@jbrowse/plugin-linear-genome-view 1.7.9 → 1.7.10

package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts

@@ -1,10 +1,6 @@
 import React from 'react';
+import Tooltip from './Tooltip';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
-declare const Tooltip: ({ model, clientMouseCoord, }: {
-    model: BaseLinearDisplayModel;
-    clientMouseCoord: Coord;
-}) => JSX.Element | null;
-declare type Coord = [number, number];
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;

package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js

@@ -7,11 +7,13 @@ var _typeof = require("@babel/runtime/helpers/typeof");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = exports.Tooltip = void 0;
-
-var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+Object.defineProperty(exports, "Tooltip", {
+  enumerable: true,
+  get: function get() {
+    return _Tooltip.default;
+  }
+});
+exports.default = void 0;
 
 var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
@@ -25,7 +27,7 @@ var _configuration = require("@jbrowse/core/configuration");
 
 var _ui = require("@jbrowse/core/ui");
 
-var _reactPopper = require("react-popper");
+var _Tooltip = _interopRequireDefault(require("./Tooltip"));
 
 var _LinearBlocks = _interopRequireDefault(require("./LinearBlocks"));
 
@@ -33,130 +35,40 @@ function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "functio
 
 function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function round(value) {
-  return Math.round(value * 1e5) / 1e5;
-}
-
-var useStyles = (0, _core.makeStyles)(function (theme) {
-  return {
-    display: {
-      position: 'relative',
-      whiteSpace: 'nowrap',
-      textAlign: 'left',
-      width: '100%',
-      minHeight: '100%'
-    },
-    // these styles come from
-    // https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
-    tooltip: {
-      pointerEvents: 'none',
-      backgroundColor: (0, _core.alpha)(theme.palette.grey[700], 0.9),
-      borderRadius: theme.shape.borderRadius,
-      color: theme.palette.common.white,
-      fontFamily: theme.typography.fontFamily,
-      padding: '4px 8px',
-      fontSize: theme.typography.pxToRem(12),
-      lineHeight: "".concat(round(14 / 10), "em"),
-      maxWidth: 300,
-      wordWrap: 'break-word'
-    }
-  };
-});
-
-var TooltipContents = /*#__PURE__*/_react.default.forwardRef(function (_ref, ref) {
-  var message = _ref.message;
-  return /*#__PURE__*/_react.default.createElement("div", {
-    ref: ref
-  }, message);
+// locals
+var useStyles = (0, _core.makeStyles)({
+  display: {
+    position: 'relative',
+    whiteSpace: 'nowrap',
+    textAlign: 'left',
+    width: '100%',
+    minHeight: '100%'
+  }
 });
-
-var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
-  var model = _ref2.model,
-      clientMouseCoord = _ref2.clientMouseCoord;
+var BaseLinearDisplay = (0, _mobxReact.observer)(function (props) {
   var classes = useStyles();
-  var featureUnderMouse = model.featureUnderMouse;
+  var theme = (0, _core.useTheme)();
+  var ref = (0, _react.useRef)(null);
 
-  var _useState = (0, _react.useState)(0),
+  var _useState = (0, _react.useState)(),
       _useState2 = (0, _slicedToArray2.default)(_useState, 2),
-      width = _useState2[0],
-      setWidth = _useState2[1];
+      clientRect = _useState2[0],
+      setClientRect = _useState2[1];
 
-  var _useState3 = (0, _react.useState)(null),
+  var _useState3 = (0, _react.useState)([0, 0]),
       _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
-      popperElt = _useState4[0],
-      setPopperElt = _useState4[1]; // must be memoized a la https://github.com/popperjs/react-popper/issues/391
-
-
-  var virtElement = (0, _react.useMemo)(function () {
-    return {
-      getBoundingClientRect: function getBoundingClientRect() {
-        var x = clientMouseCoord[0] + width / 2 + 20;
-        var y = clientMouseCoord[1];
-        return {
-          top: y,
-          left: x,
-          bottom: y,
-          right: x,
-          width: 0,
-          height: 0,
-          x: x,
-          y: y,
-          toJSON: function toJSON() {}
-        };
-      }
-    };
-  }, [clientMouseCoord, width]);
-
-  var _usePopper = (0, _reactPopper.usePopper)(virtElement, popperElt),
-      styles = _usePopper.styles,
-      attributes = _usePopper.attributes;
-
-  var contents = featureUnderMouse ? (0, _configuration.getConf)(model, 'mouseover', {
-    feature: featureUnderMouse
-  }) : undefined;
-  return featureUnderMouse && contents ? /*#__PURE__*/_react.default.createElement(_core.Portal, null, /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
-    ref: setPopperElt,
-    className: classes.tooltip // zIndex needed to go over widget drawer
-    ,
-    style: _objectSpread(_objectSpread({}, styles.popper), {}, {
-      zIndex: 100000
-    })
-  }, attributes.popper), /*#__PURE__*/_react.default.createElement(TooltipContents, {
-    ref: function ref(elt) {
-      return setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
-    },
-    message: contents
-  }))) : null;
-});
-exports.Tooltip = Tooltip;
-var BaseLinearDisplay = (0, _mobxReact.observer)(function (props) {
-  var classes = useStyles();
-  var theme = (0, _core.useTheme)();
-  var ref = (0, _react.useRef)(null);
+      offsetMouseCoord = _useState4[0],
+      setOffsetMouseCoord = _useState4[1];
 
-  var _useState5 = (0, _react.useState)(),
+  var _useState5 = (0, _react.useState)([0, 0]),
       _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
-      clientRect = _useState6[0],
-      setClientRect = _useState6[1];
+      clientMouseCoord = _useState6[0],
+      setClientMouseCoord = _useState6[1];
 
-  var _useState7 = (0, _react.useState)([0, 0]),
+  var _useState7 = (0, _react.useState)(),
       _useState8 = (0, _slicedToArray2.default)(_useState7, 2),
-      offsetMouseCoord = _useState8[0],
-      setOffsetMouseCoord = _useState8[1];
-
-  var _useState9 = (0, _react.useState)([0, 0]),
-      _useState10 = (0, _slicedToArray2.default)(_useState9, 2),
-      clientMouseCoord = _useState10[0],
-      setClientMouseCoord = _useState10[1];
-
-  var _useState11 = (0, _react.useState)(),
-      _useState12 = (0, _slicedToArray2.default)(_useState11, 2),
-      contextCoord = _useState12[0],
-      setContextCoord = _useState12[1];
+      contextCoord = _useState8[0],
+      setContextCoord = _useState8[1];
 
   var model = props.model,
       children = props.children;

package/dist/BaseLinearDisplay/components/Tooltip.d.ts

@@ -0,0 +1,8 @@
+/// <reference types="react" />
+import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
+declare type Coord = [number, number];
+declare const Tooltip: ({ model, clientMouseCoord, }: {
+    model: BaseLinearDisplayModel;
+    clientMouseCoord: Coord;
+}) => JSX.Element | null;
+export default Tooltip;

package/dist/BaseLinearDisplay/components/Tooltip.js

@@ -0,0 +1,125 @@
+"use strict";
+
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+
+var _typeof = require("@babel/runtime/helpers/typeof");
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.default = void 0;
+
+var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
+
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
+
+var _react = _interopRequireWildcard(require("react"));
+
+var _configuration = require("@jbrowse/core/configuration");
+
+var _mobxReact = require("mobx-react");
+
+var _core = require("@material-ui/core");
+
+var _reactPopper = require("react-popper");
+
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
+function round(value) {
+  return Math.round(value * 1e5) / 1e5;
+}
+
+var useStyles = (0, _core.makeStyles)(function (theme) {
+  return {
+    // these styles come from
+    // https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
+    tooltip: {
+      pointerEvents: 'none',
+      backgroundColor: (0, _core.alpha)(theme.palette.grey[700], 0.9),
+      borderRadius: theme.shape.borderRadius,
+      color: theme.palette.common.white,
+      fontFamily: theme.typography.fontFamily,
+      padding: '4px 8px',
+      fontSize: theme.typography.pxToRem(12),
+      lineHeight: "".concat(round(14 / 10), "em"),
+      maxWidth: 300,
+      wordWrap: 'break-word'
+    }
+  };
+});
+
+var TooltipContents = /*#__PURE__*/_react.default.forwardRef(function (_ref, ref) {
+  var message = _ref.message;
+  return /*#__PURE__*/_react.default.createElement("div", {
+    ref: ref
+  }, message);
+});
+
+var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
+  var model = _ref2.model,
+      clientMouseCoord = _ref2.clientMouseCoord;
+  var classes = useStyles();
+  var featureUnderMouse = model.featureUnderMouse;
+
+  var _useState = (0, _react.useState)(0),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
+      width = _useState2[0],
+      setWidth = _useState2[1];
+
+  var _useState3 = (0, _react.useState)(null),
+      _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
+      popperElt = _useState4[0],
+      setPopperElt = _useState4[1]; // must be memoized a la https://github.com/popperjs/react-popper/issues/391
+
+
+  var virtElement = (0, _react.useMemo)(function () {
+    return {
+      getBoundingClientRect: function getBoundingClientRect() {
+        var x = clientMouseCoord[0] + width / 2 + 20;
+        var y = clientMouseCoord[1];
+        return {
+          top: y,
+          left: x,
+          bottom: y,
+          right: x,
+          width: 0,
+          height: 0,
+          x: x,
+          y: y,
+          toJSON: function toJSON() {}
+        };
+      }
+    };
+  }, [clientMouseCoord, width]);
+
+  var _usePopper = (0, _reactPopper.usePopper)(virtElement, popperElt),
+      styles = _usePopper.styles,
+      attributes = _usePopper.attributes;
+
+  var contents = featureUnderMouse ? (0, _configuration.getConf)(model, 'mouseover', {
+    feature: featureUnderMouse
+  }) : undefined;
+  return featureUnderMouse && contents ? /*#__PURE__*/_react.default.createElement(_core.Portal, null, /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
+    ref: setPopperElt,
+    className: classes.tooltip // zIndex needed to go over widget drawer
+    ,
+    style: _objectSpread(_objectSpread({}, styles.popper), {}, {
+      zIndex: 100000
+    })
+  }, attributes.popper), /*#__PURE__*/_react.default.createElement(TooltipContents, {
+    ref: function ref(elt) {
+      return setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
+    },
+    message: contents
+  }))) : null;
+});
+var _default = Tooltip;
+exports.default = _default;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js

@@ -371,8 +371,9 @@ var BaseLinearDisplay = _mobxStateTree.types.compose('BaseLinearDisplay', _model
 
       if ((0, _util.isSessionModelWithWidgets)(session)) {
         var featureWidget = session.addWidget('BaseFeatureWidget', 'baseFeature', {
-          featureData: feature.toJSON(),
-          view: (0, _util.getContainingView)(self)
+          view: (0, _util.getContainingView)(self),
+          track: (0, _util.getContainingTrack)(self),
+          featureData: feature.toJSON()
         });
         session.showWidget(featureWidget);
       }

package/dist/LinearGenomeView/components/Header.js

@@ -13,6 +13,8 @@ var _mobxReact = require("mobx-react");
 
 var _core = require("@material-ui/core");
 
+var _util = require("@jbrowse/core/util");
+
 var _SearchBox = _interopRequireDefault(require("./SearchBox"));
 
 var _Icons = require("@jbrowse/core/ui/Icons");
@@ -97,12 +99,13 @@ function PanControls(_ref2) {
 var RegionWidth = (0, _mobxReact.observer)(function (_ref3) {
   var model = _ref3.model;
   var classes = useStyles();
-  var coarseTotalBp = model.coarseTotalBp;
+  var coarseTotalBp = model.coarseTotalBp,
+      bpPerPx = model.bpPerPx;
   return /*#__PURE__*/_react.default.createElement(_core.Typography, {
     variant: "body2",
     color: "textSecondary",
     className: classes.bp
-  }, Math.round(coarseTotalBp).toLocaleString('en-US'), " bp");
+  }, (0, _util.getTickDisplayStr2)(coarseTotalBp, bpPerPx));
 });
 
 var Controls = function Controls(_ref4) {

package/dist/LinearGenomeView/components/HelpDialog.js

@@ -34,12 +34,11 @@ function HelpDialog(_ref) {
     maxWidth: "xl",
     onClose: handleClose
   }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Using the search box", handleClose ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
-    "data-testid": "close-resultsDialog",
     className: classes.closeButton,
     onClick: function onClick() {
-      handleClose();
+      return handleClose();
     }
-  }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement("h3", null, "Searching"), /*#__PURE__*/_react.default.createElement("ul", null, /*#__PURE__*/_react.default.createElement("li", null, "Jump to a feature or reference sequence by typing its name in the location box and pressing Enter."), /*#__PURE__*/_react.default.createElement("li", null, "Jump to a specific region by typing the region into the location box as: ", /*#__PURE__*/_react.default.createElement("code", null, "ref:start..end"), " or ", /*#__PURE__*/_react.default.createElement("code", null, "ref:start-end"), ". Commas are allowed in the start and end coordinates. A space-separated list of locstrings can be used to open up multiple chromosomes at a time")), /*#__PURE__*/_react.default.createElement("h3", null, "Example Searches"), /*#__PURE__*/_react.default.createElement("ul", null, /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "BRCA"), " - searches for the feature named BRCA"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr4"), " - jumps to chromosome 4"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr4:79,500,000..80,000,000"), " - jumps the region on chromosome 4 between 79.5Mb and 80Mb."), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1:1-100 chr2:1-100"), " - create a split view of chr1:1-100 and chr2:1-100"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1 chr2 chr3"), " - open up multiple chromosomes at once"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1:1-100[rev] chr2:1-100"), " - open up the first region in the horizontally flipped orientation"))), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement("h3", null, "Searching"), /*#__PURE__*/_react.default.createElement("ul", null, /*#__PURE__*/_react.default.createElement("li", null, "Jump to a feature or reference sequence by typing its name in the location box and pressing Enter."), /*#__PURE__*/_react.default.createElement("li", null, "Jump to a specific region by typing the region into the location box as: ", /*#__PURE__*/_react.default.createElement("code", null, "ref:start..end"), " or ", /*#__PURE__*/_react.default.createElement("code", null, "ref:start-end"), ". Commas are allowed in the start and end coordinates. A space-separated list of locstrings can be used to open up multiple chromosomes at a time")), /*#__PURE__*/_react.default.createElement("h3", null, "Example Searches"), /*#__PURE__*/_react.default.createElement("ul", null, /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "BRCA"), " - searches for the feature named BRCA"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr4"), " - jumps to chromosome 4"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr4:79,500,000..80,000,000"), " - jumps the region on chromosome 4 between 79.5Mb and 80Mb."), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1:1-100 chr2:1-100"), " - create a split view of chr1:1-100 and chr2:1-100"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1 chr2 chr3"), " - open up multiple chromosomes at once"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1:1-100[rev] chr2:1-100"), " - open up the first region in the horizontally flipped orientation"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1 100 200"), " - use whitespace separated refname, start, end"))), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
     onClick: function onClick() {
       return handleClose();
     },

package/dist/LinearGenomeView/components/LinearGenomeView.js

@@ -109,7 +109,7 @@ var LinearGenomeView = (0, _mobxReact.observer)(function (_ref) {
   }, !tracks.length ? /*#__PURE__*/_react.default.createElement(_core.Paper, {
     variant: "outlined",
     className: classes.note
-  }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No tracks active."), /*#__PURE__*/_react.default.createElement(_core.Button, {
+  }, !model.hideNoTracksActive ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No tracks active."), /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "primary",
     onClick: model.activateTrackSelector,
@@ -117,7 +117,11 @@ var LinearGenomeView = (0, _mobxReact.observer)(function (_ref) {
       zIndex: 1000
     },
     startIcon: /*#__PURE__*/_react.default.createElement(_Icons.TrackSelector, null)
-  }, "Open track selector")) : tracks.map(function (track) {
+  }, "Open track selector")) : /*#__PURE__*/_react.default.createElement("div", {
+    style: {
+      height: '48px'
+    }
+  })) : tracks.map(function (track) {
     return /*#__PURE__*/_react.default.createElement(_TrackContainer.default, {
       key: track.id,
       model: model,

package/dist/LinearGenomeView/components/LinearGenomeView.test.js

@@ -129,7 +129,7 @@ describe('<LinearGenomeView />', function () {
 
           case 9:
             _context2.next = 11;
-            return findByText('100 bp');
+            return findByText('100bp');
 
           case 11:
             expect(container.firstChild).toMatchSnapshot();
@@ -215,7 +215,7 @@ describe('<LinearGenomeView />', function () {
 
           case 10:
             _context3.next = 12;
-            return findByText('798 bp');
+            return findByText('798bp');
 
           case 12:
             _context3.next = 14;

package/dist/LinearGenomeView/components/OverviewScaleBar.js

@@ -66,7 +66,6 @@ var useStyles = (0, _core.makeStyles)(function (theme) {
     },
     scaleBarLabel: {
       height: _.HEADER_OVERVIEW_HEIGHT,
-      width: 1,
       position: 'absolute',
       display: 'flex',
       justifyContent: 'center',
@@ -244,6 +243,7 @@ var OverviewBox = (0, _mobxReact.observer)(function (_ref5) {
       overview = _ref5.overview;
   var classes = useStyles();
   var cytobandOffset = model.cytobandOffset,
+      bpPerPx = model.bpPerPx,
       showCytobands = model.showCytobands;
   var start = block.start,
       end = block.end,
@@ -289,7 +289,7 @@ var OverviewBox = (0, _mobxReact.observer)(function (_ref5) {
         pointerEvents: 'none',
         color: refNameColor
       }
-    }, tickLabel.toLocaleString('en-US'));
+    }, (0, _util.getTickDisplayStr)(tickLabel, bpPerPx));
   }) : null, showCytobands ? /*#__PURE__*/_react.default.createElement("svg", {
     style: {
       width: '100%'

package/dist/LinearGenomeView/components/ScaleBar.d.ts

@@ -21,6 +21,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
         hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
         trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
         showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
@@ -52,6 +53,7 @@ declare const _default: React.ForwardRefExoticComponent<{
     } & {
         readonly width: number;
         readonly interRegionPaddingWidth: number;
+        readonly assemblyNames: string[];
     } & {
         readonly assemblyErrors: string;
         readonly assembliesInitialized: boolean;
@@ -71,7 +73,6 @@ declare const _default: React.ForwardRefExoticComponent<{
         readonly minOffset: number;
         readonly displayedRegionsTotalPx: number;
         renderProps(): any;
-        readonly assemblyNames: string[];
         searchScope(assemblyName: string): {
             assemblyName: string;
             includeAggregateIndexes: boolean;
@@ -117,6 +118,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         setError(error: Error | undefined): void;
         toggleHeader(): void;
         toggleHeaderOverview(): void;
+        toggleNoTracksActive(): void;
         scrollTo(offsetPx: number): number;
         zoomTo(bpPerPx: number): number;
         setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
@@ -218,6 +220,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
         hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
         trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
         showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
@@ -249,6 +252,7 @@ declare const _default: React.ForwardRefExoticComponent<{
     } & {
         readonly width: number;
         readonly interRegionPaddingWidth: number;
+        readonly assemblyNames: string[];
     } & {
         readonly assemblyErrors: string;
         readonly assembliesInitialized: boolean;
@@ -268,7 +272,6 @@ declare const _default: React.ForwardRefExoticComponent<{
         readonly minOffset: number;
         readonly displayedRegionsTotalPx: number;
         renderProps(): any;
-        readonly assemblyNames: string[];
         searchScope(assemblyName: string): {
             assemblyName: string;
             includeAggregateIndexes: boolean;
@@ -314,6 +317,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         setError(error: Error | undefined): void;
         toggleHeader(): void;
         toggleHeaderOverview(): void;
+        toggleNoTracksActive(): void;
         scrollTo(offsetPx: number): number;
         zoomTo(bpPerPx: number): number;
         setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;

package/dist/LinearGenomeView/components/ScaleBar.js

@@ -27,6 +27,8 @@ var _Block = require("../../BaseLinearDisplay/components/Block");
 
 var _util = require("../util");
 
+var _util2 = require("@jbrowse/core/util");
+
 var _excluded = ["model", "style", "className"];
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
@@ -100,16 +102,19 @@ var RenderedRefNameLabels = (0, _mobxReact.observer)(function (_ref) {
 var RenderedScaleBarLabels = (0, _mobxReact.observer)(function (_ref2) {
   var model = _ref2.model;
   var classes = useStyles();
+  var bpPerPx = model.bpPerPx;
   return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, model.staticBlocks.map(function (block, index) {
     if (block instanceof _blockTypes.ContentBlock) {
-      var ticks = (0, _util.makeTicks)(block.start, block.end, model.bpPerPx, true, false);
+      var start = block.start,
+          end = block.end;
+      var ticks = (0, _util.makeTicks)(start, end, bpPerPx, true, false);
       return /*#__PURE__*/_react.default.createElement(_Block.ContentBlock, {
         key: "".concat(block.key, "-").concat(index),
         block: block
       }, ticks.map(function (tick) {
         if (tick.type === 'major') {
           var x = (block.reversed ? block.end - tick.base : tick.base - block.start) / model.bpPerPx;
-          var baseNumber = (tick.base + 1).toLocaleString('en-US');
+          var baseNumber = tick.base + 1;
           return /*#__PURE__*/_react.default.createElement("div", {
             key: tick.base,
             className: classes.tick,
@@ -118,7 +123,7 @@ var RenderedScaleBarLabels = (0, _mobxReact.observer)(function (_ref2) {
             }
           }, baseNumber ? /*#__PURE__*/_react.default.createElement(_core.Typography, {
             className: classes.majorTickLabel
-          }, baseNumber) : null);
+          }, (0, _util2.getTickDisplayStr)(baseNumber, bpPerPx)) : null);
         }
 
         return null;