@jbrowse/plugin-linear-genome-view 1.7.8 → 1.7.11

package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts

@@ -1,10 +1,6 @@
 import React from 'react';
+import Tooltip from './Tooltip';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
-declare const Tooltip: ({ model, clientMouseCoord, }: {
-    model: BaseLinearDisplayModel;
-    clientMouseCoord: Coord;
-}) => JSX.Element | null;
-declare type Coord = [number, number];
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;

package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js

@@ -7,11 +7,13 @@ var _typeof = require("@babel/runtime/helpers/typeof");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = exports.Tooltip = void 0;
-
-var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+Object.defineProperty(exports, "Tooltip", {
+  enumerable: true,
+  get: function get() {
+    return _Tooltip.default;
+  }
+});
+exports.default = void 0;
 
 var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
@@ -25,7 +27,7 @@ var _configuration = require("@jbrowse/core/configuration");
 
 var _ui = require("@jbrowse/core/ui");
 
-var _reactPopper = require("react-popper");
+var _Tooltip = _interopRequireDefault(require("./Tooltip"));
 
 var _LinearBlocks = _interopRequireDefault(require("./LinearBlocks"));
 
@@ -33,130 +35,40 @@ function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "functio
 
 function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function round(value) {
-  return Math.round(value * 1e5) / 1e5;
-}
-
-var useStyles = (0, _core.makeStyles)(function (theme) {
-  return {
-    display: {
-      position: 'relative',
-      whiteSpace: 'nowrap',
-      textAlign: 'left',
-      width: '100%',
-      minHeight: '100%'
-    },
-    // these styles come from
-    // https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
-    tooltip: {
-      pointerEvents: 'none',
-      backgroundColor: (0, _core.alpha)(theme.palette.grey[700], 0.9),
-      borderRadius: theme.shape.borderRadius,
-      color: theme.palette.common.white,
-      fontFamily: theme.typography.fontFamily,
-      padding: '4px 8px',
-      fontSize: theme.typography.pxToRem(12),
-      lineHeight: "".concat(round(14 / 10), "em"),
-      maxWidth: 300,
-      wordWrap: 'break-word'
-    }
-  };
-});
-
-var TooltipContents = /*#__PURE__*/_react.default.forwardRef(function (_ref, ref) {
-  var message = _ref.message;
-  return /*#__PURE__*/_react.default.createElement("div", {
-    ref: ref
-  }, message);
+// locals
+var useStyles = (0, _core.makeStyles)({
+  display: {
+    position: 'relative',
+    whiteSpace: 'nowrap',
+    textAlign: 'left',
+    width: '100%',
+    minHeight: '100%'
+  }
 });
-
-var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
-  var model = _ref2.model,
-      clientMouseCoord = _ref2.clientMouseCoord;
+var BaseLinearDisplay = (0, _mobxReact.observer)(function (props) {
   var classes = useStyles();
-  var featureUnderMouse = model.featureUnderMouse;
+  var theme = (0, _core.useTheme)();
+  var ref = (0, _react.useRef)(null);
 
-  var _useState = (0, _react.useState)(0),
+  var _useState = (0, _react.useState)(),
       _useState2 = (0, _slicedToArray2.default)(_useState, 2),
-      width = _useState2[0],
-      setWidth = _useState2[1];
+      clientRect = _useState2[0],
+      setClientRect = _useState2[1];
 
-  var _useState3 = (0, _react.useState)(null),
+  var _useState3 = (0, _react.useState)([0, 0]),
       _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
-      popperElt = _useState4[0],
-      setPopperElt = _useState4[1]; // must be memoized a la https://github.com/popperjs/react-popper/issues/391
-
-
-  var virtElement = (0, _react.useMemo)(function () {
-    return {
-      getBoundingClientRect: function getBoundingClientRect() {
-        var x = clientMouseCoord[0] + width / 2 + 20;
-        var y = clientMouseCoord[1];
-        return {
-          top: y,
-          left: x,
-          bottom: y,
-          right: x,
-          width: 0,
-          height: 0,
-          x: x,
-          y: y,
-          toJSON: function toJSON() {}
-        };
-      }
-    };
-  }, [clientMouseCoord, width]);
-
-  var _usePopper = (0, _reactPopper.usePopper)(virtElement, popperElt),
-      styles = _usePopper.styles,
-      attributes = _usePopper.attributes;
-
-  var contents = featureUnderMouse ? (0, _configuration.getConf)(model, 'mouseover', {
-    feature: featureUnderMouse
-  }) : undefined;
-  return featureUnderMouse && contents ? /*#__PURE__*/_react.default.createElement(_core.Portal, null, /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
-    ref: setPopperElt,
-    className: classes.tooltip // zIndex needed to go over widget drawer
-    ,
-    style: _objectSpread(_objectSpread({}, styles.popper), {}, {
-      zIndex: 100000
-    })
-  }, attributes.popper), /*#__PURE__*/_react.default.createElement(TooltipContents, {
-    ref: function ref(elt) {
-      return setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
-    },
-    message: contents
-  }))) : null;
-});
-exports.Tooltip = Tooltip;
-var BaseLinearDisplay = (0, _mobxReact.observer)(function (props) {
-  var classes = useStyles();
-  var theme = (0, _core.useTheme)();
-  var ref = (0, _react.useRef)(null);
+      offsetMouseCoord = _useState4[0],
+      setOffsetMouseCoord = _useState4[1];
 
-  var _useState5 = (0, _react.useState)(),
+  var _useState5 = (0, _react.useState)([0, 0]),
       _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
-      clientRect = _useState6[0],
-      setClientRect = _useState6[1];
+      clientMouseCoord = _useState6[0],
+      setClientMouseCoord = _useState6[1];
 
-  var _useState7 = (0, _react.useState)([0, 0]),
+  var _useState7 = (0, _react.useState)(),
       _useState8 = (0, _slicedToArray2.default)(_useState7, 2),
-      offsetMouseCoord = _useState8[0],
-      setOffsetMouseCoord = _useState8[1];
-
-  var _useState9 = (0, _react.useState)([0, 0]),
-      _useState10 = (0, _slicedToArray2.default)(_useState9, 2),
-      clientMouseCoord = _useState10[0],
-      setClientMouseCoord = _useState10[1];
-
-  var _useState11 = (0, _react.useState)(),
-      _useState12 = (0, _slicedToArray2.default)(_useState11, 2),
-      contextCoord = _useState12[0],
-      setContextCoord = _useState12[1];
+      contextCoord = _useState8[0],
+      setContextCoord = _useState8[1];
 
   var model = props.model,
       children = props.children;

package/dist/BaseLinearDisplay/components/Tooltip.d.ts

@@ -0,0 +1,8 @@
+/// <reference types="react" />
+import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
+declare type Coord = [number, number];
+declare const Tooltip: ({ model, clientMouseCoord, }: {
+    model: BaseLinearDisplayModel;
+    clientMouseCoord: Coord;
+}) => JSX.Element | null;
+export default Tooltip;

package/dist/BaseLinearDisplay/components/Tooltip.js

@@ -0,0 +1,125 @@
+"use strict";
+
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+
+var _typeof = require("@babel/runtime/helpers/typeof");
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.default = void 0;
+
+var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
+
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
+
+var _react = _interopRequireWildcard(require("react"));
+
+var _configuration = require("@jbrowse/core/configuration");
+
+var _mobxReact = require("mobx-react");
+
+var _core = require("@material-ui/core");
+
+var _reactPopper = require("react-popper");
+
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
+function round(value) {
+  return Math.round(value * 1e5) / 1e5;
+}
+
+var useStyles = (0, _core.makeStyles)(function (theme) {
+  return {
+    // these styles come from
+    // https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
+    tooltip: {
+      pointerEvents: 'none',
+      backgroundColor: (0, _core.alpha)(theme.palette.grey[700], 0.9),
+      borderRadius: theme.shape.borderRadius,
+      color: theme.palette.common.white,
+      fontFamily: theme.typography.fontFamily,
+      padding: '4px 8px',
+      fontSize: theme.typography.pxToRem(12),
+      lineHeight: "".concat(round(14 / 10), "em"),
+      maxWidth: 300,
+      wordWrap: 'break-word'
+    }
+  };
+});
+
+var TooltipContents = /*#__PURE__*/_react.default.forwardRef(function (_ref, ref) {
+  var message = _ref.message;
+  return /*#__PURE__*/_react.default.createElement("div", {
+    ref: ref
+  }, message);
+});
+
+var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
+  var model = _ref2.model,
+      clientMouseCoord = _ref2.clientMouseCoord;
+  var classes = useStyles();
+  var featureUnderMouse = model.featureUnderMouse;
+
+  var _useState = (0, _react.useState)(0),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
+      width = _useState2[0],
+      setWidth = _useState2[1];
+
+  var _useState3 = (0, _react.useState)(null),
+      _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
+      popperElt = _useState4[0],
+      setPopperElt = _useState4[1]; // must be memoized a la https://github.com/popperjs/react-popper/issues/391
+
+
+  var virtElement = (0, _react.useMemo)(function () {
+    return {
+      getBoundingClientRect: function getBoundingClientRect() {
+        var x = clientMouseCoord[0] + width / 2 + 20;
+        var y = clientMouseCoord[1];
+        return {
+          top: y,
+          left: x,
+          bottom: y,
+          right: x,
+          width: 0,
+          height: 0,
+          x: x,
+          y: y,
+          toJSON: function toJSON() {}
+        };
+      }
+    };
+  }, [clientMouseCoord, width]);
+
+  var _usePopper = (0, _reactPopper.usePopper)(virtElement, popperElt),
+      styles = _usePopper.styles,
+      attributes = _usePopper.attributes;
+
+  var contents = featureUnderMouse ? (0, _configuration.getConf)(model, 'mouseover', {
+    feature: featureUnderMouse
+  }) : undefined;
+  return featureUnderMouse && contents ? /*#__PURE__*/_react.default.createElement(_core.Portal, null, /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
+    ref: setPopperElt,
+    className: classes.tooltip // zIndex needed to go over widget drawer
+    ,
+    style: _objectSpread(_objectSpread({}, styles.popper), {}, {
+      zIndex: 100000
+    })
+  }, attributes.popper), /*#__PURE__*/_react.default.createElement(TooltipContents, {
+    ref: function ref(elt) {
+      return setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
+    },
+    message: contents
+  }))) : null;
+});
+var _default = Tooltip;
+exports.default = _default;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts

@@ -130,7 +130,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     estimatedRegionStatsP: Promise<Stats> | undefined;
     estimatedRegionStats: Stats | undefined;
 } & {
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     /**
@@ -172,8 +172,8 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         signal?: AbortSignal;
         filters?: string[];
     }): Promise<{}>;
-    setRegionStatsP(p?: Promise<Stats> | undefined): void;
-    setRegionStats(estimatedRegionStats?: Stats | undefined): void;
+    setRegionStatsP(p?: Promise<Stats>): void;
+    setRegionStats(estimatedRegionStats?: Stats): void;
     clearRegionStats(): void;
     setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
@@ -186,7 +186,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature: string | undefined): void;
     reload(): void;
-    setContextMenuFeature(feature?: Feature | undefined): void;
+    setContextMenuFeature(feature?: Feature): void;
 } & {
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js

@@ -371,8 +371,9 @@ var BaseLinearDisplay = _mobxStateTree.types.compose('BaseLinearDisplay', _model
 
       if ((0, _util.isSessionModelWithWidgets)(session)) {
         var featureWidget = session.addWidget('BaseFeatureWidget', 'baseFeature', {
-          featureData: feature.toJSON(),
-          view: (0, _util.getContainingView)(self)
+          view: (0, _util.getContainingView)(self),
+          track: (0, _util.getContainingTrack)(self),
+          featureData: feature.toJSON()
         });
         session.showWidget(featureWidget);
       }

package/dist/LinearBareDisplay/model.d.ts

@@ -118,7 +118,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;

package/dist/LinearBasicDisplay/model.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import { MenuItem } from '@jbrowse/core/ui';
 import { Instance } from 'mobx-state-tree';
@@ -124,7 +123,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;

package/dist/LinearBasicDisplay/model.js

@@ -62,7 +62,7 @@ var stateModelFactory = function stateModelFactory(configSchema) {
       get showDescriptions() {
         var _self$trackShowDescri;
 
-        return (_self$trackShowDescri = self.trackShowDescriptions) !== null && _self$trackShowDescri !== void 0 ? _self$trackShowDescri : (0, _configuration.getConf)(self, ['renderer', 'showLabels']);
+        return (_self$trackShowDescri = self.trackShowDescriptions) !== null && _self$trackShowDescri !== void 0 ? _self$trackShowDescri : (0, _configuration.getConf)(self, ['renderer', 'showDescriptions']);
       },
 
       get maxHeight() {
@@ -129,7 +129,7 @@ var stateModelFactory = function stateModelFactory(configSchema) {
           type: 'checkbox',
           checked: self.showDescriptions,
           onClick: function onClick() {
-            self.toggleShowDescriptions();
+            return self.toggleShowDescriptions();
           }
         }, {
           label: 'Display mode',

package/dist/LinearGenomeView/components/ExportSvgDialog.js

@@ -17,17 +17,17 @@ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/sli
 
 var _react = _interopRequireWildcard(require("react"));
 
-var _styles = require("@material-ui/core/styles");
-
 var _core = require("@material-ui/core");
 
+var _ui = require("@jbrowse/core/ui");
+
 var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
 function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-var useStyles = (0, _styles.makeStyles)(function (theme) {
+var useStyles = (0, _core.makeStyles)(function (theme) {
   return {
     closeButton: {
       position: 'absolute',
@@ -38,6 +38,17 @@ var useStyles = (0, _styles.makeStyles)(function (theme) {
   };
 });
 
+function LoadingMessage() {
+  return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_core.CircularProgress, {
+    size: 20,
+    style: {
+      marginRight: 20
+    }
+  }), /*#__PURE__*/_react.default.createElement(_core.Typography, {
+    display: "inline"
+  }, "Creating SVG"));
+}
+
 function ExportSvgDlg(_ref) {
   var model = _ref.model,
       handleClose = _ref.handleClose;
@@ -54,10 +65,15 @@ function ExportSvgDlg(_ref) {
       loading = _useState4[0],
       setLoading = _useState4[1];
 
-  var _useState5 = (0, _react.useState)(),
+  var _useState5 = (0, _react.useState)('jbrowse.svg'),
       _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
-      error = _useState6[0],
-      setError = _useState6[1];
+      filename = _useState6[0],
+      setFilename = _useState6[1];
+
+  var _useState7 = (0, _react.useState)(),
+      _useState8 = (0, _slicedToArray2.default)(_useState7, 2),
+      error = _useState8[0],
+      setError = _useState8[1];
 
   var classes = useStyles();
   return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
@@ -66,18 +82,15 @@ function ExportSvgDlg(_ref) {
   }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Export SVG", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
     className: classes.closeButton,
     onClick: handleClose
-  }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, error ? /*#__PURE__*/_react.default.createElement("div", {
-    style: {
-      color: 'red'
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, error ? /*#__PURE__*/_react.default.createElement(_ui.ErrorMessage, {
+    error: error
+  }) : loading ? /*#__PURE__*/_react.default.createElement(LoadingMessage, null) : null, /*#__PURE__*/_react.default.createElement(_core.TextField, {
+    helperText: "filename",
+    value: filename,
+    onChange: function onChange(event) {
+      return setFilename(event.target.value);
     }
-  }, "".concat(error)) : loading ? /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_core.CircularProgress, {
-    size: 20,
-    style: {
-      marginRight: 20
-    }
-  }), /*#__PURE__*/_react.default.createElement(_core.Typography, {
-    display: "inline"
-  }, "Creating SVG")) : null, offscreenCanvas ? /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
+  }), offscreenCanvas ? /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
     control: /*#__PURE__*/_react.default.createElement(_core.Checkbox, {
       checked: rasterizeLayers,
       onChange: function onChange() {
@@ -107,12 +120,13 @@ function ExportSvgDlg(_ref) {
               _context.prev = 2;
               _context.next = 5;
               return model.exportSvg({
-                rasterizeLayers: rasterizeLayers
+                rasterizeLayers: rasterizeLayers,
+                filename: filename
               });
 
             case 5:
               handleClose();
-              _context.next = 12;
+              _context.next = 13;
               break;
 
             case 8:
@@ -120,18 +134,14 @@ function ExportSvgDlg(_ref) {
               _context.t0 = _context["catch"](2);
               console.error(_context.t0);
               setError(_context.t0);
-
-            case 12:
-              _context.prev = 12;
               setLoading(false);
-              return _context.finish(12);
 
-            case 15:
+            case 13:
             case "end":
               return _context.stop();
           }
         }
-      }, _callee, null, [[2, 8, 12, 15]]);
+      }, _callee, null, [[2, 8]]);
     }))
   }, "Submit")));
 }

package/dist/LinearGenomeView/components/Header.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
 declare type LGV = LinearGenomeViewModel;
 declare const LinearGenomeViewHeader: ({ model }: {

package/dist/LinearGenomeView/components/Header.js

@@ -13,6 +13,8 @@ var _mobxReact = require("mobx-react");
 
 var _core = require("@material-ui/core");
 
+var _util = require("@jbrowse/core/util");
+
 var _SearchBox = _interopRequireDefault(require("./SearchBox"));
 
 var _Icons = require("@jbrowse/core/ui/Icons");
@@ -102,7 +104,7 @@ var RegionWidth = (0, _mobxReact.observer)(function (_ref3) {
     variant: "body2",
     color: "textSecondary",
     className: classes.bp
-  }, Math.round(coarseTotalBp).toLocaleString('en-US'), " bp");
+  }, (0, _util.getBpDisplayStr)(coarseTotalBp));
 });
 
 var Controls = function Controls(_ref4) {

package/dist/LinearGenomeView/components/HelpDialog.js

@@ -34,12 +34,11 @@ function HelpDialog(_ref) {
     maxWidth: "xl",
     onClose: handleClose
   }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Using the search box", handleClose ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
-    "data-testid": "close-resultsDialog",
     className: classes.closeButton,
     onClick: function onClick() {
-      handleClose();
+      return handleClose();
     }
-  }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement("h3", null, "Searching"), /*#__PURE__*/_react.default.createElement("ul", null, /*#__PURE__*/_react.default.createElement("li", null, "Jump to a feature or reference sequence by typing its name in the location box and pressing Enter."), /*#__PURE__*/_react.default.createElement("li", null, "Jump to a specific region by typing the region into the location box as: ", /*#__PURE__*/_react.default.createElement("code", null, "ref:start..end"), " or ", /*#__PURE__*/_react.default.createElement("code", null, "ref:start-end"), ". Commas are allowed in the start and end coordinates. A space-separated list of locstrings can be used to open up multiple chromosomes at a time")), /*#__PURE__*/_react.default.createElement("h3", null, "Example Searches"), /*#__PURE__*/_react.default.createElement("ul", null, /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "BRCA"), " - searches for the feature named BRCA"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr4"), " - jumps to chromosome 4"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr4:79,500,000..80,000,000"), " - jumps the region on chromosome 4 between 79.5Mb and 80Mb."), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1:1-100 chr2:1-100"), " - create a split view of chr1:1-100 and chr2:1-100"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1 chr2 chr3"), " - open up multiple chromosomes at once"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1:1-100[rev] chr2:1-100"), " - open up the first region in the horizontally flipped orientation"))), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement("h3", null, "Searching"), /*#__PURE__*/_react.default.createElement("ul", null, /*#__PURE__*/_react.default.createElement("li", null, "Jump to a feature or reference sequence by typing its name in the location box and pressing Enter."), /*#__PURE__*/_react.default.createElement("li", null, "Jump to a specific region by typing the region into the location box as: ", /*#__PURE__*/_react.default.createElement("code", null, "ref:start..end"), " or ", /*#__PURE__*/_react.default.createElement("code", null, "ref:start-end"), ". Commas are allowed in the start and end coordinates. A space-separated list of locstrings can be used to open up multiple chromosomes at a time")), /*#__PURE__*/_react.default.createElement("h3", null, "Example Searches"), /*#__PURE__*/_react.default.createElement("ul", null, /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "BRCA"), " - searches for the feature named BRCA"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr4"), " - jumps to chromosome 4"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr4:79,500,000..80,000,000"), " - jumps the region on chromosome 4 between 79.5Mb and 80Mb."), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1:1-100 chr2:1-100"), " - create a split view of chr1:1-100 and chr2:1-100"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1 chr2 chr3"), " - open up multiple chromosomes at once"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1:1-100[rev] chr2:1-100"), " - open up the first region in the horizontally flipped orientation"), /*#__PURE__*/_react.default.createElement("li", null, /*#__PURE__*/_react.default.createElement("code", null, "chr1 100 200"), " - use whitespace separated refname, start, end"))), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
     onClick: function onClick() {
       return handleClose();
     },

package/dist/LinearGenomeView/components/ImportForm.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
 declare type LGV = LinearGenomeViewModel;
 declare const ImportForm: ({ model }: {