@jbrowse/plugin-linear-genome-view 1.6.5 → 1.6.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (30) hide show
  1. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  2. package/dist/LinearBareDisplay/configSchema.d.ts +1 -1
  3. package/dist/LinearBareDisplay/model.d.ts +7 -7
  4. package/dist/LinearBasicDisplay/configSchema.d.ts +1 -1
  5. package/dist/LinearBasicDisplay/model.d.ts +7 -7
  6. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +6 -6
  7. package/dist/LinearGenomeView/components/TrackContainer.d.ts +1 -1
  8. package/dist/index.d.ts +22 -22
  9. package/dist/plugin-linear-genome-view.cjs.development.js +157 -242
  10. package/dist/plugin-linear-genome-view.cjs.development.js.map +1 -1
  11. package/dist/plugin-linear-genome-view.cjs.production.min.js +1 -1
  12. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +1 -1
  13. package/dist/plugin-linear-genome-view.esm.js +158 -243
  14. package/dist/plugin-linear-genome-view.esm.js.map +1 -1
  15. package/package.json +2 -2
  16. package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +10 -13
  17. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +6 -1
  18. package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +21 -12
  19. package/src/LinearBasicDisplay/model.ts +1 -1
  20. package/src/LinearGenomeView/components/HelpDialog.tsx +14 -1
  21. package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +1 -13
  22. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +7 -3
  23. package/src/LinearGenomeView/components/TrackContainer.tsx +34 -30
  24. package/src/LinearGenomeView/components/TracksContainer.tsx +0 -1
  25. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +32 -61
  26. package/src/LinearGenomeView/index.test.ts +44 -42
  27. package/src/LinearGenomeView/index.tsx +55 -131
  28. package/src/LinearGenomeView/volvoxDisplayedRegions.json +16 -0
  29. package/dist/LinearGenomeView/components/ReturnToImportFormDialog.d.ts +0 -9
  30. package/src/LinearGenomeView/components/ReturnToImportFormDialog.tsx +0 -83
package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts CHANGED
@@ -1 +1 @@
1
- export declare const baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
1
+ export declare const baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
package/dist/LinearBareDisplay/configSchema.d.ts CHANGED
@@ -1,2 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- export declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
2
+ export declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
package/dist/LinearBareDisplay/model.d.ts CHANGED
@@ -25,7 +25,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  renderInProgress: AbortController | undefined;
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  filled: boolean;
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  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
28
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
28
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
29
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  layout: any;
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  status: string;
31
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  error: unknown;
@@ -43,7 +43,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
43
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  setMessage(messageText: string): void;
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  setRendered(props: {
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  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
46
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature>;
46
+ features: Map<string, import("@jbrowse/core/util").Feature>;
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  layout: any;
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  maxHeightReached: boolean;
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  renderProps: any;
@@ -113,7 +113,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  currBpPerPx: number;
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  message: string;
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  featureIdUnderMouse: string | undefined;
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- contextMenuFeature: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
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+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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  scrollTop: number;
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  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
@@ -126,8 +126,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  readonly selectedFeatureId: string | undefined;
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  readonly DisplayMessageComponent: import("react").FC<any> | undefined;
128
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  } & {
129
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util/simpleFeature").Feature>;
130
- readonly featureUnderMouse: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
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+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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  getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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  searchFeatureByID(id: string): [number, number, number, number] | undefined;
@@ -154,11 +154,11 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  setCurrBpPerPx(n: number): void;
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  deleteBlock(key: string): void;
157
- selectFeature(feature: import("@jbrowse/core/util/simpleFeature").Feature): void;
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+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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  clearFeatureSelection(): void;
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  setFeatureIdUnderMouse(feature: string | undefined): void;
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  reload(): void;
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- setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
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+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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  } & {
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  readonly regionTooLarge: boolean;
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  readonly regionTooLargeReason: string;
package/dist/LinearBasicDisplay/configSchema.d.ts CHANGED
@@ -1,2 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
2
+ export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
package/dist/LinearBasicDisplay/model.d.ts CHANGED
@@ -27,7 +27,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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  renderInProgress: AbortController | undefined;
28
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  filled: boolean;
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  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
30
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
30
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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  layout: any;
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  status: string;
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  error: unknown;
@@ -45,7 +45,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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  setMessage(messageText: string): void;
46
46
  setRendered(props: {
47
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  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
48
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature>;
48
+ features: Map<string, import("@jbrowse/core/util").Feature>;
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  layout: any;
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  maxHeightReached: boolean;
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  renderProps: any;
@@ -119,7 +119,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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  currBpPerPx: number;
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  message: string;
121
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  featureIdUnderMouse: string | undefined;
122
- contextMenuFeature: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
122
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
123
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  scrollTop: number;
124
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  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
125
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  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
@@ -132,8 +132,8 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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  readonly selectedFeatureId: string | undefined;
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  readonly DisplayMessageComponent: import("react").FC<any> | undefined;
134
134
  } & {
135
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util/simpleFeature").Feature>;
136
- readonly featureUnderMouse: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
135
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
136
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
137
137
  getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
139
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  searchFeatureByID(id: string): [number, number, number, number] | undefined;
@@ -160,11 +160,11 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
160
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
161
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  setCurrBpPerPx(n: number): void;
162
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  deleteBlock(key: string): void;
163
- selectFeature(feature: import("@jbrowse/core/util/simpleFeature").Feature): void;
163
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
164
164
  clearFeatureSelection(): void;
165
165
  setFeatureIdUnderMouse(feature: string | undefined): void;
166
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  reload(): void;
167
- setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
167
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
168
168
  } & {
169
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  readonly regionTooLarge: boolean;
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  readonly regionTooLargeReason: string;
package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts CHANGED
@@ -20,7 +20,7 @@ declare const Cytobands: ({ overview, block, assembly, }: {
20
20
  refNameAliases: {
21
21
  [key: string]: string;
22
22
  } | undefined;
23
- cytobands: import("@jbrowse/core/util/simpleFeature").Feature[] | undefined;
23
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
24
24
  } & {
25
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  readonly initialized: boolean;
26
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  readonly name: string;
@@ -40,12 +40,12 @@ declare const Cytobands: ({ overview, block, assembly, }: {
40
40
  setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
41
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  adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
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  refNameAliases: Record<string, string>;
43
- cytobands: import("@jbrowse/core/util/simpleFeature").Feature[];
43
+ cytobands: import("@jbrowse/core/util").Feature[];
44
44
  }): void;
45
45
  setError(e: Error): void;
46
46
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
47
47
  setRefNameAliases(refNameAliases: Record<string, string>): void;
48
- setCytobands(cytobands: import("@jbrowse/core/util/simpleFeature").Feature[]): void;
48
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
49
49
  afterAttach(): void;
50
50
  } & {
51
51
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
@@ -70,7 +70,7 @@ declare const Cytobands: ({ overview, block, assembly, }: {
70
70
  refNameAliases: {
71
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  [key: string]: string;
72
72
  } | undefined;
73
- cytobands: import("@jbrowse/core/util/simpleFeature").Feature[] | undefined;
73
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
74
74
  } & {
75
75
  readonly initialized: boolean;
76
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  readonly name: string;
@@ -90,12 +90,12 @@ declare const Cytobands: ({ overview, block, assembly, }: {
90
90
  setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
91
91
  adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
92
92
  refNameAliases: Record<string, string>;
93
- cytobands: import("@jbrowse/core/util/simpleFeature").Feature[];
93
+ cytobands: import("@jbrowse/core/util").Feature[];
94
94
  }): void;
95
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  setError(e: Error): void;
96
96
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
97
97
  setRefNameAliases(refNameAliases: Record<string, string>): void;
98
- setCytobands(cytobands: import("@jbrowse/core/util/simpleFeature").Feature[]): void;
98
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
99
99
  afterAttach(): void;
100
100
  } & {
101
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  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
package/dist/LinearGenomeView/components/TrackContainer.d.ts CHANGED
@@ -1,7 +1,7 @@
1
1
  /// <reference types="react" />
2
2
  import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
3
3
  import { LinearGenomeViewModel } from '..';
4
- declare function TrackContainer(props: {
4
+ declare function TrackContainer({ model, track, }: {
5
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  model: LinearGenomeViewModel;
6
6
  track: BaseTrackModel;
7
7
  }): JSX.Element;
package/dist/index.d.ts CHANGED
@@ -34,7 +34,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
34
34
  renderInProgress: AbortController | undefined;
35
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  filled: boolean;
36
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  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
37
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
37
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
38
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  layout: any;
39
39
  status: string;
40
40
  error: unknown;
@@ -52,7 +52,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
52
52
  setMessage(messageText: string): void;
53
53
  setRendered(props: {
54
54
  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
55
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature>;
55
+ features: Map<string, import("@jbrowse/core/util").Feature>;
56
56
  layout: any;
57
57
  maxHeightReached: boolean;
58
58
  renderProps: any;
@@ -119,7 +119,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
119
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  currBpPerPx: number;
120
120
  message: string;
121
121
  featureIdUnderMouse: string | undefined;
122
- contextMenuFeature: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
122
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
123
123
  scrollTop: number;
124
124
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
125
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  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
@@ -132,8 +132,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
132
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  readonly selectedFeatureId: string | undefined;
133
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  readonly DisplayMessageComponent: import("react").FC<any> | undefined;
134
134
  } & {
135
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util/simpleFeature").Feature>;
136
- readonly featureUnderMouse: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
135
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
136
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
137
137
  getFeatureOverlapping(blockKey: string, x: number, y: number): any;
138
138
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
139
139
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
@@ -160,11 +160,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
160
160
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
161
161
  setCurrBpPerPx(n: number): void;
162
162
  deleteBlock(key: string): void;
163
- selectFeature(feature: import("@jbrowse/core/util/simpleFeature").Feature): void;
163
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
164
164
  clearFeatureSelection(): void;
165
165
  setFeatureIdUnderMouse(feature: string | undefined): void;
166
166
  reload(): void;
167
- setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
167
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
168
168
  } & {
169
169
  readonly regionTooLarge: boolean;
170
170
  readonly regionTooLargeReason: string;
@@ -210,7 +210,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
210
210
  renderInProgress: AbortController | undefined;
211
211
  filled: boolean;
212
212
  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
213
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
213
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
214
214
  layout: any;
215
215
  status: string;
216
216
  error: unknown;
@@ -228,7 +228,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
228
228
  setMessage(messageText: string): void;
229
229
  setRendered(props: {
230
230
  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
231
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature>;
231
+ features: Map<string, import("@jbrowse/core/util").Feature>;
232
232
  layout: any;
233
233
  maxHeightReached: boolean;
234
234
  renderProps: any;
@@ -295,7 +295,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
295
295
  currBpPerPx: number;
296
296
  message: string;
297
297
  featureIdUnderMouse: string | undefined;
298
- contextMenuFeature: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
298
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
299
299
  scrollTop: number;
300
300
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
301
301
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
@@ -308,8 +308,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
308
308
  readonly selectedFeatureId: string | undefined;
309
309
  readonly DisplayMessageComponent: import("react").FC<any> | undefined;
310
310
  } & {
311
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util/simpleFeature").Feature>;
312
- readonly featureUnderMouse: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
311
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
312
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
313
313
  getFeatureOverlapping(blockKey: string, x: number, y: number): any;
314
314
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
315
315
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
@@ -336,11 +336,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
336
336
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
337
337
  setCurrBpPerPx(n: number): void;
338
338
  deleteBlock(key: string): void;
339
- selectFeature(feature: import("@jbrowse/core/util/simpleFeature").Feature): void;
339
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
340
340
  clearFeatureSelection(): void;
341
341
  setFeatureIdUnderMouse(feature: string | undefined): void;
342
342
  reload(): void;
343
- setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
343
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
344
344
  } & {
345
345
  readonly regionTooLarge: boolean;
346
346
  readonly regionTooLargeReason: string;
@@ -396,7 +396,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
396
396
  renderInProgress: AbortController | undefined;
397
397
  filled: boolean;
398
398
  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
399
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
399
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
400
400
  layout: any;
401
401
  status: string;
402
402
  error: unknown;
@@ -414,7 +414,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
414
414
  setMessage(messageText: string): void;
415
415
  setRendered(props: {
416
416
  reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
417
- features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature>;
417
+ features: Map<string, import("@jbrowse/core/util").Feature>;
418
418
  layout: any;
419
419
  maxHeightReached: boolean;
420
420
  renderProps: any;
@@ -481,7 +481,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
481
481
  currBpPerPx: number;
482
482
  message: string;
483
483
  featureIdUnderMouse: string | undefined;
484
- contextMenuFeature: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
484
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
485
485
  scrollTop: number;
486
486
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
487
487
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
@@ -494,8 +494,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
494
494
  readonly selectedFeatureId: string | undefined;
495
495
  readonly DisplayMessageComponent: import("react").FC<any> | undefined;
496
496
  } & {
497
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util/simpleFeature").Feature>;
498
- readonly featureUnderMouse: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
497
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
498
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
499
499
  getFeatureOverlapping(blockKey: string, x: number, y: number): any;
500
500
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
501
501
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
@@ -522,11 +522,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
522
522
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
523
523
  setCurrBpPerPx(n: number): void;
524
524
  deleteBlock(key: string): void;
525
- selectFeature(feature: import("@jbrowse/core/util/simpleFeature").Feature): void;
525
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
526
526
  clearFeatureSelection(): void;
527
527
  setFeatureIdUnderMouse(feature: string | undefined): void;
528
528
  reload(): void;
529
- setContextMenuFeature(feature?: import("@jbrowse/core/util/simpleFeature").Feature | undefined): void;
529
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
530
530
  } & {
531
531
  readonly regionTooLarge: boolean;
532
532
  readonly regionTooLargeReason: string;
@@ -555,7 +555,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
555
555
  userBpPerPxLimit: number | undefined;
556
556
  userByteSizeLimit: number | undefined;
557
557
  }>;
558
- baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
558
+ baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
559
559
  };
560
560
  install(pluginManager: PluginManager): void;
561
561
  configure(pluginManager: PluginManager): void;