@jbrowse/plugin-linear-comparative-view 4.0.4 → 4.1.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -34,10 +34,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}, {
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width: number;
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} & {
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@@ -57,10 +57,11 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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trackRefs: Record<string, HTMLDivElement>;
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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isScalebarRefNameMenuOpen: boolean;
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scalebarRefNameClickPending: boolean;
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volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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} & {
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readonly pinnedTracks: any[];
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readonly unpinnedTracks: any[];
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@@ -120,12 +121,13 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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setHideHeaderOverview(b: boolean): void;
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setHideNoTracksActive(b: boolean): void;
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setShowGridlines(b: boolean): void;
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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scrollTo(offsetPx: number): number;
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zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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setNewView(bpPerPx: number, offsetPx: number): void;
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horizontallyFlip(): void;
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@@ -142,7 +144,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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setShowCenterLine(b: boolean): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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assemblyName: string;
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refName: string;
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start: number;
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@@ -157,8 +159,8 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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setScaleFactor(factor: number): void;
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setTargetBpPerPx(target: number | undefined): void;
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clearView(): void;
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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} & {
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slide: (viewWidths: number) => void;
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} & {
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@@ -183,7 +185,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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} & {
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setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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} & {
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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navToSearchString({ input, assembly, }: {
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input: string;
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@@ -191,8 +193,8 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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}): Promise<void>;
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navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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navTo(query: import("@jbrowse/plugin-linear-genome-view
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
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navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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} & {
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rubberBandMenuItems(): MenuItem[];
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bpToPx({ refName, coord, regionNumber, }: {
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@@ -228,7 +230,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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} | undefined;
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readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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} & {
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): MenuItem[];
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} & {
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afterCreate(): void;
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afterAttach(): void;
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@@ -251,10 +253,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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@@ -274,10 +276,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}>>>;
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viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
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}, {
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@@ -355,10 +357,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}, {
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width: number;
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} & {
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@@ -378,10 +380,11 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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trackRefs: Record<string, HTMLDivElement>;
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
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isScalebarRefNameMenuOpen: boolean;
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scalebarRefNameClickPending: boolean;
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volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
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} & {
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readonly pinnedTracks: any[];
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readonly unpinnedTracks: any[];
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setHideHeaderOverview(b: boolean): void;
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setHideNoTracksActive(b: boolean): void;
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setShowGridlines(b: boolean): void;
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
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addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
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removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
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setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
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scrollTo(offsetPx: number): number;
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zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
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setNewView(bpPerPx: number, offsetPx: number): void;
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horizontallyFlip(): void;
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setShowCenterLine(b: boolean): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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assemblyName: string;
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refName: string;
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start: number;
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setScaleFactor(factor: number): void;
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setTargetBpPerPx(target: number | undefined): void;
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clearView(): void;
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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} & {
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slide: (viewWidths: number) => void;
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} & {
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} & {
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setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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} & {
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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navToSearchString({ input, assembly, }: {
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input: string;
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@@ -512,8 +516,8 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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}): Promise<void>;
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navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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-
navTo(query: import("@jbrowse/plugin-linear-genome-view
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
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+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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} & {
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rubberBandMenuItems(): MenuItem[];
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bpToPx({ refName, coord, regionNumber, }: {
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@@ -549,7 +553,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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} | undefined;
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readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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} & {
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-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
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+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): MenuItem[];
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} & {
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afterCreate(): void;
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afterAttach(): void;
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@@ -572,10 +576,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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575
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-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
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579
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+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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577
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
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578
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
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|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
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@@ -595,10 +599,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
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598
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
602
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
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601
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
605
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
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602
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|
}>>>;
|
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603
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|
viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
604
608
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
@@ -633,10 +637,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
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|
633
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
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634
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|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
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635
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|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
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636
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
640
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
637
641
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
638
642
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
639
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
643
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
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640
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|
}, {
|
|
641
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|
width: number;
|
|
642
646
|
} & {
|
|
@@ -656,10 +660,11 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
656
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|
trackRefs: Record<string, HTMLDivElement>;
|
|
657
661
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
658
662
|
coarseTotalBp: number;
|
|
659
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
660
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
663
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
664
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
661
665
|
isScalebarRefNameMenuOpen: boolean;
|
|
662
666
|
scalebarRefNameClickPending: boolean;
|
|
667
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
663
668
|
} & {
|
|
664
669
|
readonly pinnedTracks: any[];
|
|
665
670
|
readonly unpinnedTracks: any[];
|
|
@@ -719,12 +724,13 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
719
724
|
setHideHeaderOverview(b: boolean): void;
|
|
720
725
|
setHideNoTracksActive(b: boolean): void;
|
|
721
726
|
setShowGridlines(b: boolean): void;
|
|
722
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
723
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
724
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
727
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
728
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
729
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
730
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
725
731
|
scrollTo(offsetPx: number): number;
|
|
726
732
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
727
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
733
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
728
734
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
729
735
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
730
736
|
horizontallyFlip(): void;
|
|
@@ -741,7 +747,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
741
747
|
setShowCenterLine(b: boolean): void;
|
|
742
748
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
743
749
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
744
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
750
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
745
751
|
assemblyName: string;
|
|
746
752
|
refName: string;
|
|
747
753
|
start: number;
|
|
@@ -756,8 +762,8 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
756
762
|
setScaleFactor(factor: number): void;
|
|
757
763
|
setTargetBpPerPx(target: number | undefined): void;
|
|
758
764
|
clearView(): void;
|
|
759
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
760
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
765
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
766
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
761
767
|
} & {
|
|
762
768
|
slide: (viewWidths: number) => void;
|
|
763
769
|
} & {
|
|
@@ -782,7 +788,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
782
788
|
} & {
|
|
783
789
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
784
790
|
} & {
|
|
785
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
791
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
786
792
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
787
793
|
navToSearchString({ input, assembly, }: {
|
|
788
794
|
input: string;
|
|
@@ -790,8 +796,8 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
790
796
|
}): Promise<void>;
|
|
791
797
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
792
798
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
793
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
794
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
799
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
800
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
795
801
|
} & {
|
|
796
802
|
rubberBandMenuItems(): MenuItem[];
|
|
797
803
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -827,7 +833,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
827
833
|
} | undefined;
|
|
828
834
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
829
835
|
} & {
|
|
830
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
836
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): MenuItem[];
|
|
831
837
|
} & {
|
|
832
838
|
afterCreate(): void;
|
|
833
839
|
afterAttach(): void;
|
|
@@ -850,10 +856,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
850
856
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
851
857
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
852
858
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
853
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
859
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
854
860
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
855
861
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
856
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
862
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
857
863
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
858
864
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
859
865
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -873,10 +879,10 @@ declare function stateModelFactory(pluginManager: PluginManager): import("@jbrow
|
|
|
873
879
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
874
880
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
875
881
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
876
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
882
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
877
883
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
878
884
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
879
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
885
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
880
886
|
}>>>;
|
|
881
887
|
viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
882
888
|
}>>;
|
|
@@ -34,10 +34,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
34
34
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
35
35
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
36
36
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
37
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
37
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
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getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
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setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
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exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view
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moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
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navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
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}): Promise<void>;
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navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
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navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
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navTo(query: import("@jbrowse/plugin-linear-genome-view
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
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navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
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navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
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} & {
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rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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bpToPx({ refName, coord, regionNumber, }: {
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} | undefined;
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readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
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rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
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afterCreate(): void;
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afterAttach(): void;
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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@@ -274,10 +276,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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}>>>;
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viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
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} & {
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@@ -470,10 +472,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
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475
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
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colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
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476
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
478
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
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477
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|
}, {
|
|
478
480
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width: number;
|
|
479
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|
} & {
|
|
@@ -493,10 +495,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
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493
495
|
trackRefs: Record<string, HTMLDivElement>;
|
|
494
496
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
495
497
|
coarseTotalBp: number;
|
|
496
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
497
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
498
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
499
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
498
500
|
isScalebarRefNameMenuOpen: boolean;
|
|
499
501
|
scalebarRefNameClickPending: boolean;
|
|
502
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
500
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|
} & {
|
|
501
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|
readonly pinnedTracks: any[];
|
|
502
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|
readonly unpinnedTracks: any[];
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|
@@ -556,12 +559,13 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
556
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|
setHideHeaderOverview(b: boolean): void;
|
|
557
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|
setHideNoTracksActive(b: boolean): void;
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|
558
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|
setShowGridlines(b: boolean): void;
|
|
559
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
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|
560
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
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|
561
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
562
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
563
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
564
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
565
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
562
566
|
scrollTo(offsetPx: number): number;
|
|
563
567
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
564
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
568
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
565
569
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
566
570
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
567
571
|
horizontallyFlip(): void;
|
|
@@ -578,7 +582,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
578
582
|
setShowCenterLine(b: boolean): void;
|
|
579
583
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
580
584
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
581
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
585
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
582
586
|
assemblyName: string;
|
|
583
587
|
refName: string;
|
|
584
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|
start: number;
|
|
@@ -593,8 +597,8 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
593
597
|
setScaleFactor(factor: number): void;
|
|
594
598
|
setTargetBpPerPx(target: number | undefined): void;
|
|
595
599
|
clearView(): void;
|
|
596
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
597
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
600
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
601
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
598
602
|
} & {
|
|
599
603
|
slide: (viewWidths: number) => void;
|
|
600
604
|
} & {
|
|
@@ -619,7 +623,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
619
623
|
} & {
|
|
620
624
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
621
625
|
} & {
|
|
622
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
626
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
623
627
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
624
628
|
navToSearchString({ input, assembly, }: {
|
|
625
629
|
input: string;
|
|
@@ -627,8 +631,8 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
627
631
|
}): Promise<void>;
|
|
628
632
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
629
633
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
630
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
631
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
634
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
635
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
632
636
|
} & {
|
|
633
637
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
634
638
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -664,7 +668,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
664
668
|
} | undefined;
|
|
665
669
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
666
670
|
} & {
|
|
667
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
671
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
668
672
|
} & {
|
|
669
673
|
afterCreate(): void;
|
|
670
674
|
afterAttach(): void;
|
|
@@ -687,10 +691,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
687
691
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
688
692
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
689
693
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
690
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
694
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
691
695
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
692
696
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
693
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
697
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
694
698
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
695
699
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
696
700
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -710,10 +714,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
710
714
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
711
715
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
712
716
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
713
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
717
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
714
718
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
715
719
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
716
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
720
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
717
721
|
}>>>;
|
|
718
722
|
viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
719
723
|
}>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
@@ -748,10 +752,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
748
752
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
749
753
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
750
754
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
751
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
755
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
752
756
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
753
757
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
754
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
758
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
755
759
|
}, {
|
|
756
760
|
width: number;
|
|
757
761
|
} & {
|
|
@@ -771,10 +775,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
771
775
|
trackRefs: Record<string, HTMLDivElement>;
|
|
772
776
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
773
777
|
coarseTotalBp: number;
|
|
774
|
-
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
775
|
-
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view
|
|
778
|
+
leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
779
|
+
rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view").BpOffset;
|
|
776
780
|
isScalebarRefNameMenuOpen: boolean;
|
|
777
781
|
scalebarRefNameClickPending: boolean;
|
|
782
|
+
volatileGuides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[];
|
|
778
783
|
} & {
|
|
779
784
|
readonly pinnedTracks: any[];
|
|
780
785
|
readonly unpinnedTracks: any[];
|
|
@@ -834,12 +839,13 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
834
839
|
setHideHeaderOverview(b: boolean): void;
|
|
835
840
|
setHideNoTracksActive(b: boolean): void;
|
|
836
841
|
setShowGridlines(b: boolean): void;
|
|
837
|
-
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
838
|
-
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view
|
|
839
|
-
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view
|
|
842
|
+
addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
843
|
+
setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view").HighlightType[]): void;
|
|
844
|
+
removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view").HighlightType): void;
|
|
845
|
+
setVolatileGuides(guides: import("@jbrowse/plugin-linear-genome-view").VolatileGuide[]): void;
|
|
840
846
|
scrollTo(offsetPx: number): number;
|
|
841
847
|
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
842
|
-
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view
|
|
848
|
+
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
843
849
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
|
|
844
850
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
845
851
|
horizontallyFlip(): void;
|
|
@@ -856,7 +862,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
856
862
|
setShowCenterLine(b: boolean): void;
|
|
857
863
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
858
864
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
859
|
-
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view
|
|
865
|
+
getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view").BpOffset): {
|
|
860
866
|
assemblyName: string;
|
|
861
867
|
refName: string;
|
|
862
868
|
start: number;
|
|
@@ -871,8 +877,8 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
871
877
|
setScaleFactor(factor: number): void;
|
|
872
878
|
setTargetBpPerPx(target: number | undefined): void;
|
|
873
879
|
clearView(): void;
|
|
874
|
-
setInit(arg?: import("@jbrowse/plugin-linear-genome-view
|
|
875
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view
|
|
880
|
+
setInit(arg?: import("@jbrowse/plugin-linear-genome-view").InitState): void;
|
|
881
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view").ExportSvgOptions): Promise<void>;
|
|
876
882
|
} & {
|
|
877
883
|
slide: (viewWidths: number) => void;
|
|
878
884
|
} & {
|
|
@@ -897,7 +903,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
897
903
|
} & {
|
|
898
904
|
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
899
905
|
} & {
|
|
900
|
-
moveTo(start?: import("@jbrowse/plugin-linear-genome-view
|
|
906
|
+
moveTo(start?: import("@jbrowse/plugin-linear-genome-view").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view").BpOffset): void;
|
|
901
907
|
navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
|
|
902
908
|
navToSearchString({ input, assembly, }: {
|
|
903
909
|
input: string;
|
|
@@ -905,8 +911,8 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
905
911
|
}): Promise<void>;
|
|
906
912
|
navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
|
|
907
913
|
navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
|
|
908
|
-
navTo(query: import("@jbrowse/plugin-linear-genome-view
|
|
909
|
-
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view
|
|
914
|
+
navTo(query: import("@jbrowse/plugin-linear-genome-view").NavLocation, grow?: number): void;
|
|
915
|
+
navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view").NavLocation[], grow?: number): void;
|
|
910
916
|
} & {
|
|
911
917
|
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
912
918
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
@@ -942,7 +948,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
942
948
|
} | undefined;
|
|
943
949
|
readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
944
950
|
} & {
|
|
945
|
-
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view
|
|
951
|
+
rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view").BpOffset): import("@jbrowse/core/ui").MenuItem[];
|
|
946
952
|
} & {
|
|
947
953
|
afterCreate(): void;
|
|
948
954
|
afterAttach(): void;
|
|
@@ -965,10 +971,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
965
971
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
966
972
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
967
973
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
968
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
974
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
969
975
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
970
976
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
971
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
977
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
972
978
|
}>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
973
979
|
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
974
980
|
displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
@@ -988,10 +994,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
988
994
|
showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
989
995
|
trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
990
996
|
showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
991
|
-
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
997
|
+
highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType, import("@jbrowse/plugin-linear-genome-view").HighlightType>>, [undefined]>;
|
|
992
998
|
colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
993
999
|
showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
994
|
-
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view
|
|
1000
|
+
init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined, import("@jbrowse/plugin-linear-genome-view").InitState | undefined>;
|
|
995
1001
|
}>>>;
|
|
996
1002
|
viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
997
1003
|
} & {
|
package/package.json
CHANGED
|
@@ -1,6 +1,7 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-linear-comparative-view",
|
|
3
|
-
"version": "4.
|
|
3
|
+
"version": "4.1.3",
|
|
4
|
+
"type": "module",
|
|
4
5
|
"description": "JBrowse 2 linear comparative view",
|
|
5
6
|
"keywords": [
|
|
6
7
|
"jbrowse",
|
|
@@ -21,16 +22,16 @@
|
|
|
21
22
|
],
|
|
22
23
|
"dependencies": {
|
|
23
24
|
"@jbrowse/mobx-state-tree": "^5.5.0",
|
|
24
|
-
"@mui/icons-material": "^7.3.
|
|
25
|
-
"@mui/material": "^7.3.
|
|
26
|
-
"copy-to-clipboard": "^3.3.3",
|
|
25
|
+
"@mui/icons-material": "^7.3.7",
|
|
26
|
+
"@mui/material": "^7.3.7",
|
|
27
27
|
"@types/file-saver-es": "^2.0.3",
|
|
28
|
+
"copy-to-clipboard": "^3.3.3",
|
|
28
29
|
"file-saver-es": "^2.0.5",
|
|
29
30
|
"mobx": "^6.15.0",
|
|
30
31
|
"mobx-react": "^9.2.1",
|
|
31
|
-
"@jbrowse/plugin-
|
|
32
|
-
"@jbrowse/
|
|
33
|
-
"@jbrowse/
|
|
32
|
+
"@jbrowse/plugin-linear-genome-view": "^4.1.3",
|
|
33
|
+
"@jbrowse/core": "^4.1.3",
|
|
34
|
+
"@jbrowse/plugin-alignments": "^4.1.3"
|
|
34
35
|
},
|
|
35
36
|
"peerDependencies": {
|
|
36
37
|
"react": ">=18.0.0",
|