@jbrowse/plugin-linear-genome-view 2.0.0 → 2.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearGenomeView/components/{VerticalGuides.d.ts → Gridlines.d.ts} +0 -0
- package/dist/LinearGenomeView/components/{VerticalGuides.js → Gridlines.js} +1 -1
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -0
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +13 -10
- package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
- package/dist/LinearGenomeView/components/RubberBand.js +0 -1
- package/dist/LinearGenomeView/components/RubberBand.js.map +1 -1
- package/dist/LinearGenomeView/components/SequenceDialog.js +1 -1
- package/dist/LinearGenomeView/components/SequenceDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.js +2 -2
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/dist/LinearGenomeView/index.d.ts +63 -76
- package/dist/LinearGenomeView/index.js +239 -365
- package/dist/LinearGenomeView/index.js.map +1 -1
- package/esm/LinearGenomeView/components/{VerticalGuides.d.ts → Gridlines.d.ts} +0 -0
- package/esm/LinearGenomeView/components/{VerticalGuides.js → Gridlines.js} +1 -1
- package/esm/LinearGenomeView/components/Gridlines.js.map +1 -0
- package/esm/LinearGenomeView/components/OverviewRubberBand.js +13 -10
- package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
- package/esm/LinearGenomeView/components/RubberBand.js +0 -1
- package/esm/LinearGenomeView/components/RubberBand.js.map +1 -1
- package/esm/LinearGenomeView/components/SequenceDialog.js +1 -1
- package/esm/LinearGenomeView/components/SequenceDialog.js.map +1 -1
- package/esm/LinearGenomeView/components/TracksContainer.js +2 -2
- package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/esm/LinearGenomeView/index.d.ts +63 -76
- package/esm/LinearGenomeView/index.js +243 -389
- package/esm/LinearGenomeView/index.js.map +1 -1
- package/package.json +3 -3
- package/src/LinearGenomeView/components/{VerticalGuides.tsx → Gridlines.tsx} +0 -0
- package/src/LinearGenomeView/components/OverviewRubberBand.tsx +14 -19
- package/src/LinearGenomeView/components/RubberBand.tsx +0 -1
- package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
- package/src/LinearGenomeView/components/TracksContainer.tsx +2 -2
- package/src/LinearGenomeView/index.test.ts +13 -36
- package/src/LinearGenomeView/index.tsx +360 -519
- package/dist/LinearGenomeView/components/VerticalGuides.js.map +0 -1
- package/esm/LinearGenomeView/components/VerticalGuides.js.map +0 -1
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@@ -0,0 +1 @@
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{"version":3,"file":"Gridlines.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Gridlines.tsx"],"names":[],"mappings":";;;;;AAAA,gDAAyB;AACzB,4DAIsC;AACtC,qCAA0C;AAC1C,yCAAqC;AAErC,kEAIiD;AAEjD,gCAAmC;AAInC,IAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,UAAA,KAAK,IAAI,OAAA,CAAC;IACvC,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;KACtB;IACD,uBAAuB,EAAE;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,OAAO,EAAE,MAAM;KAChB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;KACT;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS;KACzC;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO;KAClC;CACF,CAAC,EA1BsC,CA0BtC,CAAC,CAAA;AACH,IAAM,sBAAsB,GAAG,IAAA,qBAAQ,EAAC,UAAC,EAAyB;QAAvB,KAAK,WAAA;IACxC,IAAA,KAAkB,SAAS,EAAE,EAA3B,OAAO,aAAA,EAAE,EAAE,QAAgB,CAAA;IACnC,OAAO,CACL,8DACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,UAAC,KAAK,EAAE,KAAK;QACnC,IAAI,KAAK,YAAY,yBAAY,EAAE;YACjC,IAAM,KAAK,GAAG,IAAA,gBAAS,EAAC,KAAK,CAAC,KAAK,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAA;YAC9D,OAAO,CACL,8BAAC,oBAAqB,IAAC,GAAG,EAAE,UAAG,KAAK,CAAC,GAAG,cAAI,KAAK,CAAE,EAAE,KAAK,EAAE,KAAK,IAC9D,KAAK,CAAC,GAAG,CAAC,UAAA,IAAI;gBACb,IAAM,CAAC,GACL,CAAC,KAAK,CAAC,QAAQ;oBACb,CAAC,CAAC,KAAK,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI;oBACvB,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,GAAG,KAAK,CAAC,OAAO,CAAA;gBAC9C,OAAO,CACL,uCACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,EAAE,CACX,OAAO,CAAC,IAAI,EACZ,IAAI,CAAC,IAAI,KAAK,OAAO,IAAI,IAAI,CAAC,IAAI,KAAK,cAAc;wBACnD,CAAC,CAAC,OAAO,CAAC,SAAS;wBACnB,CAAC,CAAC,OAAO,CAAC,SAAS,CACtB,EACD,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAClB,CACH,CAAA;YACH,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,wBAAW,EAAE;YAChC,OAAO,8BAAC,mBAAoB,IAAC,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,EAAE,KAAK,CAAC,OAAO,GAAI,CAAA;SACtE;QACD,IAAI,KAAK,YAAY,oCAAuB,EAAE;YAC5C,OAAO,CACL,8BAAC,+BAAgC,IAC/B,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,KAAK,EAAE,KAAK,CAAC,OAAO,EACpB,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,SAAS,cAAc,CAAC,EAAyB;QAAvB,KAAK,WAAA;IACrB,IAAA,OAAO,GAAK,SAAS,EAAE,QAAhB,CAAgB;IAC/B,iEAAiE;IACjE,IAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,uCACE,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE;YACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC,CAAC,CAAC,CAAC,iBAAU,KAAK,CAAC,WAAW,MAAG,CAAC,CAAC,CAAC,SAAS;SACvE;QAED,uCACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE;gBACL,IAAI,EAAE,UAAU;gBAChB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;aACvC;YAED,8BAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}
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@@ -127,19 +127,22 @@ function OverviewRubberBand(_a) {
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}
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}
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function globalMouseUp() {
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currentX !== undefined) {
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// click and drag
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if (startX !== undefined && currentX !== undefined) {
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if (Math.abs(currentX - startX) > 3) {
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model.
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model.moveTo(overview.pxToBp(startX - cytobandOffset), overview.pxToBp(currentX - cytobandOffset));
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}
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}
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if (
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startX
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// just a click
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if (startX !== undefined && currentX === undefined) {
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var click = overview.pxToBp(startX - cytobandOffset);
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if (!click.refName) {
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(0, util_1.getSession)(model).notify('unknown position clicked');
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console.error('unknown position clicked', click);
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}
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else {
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model.centerAt(Math.round(click.coord), click.refName, click.index);
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}
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}
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setStartX(undefined);
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setCurrentX(undefined);
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+
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@@ -236,7 +236,7 @@ function SequenceDialog(_a) {
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});
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(0, file_saver_1.saveAs)(seqFastaFile, 'jbrowse_ref_seq.fa');
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}, disabled: loading || !!error, color: "primary", startIcon: react_1.default.createElement(GetApp_1.default, null) }, "Download FASTA"),
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-
react_1.default.createElement(material_1.Button, { onClick: handleClose,
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+
react_1.default.createElement(material_1.Button, { onClick: handleClose, variant: "contained" }, "Close"))));
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}
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exports.default = (0, mobx_react_1.observer)(SequenceDialog);
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//# sourceMappingURL=SequenceDialog.js.map
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@@ -1 +1 @@
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1
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-
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1
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+
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@@ -49,7 +49,7 @@ var normalize_wheel_1 = __importDefault(require("normalize-wheel"));
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var useStyles = (0, mui_1.makeStyles)()({
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@@ -178,7 +178,7 @@ function TracksContainer(_a) {
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return (react_1.default.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave },
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react_1.default.createElement(
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model.showGridlines ? react_1.default.createElement(Gridlines_1.default, { model: model }) : null,
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model.showCenterLine ? react_1.default.createElement(CenterLine_1.default, { model: model }) : null,
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react_1.default.createElement(RubberBand_1.default, { model: model, ControlComponent: react_1.default.createElement(ScaleBar_1.default, { model: model, style: { height: __1.SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
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-
{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,6CAA0D;AAC1D,qCAA0C;AAC1C,yCAAqC;AAErC,oEAA4C;AAE5C,wBAAiE;AACjE,4DAAqC;AACrC,wDAAiC;AACjC,
|
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1
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{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,6CAA0D;AAC1D,qCAA0C;AAC1C,yCAAqC;AAErC,oEAA4C;AAE5C,wBAAiE;AACjE,4DAAqC;AACrC,wDAAiC;AACjC,0DAAmC;AACnC,4DAAqC;AAErC,IAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,eAAe,EAAE;QACf,QAAQ,EAAE,UAAU;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,MAAM,EAAE;QACN,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAKF,SAAS,eAAe,CAAC,EAMxB;QALC,QAAQ,cAAA,EACR,KAAK,WAAA;IAKG,IAAA,OAAO,GAAK,SAAS,EAAE,QAAhB,CAAgB;IAC/B,2EAA2E;IAC3E,yBAAyB;IACzB,IAAM,KAAK,GAAG,IAAA,cAAM,EAAC,CAAC,CAAC,CAAA;IACvB,IAAM,SAAS,GAAG,IAAA,cAAM,EAAC,KAAK,CAAC,CAAA;IAC/B,IAAM,OAAO,GAAG,IAAA,cAAM,GAAS,CAAA;IAC/B,IAAM,GAAG,GAAG,IAAA,cAAM,EAAiB,IAAI,CAAC,CAAA;IACxC,IAAM,KAAK,GAAG,IAAA,cAAM,EAAS,CAAC,CAAC,CAAA;IAEzB,IAAA,KAAA,OAAoC,IAAA,gBAAQ,EAAC,KAAK,CAAC,IAAA,EAAlD,aAAa,QAAA,EAAE,gBAAgB,QAAmB,CAAA;IAEzD,IAAA,iBAAS,EAAC;QACR,IAAI,OAAO,GAAG,cAAO,CAAC,CAAA;QAEtB,SAAS,eAAe,CAAC,KAAiB;YACxC,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,IAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YAC3B,IAAM,QAAQ,GAAG,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YACtC,IAAI,QAAQ,EAAE;gBACZ,uEAAuE;gBACvE,8EAA8E;gBAC9E,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE;oBACtB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC;wBAC3B,KAAK,CAAC,gBAAgB,CAAC,CAAC,QAAQ,CAAC,CAAA;wBACjC,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;wBACzB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;oBAC/B,CAAC,CAAC,CAAA;iBACH;aACF;QACH,CAAC;QAED,SAAS,aAAa;YACpB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;YACjB,IAAI,aAAa,EAAE;gBACjB,gBAAgB,CAAC,KAAK,CAAC,CAAA;aACxB;QACH,CAAC;QAED,IAAI,aAAa,EAAE;YACjB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG;gBACR,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;SACF;QACD,OAAO,OAAO,CAAA;IAChB,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,EAAE,KAAK,CAAC,CAAC,CAAA;IAEjC,SAAS,SAAS,CAAC,KAAuB;QACxC,2DAA2D;QAC3D,IAAM,MAAM,GAAG,KAAK,CAAC,MAAqB,CAAA;QAC1C,IAAI,MAAM,CAAC,SAAS,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE;YAC9C,OAAM;SACP;QAED,qCAAqC;QACrC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;YACtB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;YAC7B,gBAAgB,CAAC,IAAI,CAAC,CAAA;SACvB;IACH,CAAC;IAED,yEAAyE;IACzE,wEAAwE;IACxE,SAAS,OAAO,CAAC,KAAuB;QACtC,KAAK,CAAC,cAAc,EAAE,CAAA;QACtB,gBAAgB,CAAC,KAAK,CAAC,CAAA;IACzB,CAAC;IAED,SAAS,UAAU,CAAC,KAAuB;QACzC,KAAK,CAAC,cAAc,EAAE,CAAA;IACxB,CAAC;IAED,IAAA,iBAAS,EAAC;QACR,IAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,8CAA8C;QAC9C,yCAAyC;QACzC,SAAS,OAAO,CAAC,SAAqB;YACpC,IAAM,KAAK,GAAG,IAAA,yBAAc,EAAC,SAAS,CAAC,CAAA;YACvC,IAAI,SAAS,CAAC,OAAO,KAAK,IAAI,EAAE;gBAC9B,SAAS,CAAC,cAAc,EAAE,CAAA;gBAC1B,KAAK,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,GAAG,GAAG,CAAA;gBACnC,KAAK,CAAC,cAAc,CAClB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CAChE,CAAA;gBACD,IAAI,OAAO,CAAC,OAAO,EAAE;oBACnB,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;iBAC9B;gBACD,OAAO,CAAC,OAAO,GAAG,UAAU,CAAC;oBAC3B,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAAA;oBACvB,KAAK,CAAC,MAAM,CACV,KAAK,CAAC,OAAO,GAAG,CAAC;wBACf,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC;wBACrC,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CACxC,CAAA;oBACD,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;gBACnB,CAAC,EAAE,GAAG,CAAC,CAAA;aACR;iBAAM;gBACL,gEAAgE;gBAChE,qEAAqE;gBACrE,8BAA8B;gBAC9B,IAAI,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAC,EAAE;oBACvD,SAAS,CAAC,cAAc,EAAE,CAAA;iBAC3B;gBACD,KAAK,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;gBAC7B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE;oBACtB,uEAAuE;oBACvE,8EAA8E;oBAC9E,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC;wBAC3B,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;wBACrC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;wBACjB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;oBAC3B,CAAC,CAAC,CAAA;iBACH;aACF;QACH,CAAC;QACD,IAAI,IAAI,EAAE;YACR,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;YACvC,OAAO;gBACL,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;YAC5C,CAAC,CAAA;SACF;QACD,OAAO,cAAO,CAAC,CAAA;IACjB,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,OAAO,CACL,uCACE,GAAG,EAAE,GAAG,iBACI,gBAAgB,EAC5B,SAAS,EAAE,OAAO,CAAC,eAAe,EAClC,WAAW,EAAE,SAAS,EACtB,SAAS,EAAE,OAAO,EAClB,YAAY,EAAE,UAAU;QAEvB,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACxD,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,8BAAC,oBAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAE3D,8BAAC,oBAAU,IACT,KAAK,EAAE,KAAK,EACZ,gBAAgB,EACd,8BAAC,kBAAQ,IACP,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,EAAE,MAAM,EAAE,oBAAgB,EAAE,SAAS,EAAE,YAAY,EAAE,GAC5D,GAEJ;QACD,QAAQ,CACL,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,eAAe,CAAC,CAAA"}
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|
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|
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|
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|
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|
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|
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}[];
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|
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|
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* displayed region in the linear genome view
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*
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*/
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moveTo(start: BpOffset, end: BpOffset): void;
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168
|
horizontalScroll(distance: number): number;
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/**
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|
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* of the displayed regions, does nothing
|
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|
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|
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|
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|
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*/
|
|
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|
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centerAt(bp: number, refName: string, regionIndex: number): void;
|
|
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169
|
center(): void;
|
|
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170
|
showAllRegions(): void;
|
|
244
171
|
showAllRegionsInAssembly(assemblyName?: string): void;
|
|
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|
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|
afterAttach(): void;
|
|
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207
|
} & {
|
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|
exportSvg(opts?: ExportSvgOptions): Promise<void>;
|
|
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|
+
/**
|
|
210
|
+
* offset is the base-pair-offset in the displayed region, index is the index of the
|
|
211
|
+
* displayed region in the linear genome view
|
|
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|
+
*
|
|
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|
+
* @param start - object as `{start, end, offset, index}`
|
|
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|
+
* @param end - object as `{start, end, offset, index}`
|
|
215
|
+
*/
|
|
216
|
+
moveTo(start?: BpOffset, end?: BpOffset): void;
|
|
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|
+
navToLocString(locString: string, optAssemblyName?: string): void;
|
|
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|
+
/**
|
|
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|
+
* Navigate to a location based on its refName and optionally start, end,
|
|
220
|
+
* and assemblyName. Can handle if there are multiple displayedRegions
|
|
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|
+
* from same refName. Only navigates to a location if it is entirely
|
|
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|
+
* within a displayedRegion. Navigates to the first matching location
|
|
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|
+
* encountered.
|
|
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|
+
*
|
|
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|
+
* Throws an error if navigation was unsuccessful
|
|
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|
+
*
|
|
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|
+
* @param location - a proposed location to navigate to
|
|
228
|
+
*/
|
|
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|
+
navTo(query: NavLocation): void;
|
|
230
|
+
navToMultiple(locations: NavLocation[]): void;
|
|
282
231
|
} & {
|
|
283
232
|
rubberBandMenuItems(): MenuItem[];
|
|
233
|
+
bpToPx({ refName, coord, regionNumber, }: {
|
|
234
|
+
refName: string;
|
|
235
|
+
coord: number;
|
|
236
|
+
regionNumber?: number | undefined;
|
|
237
|
+
}): {
|
|
238
|
+
index: number;
|
|
239
|
+
offsetPx: number;
|
|
240
|
+
} | undefined;
|
|
241
|
+
/**
|
|
242
|
+
* scrolls the view to center on the given bp. if that is not in any
|
|
243
|
+
* of the displayed regions, does nothing
|
|
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|
+
* @param coord - basepair at which you want to center the view
|
|
245
|
+
* @param refName - refName of the displayedRegion you are centering at
|
|
246
|
+
* @param regionNumber - index of the displayedRegion
|
|
247
|
+
*/
|
|
248
|
+
centerAt(coord: number, refName: string, regionNumber: number): void;
|
|
249
|
+
pxToBp(px: number): {
|
|
250
|
+
coord: number;
|
|
251
|
+
index: number;
|
|
252
|
+
refName: string;
|
|
253
|
+
oob: boolean;
|
|
254
|
+
assemblyName: string;
|
|
255
|
+
offset: number;
|
|
256
|
+
start: number;
|
|
257
|
+
end: number;
|
|
258
|
+
reversed: boolean;
|
|
259
|
+
};
|
|
260
|
+
readonly centerLineInfo: {
|
|
261
|
+
coord: number;
|
|
262
|
+
index: number;
|
|
263
|
+
refName: string;
|
|
264
|
+
oob: boolean;
|
|
265
|
+
assemblyName: string;
|
|
266
|
+
offset: number;
|
|
267
|
+
start: number;
|
|
268
|
+
end: number;
|
|
269
|
+
reversed: boolean;
|
|
270
|
+
} | undefined;
|
|
284
271
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
285
272
|
export { renderToSvg, RefNameAutocomplete, SearchBox };
|
|
286
273
|
export declare type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;
|