@jbrowse/plugin-linear-genome-view 1.3.4 → 1.5.0

package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts

@@ -1,9 +1,10 @@
 import React from 'react';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
-declare const Tooltip: (props: {
+declare const Tooltip: ({ model, clientMouseCoord, }: {
     model: BaseLinearDisplayModel;
-    mouseCoord: [number, number];
+    clientMouseCoord: Coord;
 }) => JSX.Element | null;
+declare type Coord = [number, number];
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts

@@ -13,6 +13,7 @@ export interface Layout {
     maxY: number;
     name: string;
 }
+declare type LayoutRecord = [number, number, number, number];
 export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -41,7 +42,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         features: Map<string, Feature> | undefined;
         layout: any;
         status: string;
-        error: Error | undefined;
+        error: unknown;
         message: string | undefined;
         maxHeightReached: boolean;
         ReactComponent: ({ model, }: {
@@ -52,23 +53,30 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void;
+        setLoading(abortController: AbortController): void; /**
+         * returns a string feature ID if the globally-selected object
+         * is probably a feature
+         */
         setMessage(messageText: string): void;
         setRendered(props: {
             reactElement: React.ReactElement<any, string | ((props: any) => React.ReactElement<any, any> | null) | (new (props: any) => React.Component<any, any, any>)>;
             features: Map<string, Feature>;
             layout: any;
+            /**
+             * a CompositeMap of `featureId -> feature obj` that
+             * just looks in all the block data for that feature
+             */
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
-        setError(error: Error): void;
+        setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 }, {
     rendererTypeName: string;
-    error: Error | undefined;
+    error: unknown;
 } & {
     readonly RenderingComponent: React.FC<{
         model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -77,14 +85,14 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }> & {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: Function | undefined;
         blockState?: Record<string, any> | undefined;
@@ -96,14 +104,14 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }> & {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -115,7 +123,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     readonly viewMenuActions: MenuItem[];
     regionCannotBeRendered(): undefined;
 } & {
-    setError(error?: Error | undefined): void;
+    setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
@@ -155,7 +163,8 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     readonly features: CompositeMap<string, Feature>;
     readonly featureUnderMouse: Feature | undefined;
     getFeatureOverlapping(blockKey: string, x: number, y: number): any;
-    getFeatureByID(id: string): [number, number, number, number] | undefined;
+    getFeatureByID(blockKey: string, id: string): LayoutRecord | undefined;
+    searchFeatureByID(id: string): LayoutRecord | undefined;
 } & {
     afterAttach(): void;
     setHeight(displayHeight: number): number;
@@ -200,3 +209,4 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
 }>;
 export declare type BaseLinearDisplayStateModel = typeof BaseLinearDisplay;
 export declare type BaseLinearDisplayModel = Instance<BaseLinearDisplayStateModel>;
+export {};

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts

@@ -24,7 +24,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
     features: Map<string, Feature> | undefined;
     layout: any;
     status: string;
-    error: Error | undefined;
+    error: unknown;
     message: string | undefined;
     maxHeightReached: boolean;
     ReactComponent: ({ model, }: {
@@ -44,7 +44,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
         maxHeightReached: boolean;
         renderProps: any;
     } | undefined): void;
-    setError(error: Error): void;
+    setError(error: Error | unknown): void;
     reload(): void;
     beforeDestroy(): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/LinearBareDisplay/model.d.ts

@@ -28,7 +28,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
         layout: any;
         status: string;
-        error: Error | undefined;
+        error: unknown;
         message: string | undefined;
         maxHeightReached: boolean;
         ReactComponent: ({ model, }: {
@@ -48,7 +48,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
-        setError(error: Error): void;
+        setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -58,7 +58,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
 }, {
     rendererTypeName: string;
-    error: Error | undefined;
+    error: unknown;
 } & {
     readonly RenderingComponent: import("react").FC<{
         model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -67,14 +67,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }> & {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: Function | undefined;
         blockState?: Record<string, any> | undefined;
@@ -86,14 +86,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }> & {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -105,7 +105,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): undefined;
 } & {
-    setError(error?: Error | undefined): void;
+    setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
@@ -126,7 +126,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util/simpleFeature").Feature>;
     readonly featureUnderMouse: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
     getFeatureOverlapping(blockKey: string, x: number, y: number): any;
-    getFeatureByID(id: string): [number, number, number, number] | undefined;
+    getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+    searchFeatureByID(id: string): [number, number, number, number] | undefined;
 } & {
     afterAttach(): void;
     setHeight(displayHeight: number): number;

package/dist/LinearBasicDisplay/model.d.ts

@@ -30,7 +30,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
         features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
         layout: any;
         status: string;
-        error: Error | undefined;
+        error: unknown;
         message: string | undefined;
         maxHeightReached: boolean;
         ReactComponent: ({ model, }: {
@@ -50,7 +50,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
-        setError(error: Error): void;
+        setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -58,12 +58,13 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
 } & {
     type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
     trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
 }, {
     rendererTypeName: string;
-    error: Error | undefined;
+    error: unknown;
 } & {
     readonly RenderingComponent: import("react").FC<{
         model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -72,14 +73,14 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }> & {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: Function | undefined;
         blockState?: Record<string, any> | undefined;
@@ -91,14 +92,14 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }> & {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
-            error: Error | undefined;
+            error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -110,7 +111,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
     readonly viewMenuActions: MenuItem[];
     regionCannotBeRendered(): undefined;
 } & {
-    setError(error?: Error | undefined): void;
+    setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
@@ -131,7 +132,8 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
     readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util/simpleFeature").Feature>;
     readonly featureUnderMouse: import("@jbrowse/core/util/simpleFeature").Feature | undefined;
     getFeatureOverlapping(blockKey: string, x: number, y: number): any;
-    getFeatureByID(id: string): [number, number, number, number] | undefined;
+    getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+    searchFeatureByID(id: string): [number, number, number, number] | undefined;
 } & {
     afterAttach(): void;
     setHeight(displayHeight: number): number;
@@ -163,11 +165,13 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
 } & {
     readonly rendererTypeName: any;
     readonly showLabels: any;
+    readonly showDescriptions: any;
     readonly maxHeight: any;
     readonly displayMode: any;
     readonly rendererConfig: any;
 } & {
     toggleShowLabels(): void;
+    toggleShowDescriptions(): void;
     setDisplayMode(val: string): void;
     setMaxHeight(val: number): void;
 } & {

package/dist/LinearGenomeView/components/Header.d.ts

@@ -1,8 +1,6 @@
 /// <reference types="react" />
-import { Instance } from 'mobx-state-tree';
-import { LinearGenomeViewStateModel } from '..';
-declare type LGV = Instance<LinearGenomeViewStateModel>;
+import { LinearGenomeViewModel } from '..';
 declare const LinearGenomeViewHeader: ({ model }: {
-    model: LGV;
+    model: LinearGenomeViewModel;
 }) => JSX.Element;
 export default LinearGenomeViewHeader;

package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts

@@ -1,17 +1,7 @@
-/**
- * Based on:
- *  https://material-ui.com/components/autocomplete/#Virtualize.tsx
- * Asynchronous Requests for autocomplete:
- *  https://material-ui.com/components/autocomplete/
- */
 import React from 'react';
 import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-import { TextFieldProps as TFP } from '@material-ui/core/TextField';
+import { TextFieldProps as TFP } from '@material-ui/core';
 import { LinearGenomeViewModel } from '..';
-/**
- *  Option interface used to format results to display in dropdown
- *  of the materila ui interface
- */
 export interface Option {
     group?: string;
     result: BaseResult;

package/dist/LinearGenomeView/components/ScaleBar.d.ts

@@ -27,7 +27,7 @@ declare const _default: React.ForwardRefExoticComponent<{
     }> & {
         width: number;
     } & {
-        readonly menuItems: import("@jbrowse/core/ui").MenuItem[];
+        menuItems(): import("@jbrowse/core/ui").MenuItem[];
     } & {
         setDisplayName(name: string): void;
         setWidth(newWidth: number): void;
@@ -35,7 +35,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         volatileWidth: number | undefined;
         minimumBlockWidth: number;
         draggingTrackId: string | undefined;
-        error: Error | undefined;
+        volatileError: Error | undefined;
         afterDisplayedRegionsSetCallbacks: Function[];
         scaleFactor: number;
         trackRefs: {
@@ -47,26 +47,29 @@ declare const _default: React.ForwardRefExoticComponent<{
         rightOffset: import("..").BpOffset | undefined;
         searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
         searchQuery: string | undefined;
+        seqDialogDisplayed: boolean;
     } & {
         readonly width: number;
+        readonly interRegionPaddingWidth: number;
     } & {
+        readonly assemblyErrors: string;
+        readonly assembliesInitialized: boolean;
         readonly initialized: boolean;
         readonly hasDisplayedRegions: boolean;
-        readonly isSeqDialogDisplayed: import("..").BpOffset | undefined;
         readonly isSearchDialogDisplayed: boolean;
         readonly scaleBarHeight: number;
         readonly headerHeight: number;
         readonly trackHeights: any;
         readonly trackHeightsWithResizeHandles: any;
         readonly height: any;
-        readonly interRegionPaddingWidth: number;
         readonly totalBp: number;
         readonly maxBpPerPx: number;
         readonly minBpPerPx: number;
+        readonly error: string | Error;
         readonly maxOffset: number;
         readonly minOffset: number;
         readonly displayedRegionsTotalPx: number;
-        readonly renderProps: any;
+        renderProps(): any;
         readonly assemblyNames: string[];
         searchScope(assemblyName: string): {
             assemblyName: string;
@@ -116,6 +119,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         zoomTo(bpPerPx: number): number;
         setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
         setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
+        setSequenceDialogOpen(open: boolean): void;
         setNewView(bpPerPx: number, offsetPx: number): void;
         horizontallyFlip(): void;
         showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -127,7 +131,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         setTrackLabels(setting: "overlapping" | "hidden" | "offset"): void;
         toggleCenterLine(): void;
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        activateTrackSelector(): void;
+        activateTrackSelector(): import("@jbrowse/core/util").Widget;
         navToLocString(locString: string, optAssemblyName?: string | undefined): void;
         navTo(query: import("..").NavLocation): void;
         navToMultiple(locations: import("..").NavLocation[]): void;
@@ -135,10 +139,15 @@ declare const _default: React.ForwardRefExoticComponent<{
         getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
             start: number;
             end: number;
+            regionNumber?: number | undefined;
+            reversed?: boolean | undefined;
             refName: string;
             assemblyName: string;
             key: string;
             offsetPx: number;
+            widthPx: number;
+            variant?: string | undefined;
+            isLeftEndOfDisplayedRegion?: boolean | undefined;
         }[];
         afterDisplayedRegionsSet(cb: Function): void;
         moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
@@ -154,16 +163,21 @@ declare const _default: React.ForwardRefExoticComponent<{
     } & {
         zoom: (targetBpPerPx: number) => void;
     } & {
-        readonly menuItems: import("@jbrowse/core/ui").MenuItem[];
+        menuItems(): import("@jbrowse/core/ui").MenuItem[];
         readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly roundedDynamicBlocks: {
             start: number;
             end: number;
+            regionNumber?: number | undefined;
+            reversed?: boolean | undefined;
             refName: string;
             assemblyName: string;
             key: string;
             offsetPx: number;
+            widthPx: number;
+            variant?: string | undefined;
+            isLeftEndOfDisplayedRegion?: boolean | undefined;
         }[];
         readonly visibleLocStrings: string;
         readonly coarseVisibleLocStrings: string;
@@ -173,6 +187,8 @@ declare const _default: React.ForwardRefExoticComponent<{
         afterAttach(): void;
     } & {
         exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
+    } & {
+        rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
         displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -200,7 +216,7 @@ declare const _default: React.ForwardRefExoticComponent<{
     }, {
         width: number;
     } & {
-        readonly menuItems: import("@jbrowse/core/ui").MenuItem[];
+        menuItems(): import("@jbrowse/core/ui").MenuItem[];
     } & {
         setDisplayName(name: string): void;
         setWidth(newWidth: number): void;
@@ -208,7 +224,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         volatileWidth: number | undefined;
         minimumBlockWidth: number;
         draggingTrackId: string | undefined;
-        error: Error | undefined;
+        volatileError: Error | undefined;
         afterDisplayedRegionsSetCallbacks: Function[];
         scaleFactor: number;
         trackRefs: {
@@ -220,26 +236,29 @@ declare const _default: React.ForwardRefExoticComponent<{
         rightOffset: import("..").BpOffset | undefined;
         searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
         searchQuery: string | undefined;
+        seqDialogDisplayed: boolean;
     } & {
         readonly width: number;
+        readonly interRegionPaddingWidth: number;
     } & {
+        readonly assemblyErrors: string;
+        readonly assembliesInitialized: boolean;
         readonly initialized: boolean;
         readonly hasDisplayedRegions: boolean;
-        readonly isSeqDialogDisplayed: import("..").BpOffset | undefined;
         readonly isSearchDialogDisplayed: boolean;
         readonly scaleBarHeight: number;
         readonly headerHeight: number;
         readonly trackHeights: any;
         readonly trackHeightsWithResizeHandles: any;
         readonly height: any;
-        readonly interRegionPaddingWidth: number;
         readonly totalBp: number;
         readonly maxBpPerPx: number;
         readonly minBpPerPx: number;
+        readonly error: string | Error;
         readonly maxOffset: number;
         readonly minOffset: number;
         readonly displayedRegionsTotalPx: number;
-        readonly renderProps: any;
+        renderProps(): any;
         readonly assemblyNames: string[];
         searchScope(assemblyName: string): {
             assemblyName: string;
@@ -289,6 +308,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         zoomTo(bpPerPx: number): number;
         setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
         setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
+        setSequenceDialogOpen(open: boolean): void;
         setNewView(bpPerPx: number, offsetPx: number): void;
         horizontallyFlip(): void;
         showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -300,7 +320,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         setTrackLabels(setting: "overlapping" | "hidden" | "offset"): void;
         toggleCenterLine(): void;
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        activateTrackSelector(): void;
+        activateTrackSelector(): import("@jbrowse/core/util").Widget;
         navToLocString(locString: string, optAssemblyName?: string | undefined): void;
         navTo(query: import("..").NavLocation): void;
         navToMultiple(locations: import("..").NavLocation[]): void;
@@ -308,10 +328,15 @@ declare const _default: React.ForwardRefExoticComponent<{
         getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
             start: number;
             end: number;
+            regionNumber?: number | undefined;
+            reversed?: boolean | undefined;
             refName: string;
             assemblyName: string;
             key: string;
             offsetPx: number;
+            widthPx: number;
+            variant?: string | undefined;
+            isLeftEndOfDisplayedRegion?: boolean | undefined;
         }[];
         afterDisplayedRegionsSet(cb: Function): void;
         moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
@@ -327,16 +352,21 @@ declare const _default: React.ForwardRefExoticComponent<{
     } & {
         zoom: (targetBpPerPx: number) => void;
     } & {
-        readonly menuItems: import("@jbrowse/core/ui").MenuItem[];
+        menuItems(): import("@jbrowse/core/ui").MenuItem[];
         readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly roundedDynamicBlocks: {
             start: number;
             end: number;
+            regionNumber?: number | undefined;
+            reversed?: boolean | undefined;
             refName: string;
             assemblyName: string;
             key: string;
             offsetPx: number;
+            widthPx: number;
+            variant?: string | undefined;
+            isLeftEndOfDisplayedRegion?: boolean | undefined;
         }[];
         readonly visibleLocStrings: string;
         readonly coarseVisibleLocStrings: string;
@@ -346,6 +376,8 @@ declare const _default: React.ForwardRefExoticComponent<{
         afterAttach(): void;
     } & {
         exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
+    } & {
+        rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     style?: React.CSSProperties | undefined;
     className?: string | undefined;

package/dist/LinearGenomeView/components/util.d.ts

@@ -0,0 +1,2 @@
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
+export declare function dedupe(results?: BaseResult[]): BaseResult[] | undefined;

package/dist/LinearGenomeView/index.d.ts

@@ -5,6 +5,7 @@ import { BlockSet, BaseBlock } from '@jbrowse/core/util/blockTypes';
 import { Instance } from 'mobx-state-tree';
 import PluginManager from '@jbrowse/core/PluginManager';
 import { renderToSvg } from './components/LinearGenomeView';
+import RefNameAutocomplete from './components/RefNameAutocomplete';
 export { default as ReactComponent } from './components/LinearGenomeView';
 export interface BpOffset {
     refName?: string;
@@ -174,7 +175,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     setTrackLabels(setting: 'overlapping' | 'offset' | 'hidden'): void;
     toggleCenterLine(): void;
     setDisplayedRegions(regions: Region[]): void;
-    activateTrackSelector(): void;
+    activateTrackSelector(): import("@jbrowse/core/util").Widget;
     navToLocString(locString: string, optAssemblyName?: string | undefined): void;
     /**
      * Navigate to a location based on its refName and optionally start, end,
@@ -210,10 +211,15 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     getSelectedRegions(leftOffset: BpOffset | undefined, rightOffset: BpOffset | undefined): {
         start: number;
         end: number;
+        regionNumber?: number | undefined;
+        reversed?: boolean | undefined;
         refName: string;
         assemblyName: string;
         key: string;
         offsetPx: number;
+        widthPx: number;
+        variant?: string | undefined;
+        isLeftEndOfDisplayedRegion?: boolean | undefined;
     }[];
     afterDisplayedRegionsSet(cb: Function): void;
     /**
@@ -249,10 +255,15 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     readonly roundedDynamicBlocks: {
         start: number;
         end: number;
+        regionNumber?: number | undefined;
+        reversed?: boolean | undefined;
         refName: string;
         assemblyName: string;
         key: string;
         offsetPx: number;
+        widthPx: number;
+        variant?: string | undefined;
+        isLeftEndOfDisplayedRegion?: boolean | undefined;
     }[];
     readonly visibleLocStrings: string;
     readonly coarseVisibleLocStrings: string;
@@ -265,6 +276,6 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
 } & {
     rubberBandMenuItems(): MenuItem[];
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export { renderToSvg };
+export { renderToSvg, RefNameAutocomplete };
 export declare type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;
 export declare type LinearGenomeViewModel = Instance<LinearGenomeViewStateModel>;