@jbrowse/plugin-linear-genome-view 1.6.6 → 1.6.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearBareDisplay/model.d.ts +7 -7
- package/dist/LinearBasicDisplay/model.d.ts +7 -7
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +6 -6
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +1 -2
- package/dist/index.d.ts +21 -21
- package/dist/plugin-linear-genome-view.cjs.development.js +64 -39
- package/dist/plugin-linear-genome-view.cjs.development.js.map +1 -1
- package/dist/plugin-linear-genome-view.cjs.production.min.js +1 -1
- package/dist/plugin-linear-genome-view.cjs.production.min.js.map +1 -1
- package/dist/plugin-linear-genome-view.esm.js +64 -39
- package/dist/plugin-linear-genome-view.esm.js.map +1 -1
- package/package.json +2 -2
- package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +9 -12
- package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +21 -12
- package/src/LinearGenomeView/components/TrackContainer.tsx +46 -27
- package/src/LinearGenomeView/components/TracksContainer.tsx +0 -1
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +222 -248
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@@ -25,7 +25,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
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features: Map<string, import("@jbrowse/core/util
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
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features: Map<string, import("@jbrowse/core/util
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features: Map<string, import("@jbrowse/core/util").Feature>;
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layout: any;
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maxHeightReached: boolean;
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renderProps: any;
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currBpPerPx: number;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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scrollTop: number;
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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@@ -126,8 +126,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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readonly selectedFeatureId: string | undefined;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util
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readonly featureUnderMouse: import("@jbrowse/core/util
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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@@ -154,11 +154,11 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
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deleteBlock(key: string): void;
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selectFeature(feature: import("@jbrowse/core/util
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selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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clearFeatureSelection(): void;
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setFeatureIdUnderMouse(feature: string | undefined): void;
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reload(): void;
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setContextMenuFeature(feature?: import("@jbrowse/core/util
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setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
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features: Map<string, import("@jbrowse/core/util
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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status: string;
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error: unknown;
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@@ -45,7 +45,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
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features: Map<string, import("@jbrowse/core/util
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features: Map<string, import("@jbrowse/core/util").Feature>;
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layout: any;
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maxHeightReached: boolean;
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renderProps: any;
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currBpPerPx: number;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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scrollTop: number;
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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readonly selectedFeatureId: string | undefined;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util
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readonly featureUnderMouse: import("@jbrowse/core/util
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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@@ -160,11 +160,11 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
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deleteBlock(key: string): void;
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selectFeature(feature: import("@jbrowse/core/util
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selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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clearFeatureSelection(): void;
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setFeatureIdUnderMouse(feature: string | undefined): void;
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reload(): void;
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setContextMenuFeature(feature?: import("@jbrowse/core/util
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setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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@@ -20,7 +20,7 @@ declare const Cytobands: ({ overview, block, assembly, }: {
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refNameAliases: {
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[key: string]: string;
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} | undefined;
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cytobands: import("@jbrowse/core/util
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cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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} & {
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readonly initialized: boolean;
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readonly name: string;
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setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
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adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
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refNameAliases: Record<string, string>;
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cytobands: import("@jbrowse/core/util
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cytobands: import("@jbrowse/core/util").Feature[];
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}): void;
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setError(e: Error): void;
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setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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setRefNameAliases(refNameAliases: Record<string, string>): void;
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setCytobands(cytobands: import("@jbrowse/core/util
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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afterAttach(): void;
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} & {
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
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[key: string]: string;
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} | undefined;
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cytobands: import("@jbrowse/core/util
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cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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} & {
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readonly initialized: boolean;
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readonly name: string;
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setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
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adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
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cytobands: import("@jbrowse/core/util
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cytobands: import("@jbrowse/core/util").Feature[];
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}): void;
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setError(e: Error): void;
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setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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setRefNameAliases(refNameAliases: Record<string, string>): void;
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setCytobands(cytobands: import("@jbrowse/core/util
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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afterAttach(): void;
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} & {
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
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/// <reference types="react" />
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import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
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import { LinearGenomeViewModel } from '..';
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declare type LGV = LinearGenomeViewModel;
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declare function TrackContainer({ model, track, }: {
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model:
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model: LinearGenomeViewModel;
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track: BaseTrackModel;
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}): JSX.Element;
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declare const _default: typeof TrackContainer;
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package/dist/index.d.ts
CHANGED
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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layout: any;
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error: unknown;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
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features: Map<string, import("@jbrowse/core/util").Feature>;
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renderProps: any;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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scrollTop: number;
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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readonly selectedFeatureId: string | undefined;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util
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readonly featureUnderMouse: import("@jbrowse/core/util
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
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deleteBlock(key: string): void;
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selectFeature(feature: import("@jbrowse/core/util
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selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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clearFeatureSelection(): void;
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setFeatureIdUnderMouse(feature: string | undefined): void;
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reload(): void;
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setContextMenuFeature(feature?: import("@jbrowse/core/util
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setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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error: unknown;
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setRendered(props: {
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reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
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features: Map<string, import("@jbrowse/core/util").Feature>;
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renderProps: any;
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currBpPerPx: number;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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scrollTop: number;
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@@ -1467,14 +1467,17 @@ var BaseLinearDisplay = /*#__PURE__*/mobxReact.observer(function (props) {
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var useStyles$c = /*#__PURE__*/
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var useStyles$c = /*#__PURE__*/styles.makeStyles(function (theme) {
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},
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},
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// aligns with block bounderies. check for example the breakpoint split view
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renderingComponentContainer: {
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position: 'absolute',
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// -1 offset because of the 1px border of the Paper
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function TrackContainer(_ref) {
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}, /*#__PURE__*/React__default.createElement(TrackContainerLabel, {
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}) : null, /*#__PURE__*/React__default.createElement("div", {
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}, /*#__PURE__*/React__default.createElement("div", {
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|
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|
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}), /*#__PURE__*/React__default.createElement("div", {
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}, /*#__PURE__*/React__default.createElement(CloseIcon, null))), /*#__PURE__*/React__default.createElement(core.DialogContent,
|
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}, /*#__PURE__*/React__default.createElement(CloseIcon, null))), /*#__PURE__*/React__default.createElement(core.DialogContent, {
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}, /*#__PURE__*/React__default.createElement(core.Typography, null, "Set max height for the track"), /*#__PURE__*/React__default.createElement(core.TextField, {
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}, /*#__PURE__*/React__default.createElement(core.Typography, null, "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\""), /*#__PURE__*/React__default.createElement(core.TextField, {
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}), /*#__PURE__*/React__default.createElement(core.Button, {
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}), /*#__PURE__*/React__default.createElement(core.DialogActions, null, /*#__PURE__*/React__default.createElement(core.Button, {
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onClick: function onClick() {
|
|
8073
8092
|
model.setMaxHeight(max !== '' && !Number.isNaN(+max) ? +max : undefined);
|
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8074
8093
|
handleClose();
|
|
8075
8094
|
}
|
|
8076
|
-
}, "Submit")
|
|
8095
|
+
}, "Submit"), /*#__PURE__*/React__default.createElement(core.Button, {
|
|
8096
|
+
variant: "contained",
|
|
8097
|
+
color: "secondary",
|
|
8098
|
+
onClick: function onClick() {
|
|
8099
|
+
return handleClose();
|
|
8100
|
+
}
|
|
8101
|
+
}, "Cancel"))));
|
|
8077
8102
|
}
|
|
8078
8103
|
|
|
8079
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|
var SetMaxHeight = /*#__PURE__*/mobxReact.observer(SetMaxHeightDlg$1);
|