@jbrowse/plugin-linear-genome-view 1.7.3 → 1.7.4

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Files changed (40) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +18 -18
  2. package/dist/BaseLinearDisplay/components/Block.js +4 -4
  3. package/dist/BaseLinearDisplay/components/LinearBlocks.js +11 -11
  4. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +16 -16
  5. package/dist/BaseLinearDisplay/index.js +2 -2
  6. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +32 -32
  7. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -9
  8. package/dist/LinearBareDisplay/model.js +1 -1
  9. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +11 -11
  10. package/dist/LinearBasicDisplay/configSchema.js +1 -1
  11. package/dist/LinearBasicDisplay/index.js +2 -2
  12. package/dist/LinearBasicDisplay/model.js +10 -10
  13. package/dist/LinearGenomeView/components/CenterLine.js +5 -5
  14. package/dist/LinearGenomeView/components/ExportSvgDialog.js +16 -16
  15. package/dist/LinearGenomeView/components/Header.js +20 -20
  16. package/dist/LinearGenomeView/components/HelpDialog.js +4 -4
  17. package/dist/LinearGenomeView/components/ImportForm.js +28 -28
  18. package/dist/LinearGenomeView/components/LinearGenomeView.js +15 -15
  19. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +9 -9
  20. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +40 -40
  21. package/dist/LinearGenomeView/components/MiniControls.js +9 -9
  22. package/dist/LinearGenomeView/components/OverviewRubberBand.js +19 -19
  23. package/dist/LinearGenomeView/components/OverviewScaleBar.js +28 -28
  24. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +27 -27
  25. package/dist/LinearGenomeView/components/RubberBand.js +18 -18
  26. package/dist/LinearGenomeView/components/Ruler.js +11 -11
  27. package/dist/LinearGenomeView/components/ScaleBar.js +19 -19
  28. package/dist/LinearGenomeView/components/ScaleBar.test.js +3 -3
  29. package/dist/LinearGenomeView/components/SearchBox.js +9 -9
  30. package/dist/LinearGenomeView/components/SearchResultsDialog.js +15 -15
  31. package/dist/LinearGenomeView/components/SequenceDialog.js +21 -21
  32. package/dist/LinearGenomeView/components/TrackContainer.js +14 -14
  33. package/dist/LinearGenomeView/components/TrackLabel.js +14 -14
  34. package/dist/LinearGenomeView/components/TracksContainer.js +10 -10
  35. package/dist/LinearGenomeView/components/VerticalGuides.js +11 -11
  36. package/dist/LinearGenomeView/components/ZoomControls.js +9 -9
  37. package/dist/LinearGenomeView/index.js +35 -35
  38. package/dist/LinearGenomeView/index.test.js +19 -19
  39. package/dist/index.js +18 -18
  40. package/package.json +3 -4
package/dist/LinearGenomeView/components/RubberBand.js CHANGED
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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@@ -23,7 +23,7 @@ var _ui = require("@jbrowse/core/ui");
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  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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  var useStyles = (0, _core.makeStyles)(function (theme) {
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  var background = theme.palette.tertiary ? (0, _core.alpha)(theme.palette.tertiary.main, 0.7) : (0, _core.alpha)(theme.palette.primary.main, 0.7);
@@ -65,12 +65,12 @@ var VerticalGuide = (0, _mobxReact.observer)(function (_ref) {
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  var model = _ref.model,
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  coordX = _ref.coordX;
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  var classes = useStyles();
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- return /*#__PURE__*/_react["default"].createElement(_core.Tooltip, {
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+ return /*#__PURE__*/_react.default.createElement(_core.Tooltip, {
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  open: true,
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  placement: "top",
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  title: (0, _util.stringify)(model.pxToBp(coordX)),
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  arrow: true
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- }, /*#__PURE__*/_react["default"].createElement("div", {
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+ }, /*#__PURE__*/_react.default.createElement("div", {
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  className: classes.guide,
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  style: {
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  left: coordX,
@@ -82,27 +82,27 @@ var VerticalGuide = (0, _mobxReact.observer)(function (_ref) {
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  function RubberBand(_ref2) {
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  var model = _ref2.model,
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  _ref2$ControlComponen = _ref2.ControlComponent,
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- ControlComponent = _ref2$ControlComponen === void 0 ? /*#__PURE__*/_react["default"].createElement("div", null) : _ref2$ControlComponen;
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+ ControlComponent = _ref2$ControlComponen === void 0 ? /*#__PURE__*/_react.default.createElement("div", null) : _ref2$ControlComponen;
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  var _useState = (0, _react.useState)(),
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- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
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+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
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  startX = _useState2[0],
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  setStartX = _useState2[1];
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  var _useState3 = (0, _react.useState)(),
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- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
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+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
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  currentX = _useState4[0],
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  setCurrentX = _useState4[1]; // clientX and clientY used for anchorPosition for menu
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  // offsetX used for calculations about width of selection
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  var _useState5 = (0, _react.useState)(),
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- _useState6 = (0, _slicedToArray2["default"])(_useState5, 2),
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+ _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
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  anchorPosition = _useState6[0],
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  setAnchorPosition = _useState6[1];
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  var _useState7 = (0, _react.useState)(),
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- _useState8 = (0, _slicedToArray2["default"])(_useState7, 2),
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+ _useState8 = (0, _slicedToArray2.default)(_useState7, 2),
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  guideX = _useState8[0],
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  setGuideX = _useState8[1];
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@@ -217,10 +217,10 @@ function RubberBand(_ref2) {
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  }
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  if (startX === undefined) {
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, guideX !== undefined ? /*#__PURE__*/_react["default"].createElement(VerticalGuide, {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, guideX !== undefined ? /*#__PURE__*/_react.default.createElement(VerticalGuide, {
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  model: model,
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  coordX: guideX
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- }) : null, /*#__PURE__*/_react["default"].createElement("div", {
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+ }) : null, /*#__PURE__*/_react.default.createElement("div", {
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  "data-testid": "rubberBand_controls",
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  className: classes.rubberBandControl,
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  role: "presentation",
@@ -239,7 +239,7 @@ function RubberBand(_ref2) {
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  var leftBpOffset = model.pxToBp(left);
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  var rightBpOffset = model.pxToBp(left + width);
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  var numOfBpSelected = Math.ceil(width * model.bpPerPx);
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, rubberBandRef.current ? /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_core.Popover, {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, rubberBandRef.current ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Popover, {
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  className: classes.popover,
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  classes: {
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  paper: classes.paper
@@ -256,7 +256,7 @@ function RubberBand(_ref2) {
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  },
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  keepMounted: true,
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  disableRestoreFocus: true
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- }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, (0, _util.stringify)(leftBpOffset))), /*#__PURE__*/_react["default"].createElement(_core.Popover, {
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+ }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, (0, _util.stringify)(leftBpOffset))), /*#__PURE__*/_react.default.createElement(_core.Popover, {
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  className: classes.popover,
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  classes: {
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  paper: classes.paper
@@ -273,17 +273,17 @@ function RubberBand(_ref2) {
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  },
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  keepMounted: true,
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  disableRestoreFocus: true
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- }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, (0, _util.stringify)(rightBpOffset)))) : null, /*#__PURE__*/_react["default"].createElement("div", {
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+ }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, (0, _util.stringify)(rightBpOffset)))) : null, /*#__PURE__*/_react.default.createElement("div", {
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  ref: rubberBandRef,
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  className: classes.rubberBand,
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  style: {
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  left: left,
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  width: width
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  }
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- }, /*#__PURE__*/_react["default"].createElement(_core.Typography, {
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+ }, /*#__PURE__*/_react.default.createElement(_core.Typography, {
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  variant: "h6",
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  className: classes.rubberBandText
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- }, numOfBpSelected.toLocaleString('en-US'), " bp")), /*#__PURE__*/_react["default"].createElement("div", {
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+ }, numOfBpSelected.toLocaleString('en-US'), " bp")), /*#__PURE__*/_react.default.createElement("div", {
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  "data-testid": "rubberBand_controls",
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  className: classes.rubberBandControl,
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  role: "presentation",
@@ -291,7 +291,7 @@ function RubberBand(_ref2) {
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  onMouseDown: mouseDown,
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  onMouseOut: mouseOut,
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  onMouseMove: mouseMove
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- }, ControlComponent), anchorPosition ? /*#__PURE__*/_react["default"].createElement(_ui.Menu, {
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+ }, ControlComponent), anchorPosition ? /*#__PURE__*/_react.default.createElement(_ui.Menu, {
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  anchorReference: "anchorPosition",
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  anchorPosition: {
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  left: anchorPosition.clientX,
@@ -306,4 +306,4 @@ function RubberBand(_ref2) {
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  var _default = (0, _mobxReact.observer)(RubberBand);
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- exports["default"] = _default;
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+ exports.default = _default;
package/dist/LinearGenomeView/components/Ruler.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _styles = require("@material-ui/core/styles");
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@@ -53,9 +53,9 @@ function Ruler(_ref) {
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  minor = _ref.minor;
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  var classes = useStyles();
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  var ticks = (0, _util.makeTicks)(start, end, bpPerPx, major, minor);
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, ticks.map(function (tick) {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, ticks.map(function (tick) {
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  var x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
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- return /*#__PURE__*/_react["default"].createElement("line", {
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+ return /*#__PURE__*/_react.default.createElement("line", {
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  key: tick.base,
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  x1: x,
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  x2: x,
@@ -70,7 +70,7 @@ function Ruler(_ref) {
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  return tick.type === 'major';
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  }).map(function (tick) {
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  var x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
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- return /*#__PURE__*/_react["default"].createElement("text", {
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+ return /*#__PURE__*/_react.default.createElement("text", {
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  x: x - 3,
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  y: 7 + 11,
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  key: "label-".concat(tick.base),
@@ -83,12 +83,12 @@ function Ruler(_ref) {
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  }
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  Ruler.propTypes = {
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- start: _propTypes["default"].number.isRequired,
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- end: _propTypes["default"].number.isRequired,
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- bpPerPx: _propTypes["default"].number.isRequired,
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- reversed: _propTypes["default"].bool,
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- major: _propTypes["default"].bool,
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- minor: _propTypes["default"].bool
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+ start: _propTypes.default.number.isRequired,
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+ end: _propTypes.default.number.isRequired,
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+ bpPerPx: _propTypes.default.number.isRequired,
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+ reversed: _propTypes.default.bool,
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+ major: _propTypes.default.bool,
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+ minor: _propTypes.default.bool
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  };
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  Ruler.defaultProps = {
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@@ -98,4 +98,4 @@ Ruler.defaultProps = {
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+ exports.default = _default;
package/dist/LinearGenomeView/components/ScaleBar.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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@@ -31,7 +31,7 @@ var _excluded = ["model", "style", "className"];
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  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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  var useStyles = (0, _core.makeStyles)(function (theme) {
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  return {
@@ -85,8 +85,8 @@ var RenderedRefNameLabels = (0, _mobxReact.observer)(function (_ref) {
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  lastLeftBlock = i;
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  }
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  });
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, model.staticBlocks.map(function (block, index) {
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- return block instanceof _blockTypes.ContentBlock && (block.isLeftEndOfDisplayedRegion || index === lastLeftBlock) ? /*#__PURE__*/_react["default"].createElement(_core.Typography, {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, model.staticBlocks.map(function (block, index) {
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+ return block instanceof _blockTypes.ContentBlock && (block.isLeftEndOfDisplayedRegion || index === lastLeftBlock) ? /*#__PURE__*/_react.default.createElement(_core.Typography, {
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  key: "refLabel-".concat(block.key, "-").concat(index),
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  style: {
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  left: index === lastLeftBlock ? Math.max(0, -model.offsetPx) : block.offsetPx - model.offsetPx - 1,
@@ -100,23 +100,23 @@ var RenderedRefNameLabels = (0, _mobxReact.observer)(function (_ref) {
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  var RenderedScaleBarLabels = (0, _mobxReact.observer)(function (_ref2) {
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  var model = _ref2.model;
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  var classes = useStyles();
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, model.staticBlocks.map(function (block, index) {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, model.staticBlocks.map(function (block, index) {
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  if (block instanceof _blockTypes.ContentBlock) {
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  var ticks = (0, _util.makeTicks)(block.start, block.end, model.bpPerPx, true, false);
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- return /*#__PURE__*/_react["default"].createElement(_Block.ContentBlock, {
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+ return /*#__PURE__*/_react.default.createElement(_Block.ContentBlock, {
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  key: "".concat(block.key, "-").concat(index),
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  block: block
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  }, ticks.map(function (tick) {
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  if (tick.type === 'major') {
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  var x = (block.reversed ? block.end - tick.base : tick.base - block.start) / model.bpPerPx;
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  var baseNumber = (tick.base + 1).toLocaleString('en-US');
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- return /*#__PURE__*/_react["default"].createElement("div", {
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+ return /*#__PURE__*/_react.default.createElement("div", {
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  key: tick.base,
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  className: classes.tick,
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  style: {
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  left: x
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  }
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- }, baseNumber ? /*#__PURE__*/_react["default"].createElement(_core.Typography, {
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+ }, baseNumber ? /*#__PURE__*/_react.default.createElement(_core.Typography, {
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  className: classes.majorTickLabel
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  }, baseNumber) : null);
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  }
@@ -126,14 +126,14 @@ var RenderedScaleBarLabels = (0, _mobxReact.observer)(function (_ref2) {
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  }
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- return /*#__PURE__*/_react["default"].createElement(_Block.ElidedBlock, {
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+ return /*#__PURE__*/_react.default.createElement(_Block.ElidedBlock, {
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  key: block.key,
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  width: block.widthPx
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  });
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  }
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  if (block instanceof _blockTypes.InterRegionPaddingBlock) {
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- return /*#__PURE__*/_react["default"].createElement(_Block.InterRegionPaddingBlock, {
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+ return /*#__PURE__*/_react.default.createElement(_Block.InterRegionPaddingBlock, {
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  key: block.key,
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  width: block.widthPx,
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  style: {
@@ -147,38 +147,38 @@ var RenderedScaleBarLabels = (0, _mobxReact.observer)(function (_ref2) {
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  }));
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  });
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- var ScaleBar = /*#__PURE__*/_react["default"].forwardRef(function (_ref3, ref) {
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+ var ScaleBar = /*#__PURE__*/_react.default.forwardRef(function (_ref3, ref) {
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  var model = _ref3.model,
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  style = _ref3.style,
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  className = _ref3.className,
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- other = (0, _objectWithoutProperties2["default"])(_ref3, _excluded);
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+ other = (0, _objectWithoutProperties2.default)(_ref3, _excluded);
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  var classes = useStyles();
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  var offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
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- return /*#__PURE__*/_react["default"].createElement(_core.Paper, (0, _extends2["default"])({
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+ return /*#__PURE__*/_react.default.createElement(_core.Paper, (0, _extends2.default)({
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  "data-resizer": "true" // used to avoid click-and-drag scrolls on trackscontainer
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  ,
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- className: (0, _clsx["default"])(classes.scaleBarContainer, className),
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+ className: (0, _clsx.default)(classes.scaleBarContainer, className),
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  variant: "outlined",
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  ref: ref,
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  style: style
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- }, other), /*#__PURE__*/_react["default"].createElement("div", {
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+ }, other), /*#__PURE__*/_react.default.createElement("div", {
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  className: classes.scaleBarZoomContainer,
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  style: {
167
167
  transform: model.scaleFactor !== 1 ? "scaleX(".concat(model.scaleFactor, ")") : undefined
168
168
  }
169
- }, /*#__PURE__*/_react["default"].createElement("div", {
169
+ }, /*#__PURE__*/_react.default.createElement("div", {
170
170
  className: classes.scaleBar,
171
171
  style: _objectSpread({
172
172
  left: offsetLeft - 1,
173
173
  width: model.staticBlocks.totalWidthPx
174
174
  }, style)
175
- }, /*#__PURE__*/_react["default"].createElement(RenderedScaleBarLabels, {
175
+ }, /*#__PURE__*/_react.default.createElement(RenderedScaleBarLabels, {
176
176
  model: model
177
- }))), /*#__PURE__*/_react["default"].createElement(RenderedRefNameLabels, {
177
+ }))), /*#__PURE__*/_react.default.createElement(RenderedRefNameLabels, {
178
178
  model: model
179
179
  }));
180
180
  });
181
181
 
182
182
  var _default = (0, _mobxReact.observer)(ScaleBar);
183
183
 
184
- exports["default"] = _default;
184
+ exports.default = _default;
package/dist/LinearGenomeView/components/ScaleBar.test.js CHANGED
@@ -55,7 +55,7 @@ describe('ScaleBar genome view component', function () {
55
55
  });
56
56
  var model = session.views[0];
57
57
 
58
- var _render = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_ScaleBar["default"], {
58
+ var _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_ScaleBar.default, {
59
59
  model: model
60
60
  })),
61
61
  getByTestId = _render.getByTestId;
@@ -105,7 +105,7 @@ describe('ScaleBar genome view component', function () {
105
105
  });
106
106
  var model = session.views[0];
107
107
 
108
- var _render2 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_ScaleBar["default"], {
108
+ var _render2 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_ScaleBar.default, {
109
109
  model: model
110
110
  })),
111
111
  getByTestId = _render2.getByTestId;
@@ -165,7 +165,7 @@ describe('ScaleBar genome view component', function () {
165
165
  });
166
166
  var model = session.views[0];
167
167
 
168
- var _render3 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_ScaleBar["default"], {
168
+ var _render3 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_ScaleBar.default, {
169
169
  model: model
170
170
  })),
171
171
  queryByTestId = _render3.queryByTestId;
package/dist/LinearGenomeView/components/SearchBox.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
@@ -57,11 +57,11 @@ function SearchBox(_ref) {
57
57
  }
58
58
 
59
59
  function _fetchResults() {
60
- _fetchResults = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(query, searchType) {
60
+ _fetchResults = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(query, searchType) {
61
61
  var _assembly$allRefNames;
62
62
 
63
63
  var textSearchResults, refNameResults;
64
- return _regenerator["default"].wrap(function _callee$(_context) {
64
+ return _regenerator.default.wrap(function _callee$(_context) {
65
65
  while (1) {
66
66
  switch (_context.prev = _context.next) {
67
67
  case 0:
@@ -80,11 +80,11 @@ function SearchBox(_ref) {
80
80
  refNameResults = assembly === null || assembly === void 0 ? void 0 : (_assembly$allRefNames = assembly.allRefNames) === null || _assembly$allRefNames === void 0 ? void 0 : _assembly$allRefNames.filter(function (refName) {
81
81
  return refName.startsWith(query);
82
82
  }).map(function (r) {
83
- return new _BaseResults["default"]({
83
+ return new _BaseResults.default({
84
84
  label: r
85
85
  });
86
86
  }).slice(0, 10);
87
- return _context.abrupt("return", (0, _util2.dedupe)([].concat((0, _toConsumableArray2["default"])(refNameResults || []), (0, _toConsumableArray2["default"])(textSearchResults || [])), function (elt) {
87
+ return _context.abrupt("return", (0, _util2.dedupe)([].concat((0, _toConsumableArray2.default)(refNameResults || []), (0, _toConsumableArray2.default)(textSearchResults || [])), function (elt) {
88
88
  return elt.getId();
89
89
  }));
90
90
 
@@ -103,10 +103,10 @@ function SearchBox(_ref) {
103
103
  }
104
104
 
105
105
  function _handleSelectedRegion() {
106
- _handleSelectedRegion = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(option) {
106
+ _handleSelectedRegion = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(option) {
107
107
  var trackId, location, label, _assembly$allRefNames2, results;
108
108
 
109
- return _regenerator["default"].wrap(function _callee2$(_context2) {
109
+ return _regenerator.default.wrap(function _callee2$(_context2) {
110
110
  while (1) {
111
111
  switch (_context2.prev = _context2.next) {
112
112
  case 0:
@@ -172,7 +172,7 @@ function SearchBox(_ref) {
172
172
  return _handleSelectedRegion.apply(this, arguments);
173
173
  }
174
174
 
175
- return /*#__PURE__*/_react["default"].createElement(_RefNameAutocomplete["default"], {
175
+ return /*#__PURE__*/_react.default.createElement(_RefNameAutocomplete.default, {
176
176
  showHelp: showHelp,
177
177
  onSelect: handleSelectedRegion,
178
178
  assemblyName: assemblyName,
@@ -198,4 +198,4 @@ function SearchBox(_ref) {
198
198
 
199
199
  var _default = (0, _mobxReact.observer)(SearchBox);
200
200
 
201
- exports["default"] = _default;
201
+ exports.default = _default;
package/dist/LinearGenomeView/components/SearchResultsDialog.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = SearchResultsDialog;
8
+ exports.default = SearchResultsDialog;
9
9
  exports.useStyles = void 0;
10
10
 
11
11
  var _react = _interopRequireDefault(require("react"));
@@ -105,37 +105,37 @@ function SearchResultsDialog(_ref) {
105
105
  return '';
106
106
  }
107
107
 
108
- return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
108
+ return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
109
109
  open: true,
110
110
  maxWidth: "xl",
111
111
  onClose: handleClose
112
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, "Search results", handleClose ? /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
112
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Search results", handleClose ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
113
113
  "data-testid": "close-resultsDialog",
114
114
  className: classes.closeButton,
115
115
  onClick: function onClick() {
116
116
  handleClose();
117
117
  }
118
- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null)) : null), /*#__PURE__*/_react["default"].createElement(_core.Divider, null), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, !((_model$searchResults = model.searchResults) !== null && _model$searchResults !== void 0 && _model$searchResults.length) ? /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "No results found for ", /*#__PURE__*/_react["default"].createElement("b", null, model.searchQuery)) : /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Showing results for ", /*#__PURE__*/_react["default"].createElement("b", null, model.searchQuery)), /*#__PURE__*/_react["default"].createElement(_core.TableContainer, {
118
+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, !((_model$searchResults = model.searchResults) !== null && _model$searchResults !== void 0 && _model$searchResults.length) ? /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No results found for ", /*#__PURE__*/_react.default.createElement("b", null, model.searchQuery)) : /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Showing results for ", /*#__PURE__*/_react.default.createElement("b", null, model.searchQuery)), /*#__PURE__*/_react.default.createElement(_core.TableContainer, {
119
119
  component: _core.Paper
120
- }, /*#__PURE__*/_react["default"].createElement(_core.Table, null, /*#__PURE__*/_react["default"].createElement(_core.TableHead, null, /*#__PURE__*/_react["default"].createElement(_core.TableRow, null, /*#__PURE__*/_react["default"].createElement(_core.TableCell, null, "Name"), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
120
+ }, /*#__PURE__*/_react.default.createElement(_core.Table, null, /*#__PURE__*/_react.default.createElement(_core.TableHead, null, /*#__PURE__*/_react.default.createElement(_core.TableRow, null, /*#__PURE__*/_react.default.createElement(_core.TableCell, null, "Name"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
121
121
  align: "right"
122
- }, "Location"), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
122
+ }, "Location"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
123
123
  align: "right"
124
- }, "Track"), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
124
+ }, "Track"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
125
125
  align: "right"
126
- }))), /*#__PURE__*/_react["default"].createElement(_core.TableBody, null, model.searchResults.map(function (result) {
127
- return /*#__PURE__*/_react["default"].createElement(_core.TableRow, {
126
+ }))), /*#__PURE__*/_react.default.createElement(_core.TableBody, null, model.searchResults.map(function (result) {
127
+ return /*#__PURE__*/_react.default.createElement(_core.TableRow, {
128
128
  key: "".concat(result.getId())
129
- }, /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
129
+ }, /*#__PURE__*/_react.default.createElement(_core.TableCell, {
130
130
  component: "th",
131
131
  scope: "row"
132
- }, result.getLabel()), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
132
+ }, result.getLabel()), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
133
133
  align: "right"
134
- }, result.getLocation()), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
134
+ }, result.getLocation()), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
135
135
  align: "right"
136
- }, getTrackName(result.getTrackId()) || 'N/A'), /*#__PURE__*/_react["default"].createElement(_core.TableCell, {
136
+ }, getTrackName(result.getTrackId()) || 'N/A'), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
137
137
  align: "right"
138
- }, /*#__PURE__*/_react["default"].createElement(_core.Button, {
138
+ }, /*#__PURE__*/_react.default.createElement(_core.Button, {
139
139
  onClick: function onClick() {
140
140
  handleClick(result.getLocation());
141
141
  var resultTrackId = result.getTrackId();
@@ -150,7 +150,7 @@ function SearchResultsDialog(_ref) {
150
150
  color: "primary",
151
151
  variant: "contained"
152
152
  }, "Go")));
153
- })))))), /*#__PURE__*/_react["default"].createElement(_core.Divider, null), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
153
+ })))))), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
154
154
  onClick: function onClick() {
155
155
  return handleClose();
156
156
  },
package/dist/LinearGenomeView/components/SequenceDialog.js CHANGED
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
13
13
 
@@ -39,7 +39,7 @@ var _GetApp = _interopRequireDefault(require("@material-ui/icons/GetApp"));
39
39
 
40
40
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
41
41
 
42
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
42
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
43
43
 
44
44
  // icons
45
45
  var useStyles = (0, _core.makeStyles)(function (theme) {
@@ -70,9 +70,9 @@ function fetchSequence(_x, _x2, _x3) {
70
70
  }
71
71
 
72
72
  function _fetchSequence() {
73
- _fetchSequence = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(model, regions, signal) {
73
+ _fetchSequence = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(model, regions, signal) {
74
74
  var session, leftOffset, rightOffset, rpcManager, assemblyManager, assemblyName, assembly, adapterConfig, sessionId, chunks;
75
- return _regenerator["default"].wrap(function _callee2$(_context2) {
75
+ return _regenerator.default.wrap(function _callee2$(_context2) {
76
76
  while (1) {
77
77
  switch (_context2.prev = _context2.next) {
78
78
  case 0:
@@ -142,12 +142,12 @@ function SequenceDialog(_ref) {
142
142
  var session = (0, _util.getSession)(model);
143
143
 
144
144
  var _useState = (0, _react.useState)(),
145
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
145
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
146
146
  error = _useState2[0],
147
147
  setError = _useState2[1];
148
148
 
149
149
  var _useState3 = (0, _react.useState)(),
150
- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
150
+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
151
151
  sequence = _useState4[0],
152
152
  setSequence = _useState4[1];
153
153
 
@@ -163,9 +163,9 @@ function SequenceDialog(_ref) {
163
163
  (0, _react.useEffect)(function () {
164
164
  var active = true;
165
165
  var controller = new AbortController();
166
- (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
166
+ (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
167
167
  var chunks;
168
- return _regenerator["default"].wrap(function _callee$(_context) {
168
+ return _regenerator.default.wrap(function _callee$(_context) {
169
169
  while (1) {
170
170
  switch (_context.prev = _context.next) {
171
171
  case 0:
@@ -235,31 +235,31 @@ function SequenceDialog(_ref) {
235
235
  };
236
236
  }, [model, session, regionsSelected, setSequence]);
237
237
  var sequenceTooLarge = sequence ? sequence.length > 1000000 : false;
238
- return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
238
+ return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
239
239
  "data-testid": "sequence-dialog",
240
240
  maxWidth: "xl",
241
241
  open: true,
242
242
  onClose: handleClose,
243
243
  "aria-labelledby": "alert-dialog-title",
244
244
  "aria-describedby": "alert-dialog-description"
245
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, {
245
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, {
246
246
  id: "alert-dialog-title"
247
- }, "Reference sequence", handleClose ? /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
247
+ }, "Reference sequence", handleClose ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
248
248
  "data-testid": "close-seqDialog",
249
249
  className: classes.closeButton,
250
250
  onClick: function onClick() {
251
251
  handleClose();
252
252
  model.setOffsets(undefined, undefined);
253
253
  }
254
- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null)) : null), /*#__PURE__*/_react["default"].createElement(_core.Divider, null), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, error ? /*#__PURE__*/_react["default"].createElement(_core.Typography, {
254
+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, error ? /*#__PURE__*/_react.default.createElement(_core.Typography, {
255
255
  color: "error"
256
- }, "".concat(error)) : null, loading && !error ? /*#__PURE__*/_react["default"].createElement(_core.Container, null, "Retrieving reference sequence...", /*#__PURE__*/_react["default"].createElement(_core.CircularProgress, {
256
+ }, "".concat(error)) : null, loading && !error ? /*#__PURE__*/_react.default.createElement(_core.Container, null, "Retrieving reference sequence...", /*#__PURE__*/_react.default.createElement(_core.CircularProgress, {
257
257
  style: {
258
258
  marginLeft: 10
259
259
  },
260
260
  size: 20,
261
261
  disableShrink: true
262
- })) : null, /*#__PURE__*/_react["default"].createElement(_core.TextField, {
262
+ })) : null, /*#__PURE__*/_react.default.createElement(_core.TextField, {
263
263
  "data-testid": "rubberband-sequence",
264
264
  variant: "outlined",
265
265
  multiline: true,
@@ -274,15 +274,15 @@ function SequenceDialog(_ref) {
274
274
  input: classes.textAreaFont
275
275
  }
276
276
  }
277
- })), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
277
+ })), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
278
278
  onClick: function onClick() {
279
- (0, _copyToClipboard["default"])(sequence || '');
279
+ (0, _copyToClipboard.default)(sequence || '');
280
280
  session.notify('Copied to clipboard', 'success');
281
281
  },
282
282
  disabled: loading || !!error || sequenceTooLarge,
283
283
  color: "primary",
284
- startIcon: /*#__PURE__*/_react["default"].createElement(_Icons.ContentCopy, null)
285
- }, "Copy to clipboard"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
284
+ startIcon: /*#__PURE__*/_react.default.createElement(_Icons.ContentCopy, null)
285
+ }, "Copy to clipboard"), /*#__PURE__*/_react.default.createElement(_core.Button, {
286
286
  onClick: function onClick() {
287
287
  var seqFastaFile = new Blob([sequence || ''], {
288
288
  type: 'text/x-fasta;charset=utf-8'
@@ -291,8 +291,8 @@ function SequenceDialog(_ref) {
291
291
  },
292
292
  disabled: loading || !!error,
293
293
  color: "primary",
294
- startIcon: /*#__PURE__*/_react["default"].createElement(_GetApp["default"], null)
295
- }, "Download FASTA"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
294
+ startIcon: /*#__PURE__*/_react.default.createElement(_GetApp.default, null)
295
+ }, "Download FASTA"), /*#__PURE__*/_react.default.createElement(_core.Button, {
296
296
  onClick: handleClose,
297
297
  color: "primary",
298
298
  autoFocus: true
@@ -301,4 +301,4 @@ function SequenceDialog(_ref) {
301
301
 
302
302
  var _default = (0, _mobxReact.observer)(SequenceDialog);
303
303
 
304
- exports["default"] = _default;
304
+ exports.default = _default;