuery: string | undefined;
+                seqDialogDisplayed: boolean;
+            } & {
+                readonly width: number;
+                readonly interRegionPaddingWidth: number;
+                readonly assemblyNames: string[];
+            } & {
+                MiniControlsComponent(): import("react").FC<any>;
+                HeaderComponent(): import("react").FC<any>;
+                readonly assemblyErrors: string;
+                readonly assembliesInitialized: boolean;
+                readonly initialized: boolean;
+                readonly hasDisplayedRegions: boolean;
+                readonly isSearchDialogDisplayed: boolean;
+                readonly scaleBarHeight: number;
+                readonly headerHeight: number;
+                readonly trackHeights: any;
+                readonly trackHeightsWithResizeHandles: any;
+                readonly height: any;
+                readonly totalBp: number;
+                readonly maxBpPerPx: number;
+                readonly minBpPerPx: number;
+                readonly error: string | Error;
+                readonly maxOffset: number;
+                readonly minOffset: number;
+                readonly displayedRegionsTotalPx: number;
+                renderProps(): any;
+                searchScope(assemblyName: string): {
+                    assemblyName: string;
+                    includeAggregateIndexes: boolean;
+                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                };
+                getTrack(id: string): any;
+                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
+                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
+                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
+            } & {
+                setShowCytobands(flag: boolean): void;
+                setWidth(newWidth: number): void;
+                setError(error: Error | undefined): void;
+                toggleHeader(): void;
+                toggleHeaderOverview(): void;
+                toggleNoTracksActive(): void;
+                toggleShowGridlines(): void;
+                scrollTo(offsetPx: number): number;
+                zoomTo(bpPerPx: number): number;
+                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
+                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
+                setGetSequenceDialogOpen(open: boolean): void;
+                setNewView(bpPerPx: number, offsetPx: number): void;
+                horizontallyFlip(): void;
+                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
+                hideTrack(trackId: string): number;
+            } & {
+                moveTrack(movingId: string, targetId: string): void;
+                closeView(): void;
+                toggleTrack(trackId: string): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                toggleCenterLine(): void;
+                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                activateTrackSelector(): import("@jbrowse/core/util").Widget;
+                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                afterDisplayedRegionsSet(cb: Function): void;
+                horizontalScroll(distance: number): number;
+                center(): void;
+                showAllRegions(): void;
+                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
+                setDraggingTrackId(idx?: string | undefined): void;
+                setScaleFactor(factor: number): void;
+                clearView(): void;
+                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
+            } & {
+                slide: (viewWidths: number) => void;
+            } & {
+                zoom: (targetBpPerPx: number) => void;
+            } & {
+                readonly canShowCytobands: boolean;
+                readonly showCytobands: boolean;
+                readonly anyCytobandsExist: boolean;
+                readonly cytobandOffset: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly roundedDynamicBlocks: {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                readonly visibleLocStrings: string;
+                readonly coarseVisibleLocStrings: string;
+            } & {
+                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
+                afterAttach(): void;
+            } & {
+                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navTo(query: import("./LinearGenomeView").NavLocation): void;
+                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
+            } & {
+                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                bpToPx({ refName, coord, regionNumber, }: {
+                    refName: string;
+                    coord: number;
+                    regionNumber?: number | undefined;
+                }): {
+                    index: number;
+                    offsetPx: number;
+                } | undefined;
+                centerAt(coord: number, refName: string, regionNumber: number): void;
+                pxToBp(px: number): {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                };
+                readonly centerLineInfo: {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                } | undefined;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }) => JSX.Element;
+        ZoomControls: ({ model }: {
+            model: {
+                id: string;
+                displayName: string | undefined;
+                type: "LinearGenomeView";
+                offsetPx: number;
+                bpPerPx: number;
+                displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+                tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                hideHeader: boolean;
+                hideHeaderOverview: boolean;
+                hideNoTracksActive: boolean;
+                trackSelectorType: string;
+                trackLabels: string;
+                showCenterLine: boolean;
+                showCytobandsSetting: boolean;
+                showGridlines: boolean;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                width: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                setDisplayName(name: string): void;
+                setWidth(newWidth: number): void;
+            } & {
+                volatileWidth: number | undefined;
+                minimumBlockWidth: number;
+                draggingTrackId: string | undefined;
+                volatileError: Error | undefined;
+                afterDisplayedRegionsSetCallbacks: Function[];
+                scaleFactor: number;
+                trackRefs: {
+                    [key: string]: any;
+                };
+                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+                coarseTotalBp: number;
+                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
+                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
+                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
+                searchQuery: string | undefined;
+                seqDialogDisplayed: boolean;
+            } & {
+                readonly width: number;
+                readonly interRegionPaddingWidth: number;
+                readonly assemblyNames: string[];
+            } & {
+                MiniControlsComponent(): import("react").FC<any>;
+                HeaderComponent(): import("react").FC<any>;
+                readonly assemblyErrors: string;
+                readonly assembliesInitialized: boolean;
+                readonly initialized: boolean;
+                readonly hasDisplayedRegions: boolean;
+                readonly isSearchDialogDisplayed: boolean;
+                readonly scaleBarHeight: number;
+                readonly headerHeight: number;
+                readonly trackHeights: any;
+                readonly trackHeightsWithResizeHandles: any;
+                readonly height: any;
+                readonly totalBp: number;
+                readonly maxBpPerPx: number;
+                readonly minBpPerPx: number;
+                readonly error: string | Error;
+                readonly maxOffset: number;
+                readonly minOffset: number;
+                readonly displayedRegionsTotalPx: number;
+                renderProps(): any;
+                searchScope(assemblyName: string): {
+                    assemblyName: string;
+                    includeAggregateIndexes: boolean;
+                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                };
+                getTrack(id: string): any;
+                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
+                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
+                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
+            } & {
+                setShowCytobands(flag: boolean): void;
+                setWidth(newWidth: number): void;
+                setError(error: Error | undefined): void;
+                toggleHeader(): void;
+                toggleHeaderOverview(): void;
+                toggleNoTracksActive(): void;
+                toggleShowGridlines(): void;
+                scrollTo(offsetPx: number): number;
+                zoomTo(bpPerPx: number): number;
+                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
+                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
+                setGetSequenceDialogOpen(open: boolean): void;
+                setNewView(bpPerPx: number, offsetPx: number): void;
+                horizontallyFlip(): void;
+                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
+                hideTrack(trackId: string): number;
+            } & {
+                moveTrack(movingId: string, targetId: string): void;
+                closeView(): void;
+                toggleTrack(trackId: string): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                toggleCenterLine(): void;
+                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                activateTrackSelector(): import("@jbrowse/core/util").Widget;
+                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                afterDisplayedRegionsSet(cb: Function): void;
+                horizontalScroll(distance: number): number;
+                center(): void;
+                showAllRegions(): void;
+                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
+                setDraggingTrackId(idx?: string | undefined): void;
+                setScaleFactor(factor: number): void;
+                clearView(): void;
+                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
+            } & {
+                slide: (viewWidths: number) => void;
+            } & {
+                zoom: (targetBpPerPx: number) => void;
+            } & {
+                readonly canShowCytobands: boolean;
+                readonly showCytobands: boolean;
+                readonly anyCytobandsExist: boolean;
+                readonly cytobandOffset: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly roundedDynamicBlocks: {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                readonly visibleLocStrings: string;
+                readonly coarseVisibleLocStrings: string;
+            } & {
+                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
+                afterAttach(): void;
+            } & {
+                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navTo(query: import("./LinearGenomeView").NavLocation): void;
+                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
+            } & {
+                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                bpToPx({ refName, coord, regionNumber, }: {
+                    refName: string;
+                    coord: number;
+                    regionNumber?: number | undefined;
+                }): {
+                    index: number;
+                    offsetPx: number;
+                } | undefined;
+                centerAt(coord: number, refName: string, regionNumber: number): void;
+                pxToBp(px: number): {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                };
+                readonly centerLineInfo: {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                } | undefined;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            } & {
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
+                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
+                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
+                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
+                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+            }, {
+                width: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                setDisplayName(name: string): void;
+                setWidth(newWidth: number): void;
+            } & {
+                volatileWidth: number | undefined;
+                minimumBlockWidth: number;
+                draggingTrackId: string | undefined;
+                volatileError: Error | undefined;
+                afterDisplayedRegionsSetCallbacks: Function[];
+                scaleFactor: number;
+                trackRefs: {
+                    [key: string]: any;
+                };
+                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+                coarseTotalBp: number;
+                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
+                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
+                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
+                searchQuery: string | undefined;
+                seqDialogDisplayed: boolean;
+            } & {
+                readonly width: number;
+                readonly interRegionPaddingWidth: number;
+                readonly assemblyNames: string[];
+            } & {
+                MiniControlsComponent(): import("react").FC<any>;
+                HeaderComponent(): import("react").FC<any>;
+                readonly assemblyErrors: string;
+                readonly assembliesInitialized: boolean;
+                readonly initialized: boolean;
+                readonly hasDisplayedRegions: boolean;
+                readonly isSearchDialogDisplayed: boolean;
+                readonly scaleBarHeight: number;
+                readonly headerHeight: number;
+                readonly trackHeights: any;
+                readonly trackHeightsWithResizeHandles: any;
+                readonly height: any;
+                readonly totalBp: number;
+                readonly maxBpPerPx: number;
+                readonly minBpPerPx: number;
+                readonly error: string | Error;
+                readonly maxOffset: number;
+                readonly minOffset: number;
+                readonly displayedRegionsTotalPx: number;
+                renderProps(): any;
+                searchScope(assemblyName: string): {
+                    assemblyName: string;
+                    includeAggregateIndexes: boolean;
+                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                };
+                getTrack(id: string): any;
+                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
+                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
+                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
+            } & {
+                setShowCytobands(flag: boolean): void;
+                setWidth(newWidth: number): void;
+                setError(error: Error | undefined): void;
+                toggleHeader(): void;
+                toggleHeaderOverview(): void;
+                toggleNoTracksActive(): void;
+                toggleShowGridlines(): void;
+                scrollTo(offsetPx: number): number;
+                zoomTo(bpPerPx: number): number;
+                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
+                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
+                setGetSequenceDialogOpen(open: boolean): void;
+                setNewView(bpPerPx: number, offsetPx: number): void;
+                horizontallyFlip(): void;
+                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
+                hideTrack(trackId: string): number;
+            } & {
+                moveTrack(movingId: string, targetId: string): void;
+                closeView(): void;
+                toggleTrack(trackId: string): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                toggleCenterLine(): void;
+                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                activateTrackSelector(): import("@jbrowse/core/util").Widget;
+                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                afterDisplayedRegionsSet(cb: Function): void;
+                horizontalScroll(distance: number): number;
+                center(): void;
+                showAllRegions(): void;
+                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
+                setDraggingTrackId(idx?: string | undefined): void;
+                setScaleFactor(factor: number): void;
+                clearView(): void;
+                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
+            } & {
+                slide: (viewWidths: number) => void;
+            } & {
+                zoom: (targetBpPerPx: number) => void;
+            } & {
+                readonly canShowCytobands: boolean;
+                readonly showCytobands: boolean;
+                readonly anyCytobandsExist: boolean;
+                readonly cytobandOffset: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly roundedDynamicBlocks: {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                readonly visibleLocStrings: string;
+                readonly coarseVisibleLocStrings: string;
+            } & {
+                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
+                afterAttach(): void;
+            } & {
+                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navTo(query: import("./LinearGenomeView").NavLocation): void;
+                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
+            } & {
+                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                bpToPx({ refName, coord, regionNumber, }: {
+                    refName: string;
+                    coord: number;
+                    regionNumber?: number | undefined;
+                }): {
+                    index: number;
+                    offsetPx: number;
+                } | undefined;
+                centerAt(coord: number, refName: string, regionNumber: number): void;
+                pxToBp(px: number): {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                };
+                readonly centerLineInfo: {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                } | undefined;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }) => JSX.Element;
+        LinearGenomeView: ({ model }: {
+            model: {
+                id: string;
+                displayName: string | undefined;
+                type: "LinearGenomeView";
+                offsetPx: number;
+                bpPerPx: number;
+                displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+                tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                hideHeader: boolean;
+                hideHeaderOverview: boolean;
+                hideNoTracksActive: boolean;
+                trackSelectorType: string;
+                trackLabels: string;
+                showCenterLine: boolean;
+                showCytobandsSetting: boolean;
+                showGridlines: boolean;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                width: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                setDisplayName(name: string): void;
+                setWidth(newWidth: number): void;
+            } & {
+                volatileWidth: number | undefined;
+                minimumBlockWidth: number;
+                draggingTrackId: string | undefined;
+                volatileError: Error | undefined;
+                afterDisplayedRegionsSetCallbacks: Function[];
+                scaleFactor: number;
+                trackRefs: {
+                    [key: string]: any;
+                };
+                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+                coarseTotalBp: number;
+                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
+                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
+                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
+                searchQuery: string | undefined;
+                seqDialogDisplayed: boolean;
+            } & {
+                readonly width: number;
+                readonly interRegionPaddingWidth: number;
+                readonly assemblyNames: string[];
+            } & {
+                MiniControlsComponent(): import("react").FC<any>;
+                HeaderComponent(): import("react").FC<any>;
+                readonly assemblyErrors: string;
+                readonly assembliesInitialized: boolean;
+                readonly initialized: boolean;
+                readonly hasDisplayedRegions: boolean;
+                readonly isSearchDialogDisplayed: boolean;
+                readonly scaleBarHeight: number;
+                readonly headerHeight: number;
+                readonly trackHeights: any;
+                readonly trackHeightsWithResizeHandles: any;
+                readonly height: any;
+                readonly totalBp: number;
+                readonly maxBpPerPx: number;
+                readonly minBpPerPx: number;
+                readonly error: string | Error;
+                readonly maxOffset: number;
+                readonly minOffset: number;
+                readonly displayedRegionsTotalPx: number;
+                renderProps(): any;
+                searchScope(assemblyName: string): {
+                    assemblyName: string;
+                    includeAggregateIndexes: boolean;
+                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                };
+                getTrack(id: string): any;
+                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
+                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
+                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
+            } & {
+                setShowCytobands(flag: boolean): void;
+                setWidth(newWidth: number): void;
+                setError(error: Error | undefined): void;
+                toggleHeader(): void;
+                toggleHeaderOverview(): void;
+                toggleNoTracksActive(): void;
+                toggleShowGridlines(): void;
+                scrollTo(offsetPx: number): number;
+                zoomTo(bpPerPx: number): number;
+                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
+                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
+                setGetSequenceDialogOpen(open: boolean): void;
+                setNewView(bpPerPx: number, offsetPx: number): void;
+                horizontallyFlip(): void;
+                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
+                hideTrack(trackId: string): number;
+            } & {
+                moveTrack(movingId: string, targetId: string): void;
+                closeView(): void;
+                toggleTrack(trackId: string): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                toggleCenterLine(): void;
+                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                activateTrackSelector(): import("@jbrowse/core/util").Widget;
+                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                afterDisplayedRegionsSet(cb: Function): void;
+                horizontalScroll(distance: number): number;
+                center(): void;
+                showAllRegions(): void;
+                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
+                setDraggingTrackId(idx?: string | undefined): void;
+                setScaleFactor(factor: number): void;
+                clearView(): void;
+                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
+            } & {
+                slide: (viewWidths: number) => void;
+            } & {
+                zoom: (targetBpPerPx: number) => void;
+            } & {
+                readonly canShowCytobands: boolean;
+                readonly showCytobands: boolean;
+                readonly anyCytobandsExist: boolean;
+                readonly cytobandOffset: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly roundedDynamicBlocks: {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                readonly visibleLocStrings: string;
+                readonly coarseVisibleLocStrings: string;
+            } & {
+                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
+                afterAttach(): void;
+            } & {
+                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navTo(query: import("./LinearGenomeView").NavLocation): void;
+                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
+            } & {
+                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                bpToPx({ refName, coord, regionNumber, }: {
+                    refName: string;
+                    coord: number;
+                    regionNumber?: number | undefined;
+                }): {
+                    index: number;
+                    offsetPx: number;
+                } | undefined;
+                centerAt(coord: number, refName: string, regionNumber: number): void;
+                pxToBp(px: number): {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                };
+                readonly centerLineInfo: {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                } | undefined;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            } & {
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
+                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
+                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
+                displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
+                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+            }, {
+                width: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                setDisplayName(name: string): void;
+                setWidth(newWidth: number): void;
+            } & {
+                volatileWidth: number | undefined;
+                minimumBlockWidth: number;
+                draggingTrackId: string | undefined;
+                volatileError: Error | undefined;
+                afterDisplayedRegionsSetCallbacks: Function[];
+                scaleFactor: number;
+                trackRefs: {
+                    [key: string]: any;
+                };
+                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+                coarseTotalBp: number;
+                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
+                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
+                searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
+                searchQuery: string | undefined;
+                seqDialogDisplayed: boolean;
+            } & {
+                readonly width: number;
+                readonly interRegionPaddingWidth: number;
+                readonly assemblyNames: string[];
+            } & {
+                MiniControlsComponent(): import("react").FC<any>;
+                HeaderComponent(): import("react").FC<any>;
+                readonly assemblyErrors: string;
+                readonly assembliesInitialized: boolean;
+                readonly initialized: boolean;
+                readonly hasDisplayedRegions: boolean;
+                readonly isSearchDialogDisplayed: boolean;
+                readonly scaleBarHeight: number;
+                readonly headerHeight: number;
+                readonly trackHeights: any;
+                readonly trackHeightsWithResizeHandles: any;
+                readonly height: any;
+                readonly totalBp: number;
+                readonly maxBpPerPx: number;
+                readonly minBpPerPx: number;
+                readonly error: string | Error;
+                readonly maxOffset: number;
+                readonly minOffset: number;
+                readonly displayedRegionsTotalPx: number;
+                renderProps(): any;
+                searchScope(assemblyName: string): {
+                    assemblyName: string;
+                    includeAggregateIndexes: boolean;
+                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+                };
+                getTrack(id: string): any;
+                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
+                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
+                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
+            } & {
+                setShowCytobands(flag: boolean): void;
+                setWidth(newWidth: number): void;
+                setError(error: Error | undefined): void;
+                toggleHeader(): void;
+                toggleHeaderOverview(): void;
+                toggleNoTracksActive(): void;
+                toggleShowGridlines(): void;
+                scrollTo(offsetPx: number): number;
+                zoomTo(bpPerPx: number): number;
+                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
+                setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
+                setGetSequenceDialogOpen(open: boolean): void;
+                setNewView(bpPerPx: number, offsetPx: number): void;
+                horizontallyFlip(): void;
+                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
+                hideTrack(trackId: string): number;
+            } & {
+                moveTrack(movingId: string, targetId: string): void;
+                closeView(): void;
+                toggleTrack(trackId: string): void;
+                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                toggleCenterLine(): void;
+                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                activateTrackSelector(): import("@jbrowse/core/util").Widget;
+                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                afterDisplayedRegionsSet(cb: Function): void;
+                horizontalScroll(distance: number): number;
+                center(): void;
+                showAllRegions(): void;
+                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
+                setDraggingTrackId(idx?: string | undefined): void;
+                setScaleFactor(factor: number): void;
+                clearView(): void;
+                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
+            } & {
+                slide: (viewWidths: number) => void;
+            } & {
+                zoom: (targetBpPerPx: number) => void;
+            } & {
+                readonly canShowCytobands: boolean;
+                readonly showCytobands: boolean;
+                readonly anyCytobandsExist: boolean;
+                readonly cytobandOffset: number;
+            } & {
+                menuItems(): import("@jbrowse/core/ui").MenuItem[];
+            } & {
+                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+                readonly roundedDynamicBlocks: {
+                    start: number;
+                    end: number;
+                    regionNumber?: number | undefined;
+                    reversed?: boolean | undefined;
+                    refName: string;
+                    assemblyName: string;
+                    key: string;
+                    offsetPx: number;
+                    widthPx: number;
+                    variant?: string | undefined;
+                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                }[];
+                readonly visibleLocStrings: string;
+                readonly coarseVisibleLocStrings: string;
+            } & {
+                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
+                afterAttach(): void;
+            } & {
+                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
+                navToLocString(locString: string, optAssemblyName?: string | undefined): void;
+                navTo(query: import("./LinearGenomeView").NavLocation): void;
+                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
+            } & {
+                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                bpToPx({ refName, coord, regionNumber, }: {
+                    refName: string;
+                    coord: number;
+                    regionNumber?: number | undefined;
+                }): {
+                    index: number;
+                    offsetPx: number;
+                } | undefined;
+                centerAt(coord: number, refName: string, regionNumber: number): void;
+                pxToBp(px: number): {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                };
+                readonly centerLineInfo: {
+                    coord: number;
+                    index: number;
+                    refName: string;
+                    oob: boolean;
+                    assemblyName: string;
+                    offset: number;
+                    start: number;
+                    end: number;
+                    reversed: boolean;
+                } | undefined;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }) => JSX.Element;
     };
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;