npm - @jbrowse/plugin-linear-comparative-view - Versions diffs - 3.7.0 → 4.0.1 - Mend

@jbrowse/plugin-linear-comparative-view 3.7.0 → 4.0.1

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Files changed (266) hide show

package/esm/LinearSyntenyView/model.d.ts CHANGED Viewed

@@ -1,56 +1,43 @@
-import { Curves } from './components/Icons';
-import type { ExportSvgOptions, ImportFormSyntenyTrack } from './types';
+import { Curves } from './components/Icons.tsx';
+import type { ExportSvgOptions, ImportFormSyntenyTrack, LinearSyntenyViewInit } from './types.ts';
 import type PluginManager from '@jbrowse/core/PluginManager';
-import type { Instance } from 'mobx-state-tree';
-export default function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+import type { Instance } from '@jbrowse/mobx-state-tree';
+export default function stateModelFactory(pluginManager: PluginManager): import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
 } & {
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"LinearComparativeView">;
-    trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
-    showIntraviewLinks: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    linkViews: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    interactiveOverlay: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    showDynamicControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    levels: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        height: import("mobx-state-tree").IType<number | undefined, number, number>;
-        level: import("mobx-state-tree").ISimpleType<number>;
-    }, {
-        setHeight(n: number): number;
-        showTrack(trackId: string, initialSnapshot?: {}): void;
-        hideTrack(trackId: string): number;
-        toggleTrack(trackId: string): boolean;
-    } & {
-        readonly assemblyNames: (string | undefined)[];
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearComparativeView">;
+    trackSelectorType: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+    showIntraviewLinks: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    linkViews: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    interactiveOverlay: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showDynamicControls: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    levels: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    views: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
     }, {
         width: number;
     } & {
@@ -63,14 +50,14 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         volatileWidth: number | undefined;
         minimumBlockWidth: number;
         draggingTrackId: undefined | string;
+        lastTrackDragY: undefined | number;
         volatileError: unknown;
-        afterDisplayedRegionsSetCallbacks: (() => void)[];
         scaleFactor: number;
         trackRefs: Record<string, HTMLDivElement>;
         coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
         coarseTotalBp: number;
-        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
-        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
+        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
+        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
     } & {
         readonly pinnedTracks: any[];
         readonly unpinnedTracks: any[];
@@ -84,7 +71,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly rubberbandTop: number;
         readonly pinnedTracksTop: number;
     } & {
-        scaleBarDisplayPrefix(): string | undefined;
+        scalebarDisplayPrefix(): string | undefined;
         MiniControlsComponent(): React.FC<any>;
         HeaderComponent(): React.FC<any>;
         readonly assembliesNotFound: string | undefined;
@@ -92,7 +79,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly assembliesInitialized: boolean;
         readonly initialized: boolean;
         readonly hasDisplayedRegions: boolean;
-        readonly scaleBarHeight: number;
+        readonly loadingMessage: "Loading" | undefined;
+        readonly hasSomethingToShow: boolean;
+        readonly showLoading: boolean;
+        readonly showImportForm: boolean;
+        readonly scalebarHeight: number;
         readonly headerHeight: number;
         readonly trackHeights: number;
         readonly trackHeightsWithResizeHandles: number;
@@ -108,11 +99,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         searchScope(assemblyName: string): {
             assemblyName: string;
             includeAggregateIndexes: boolean;
-            tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+            tracks: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>>;
         };
+        readonly trackMap: Map<any, any>;
         getTrack(id: string): any;
         rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-        rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
         readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
     } & {
         setShowTrackOutlines(arg: boolean): void;
@@ -124,52 +115,44 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         setHideHeaderOverview(b: boolean): void;
         setHideNoTracksActive(b: boolean): void;
         setShowGridlines(b: boolean): void;
-        addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
-        setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[]): void;
-        removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
+        addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
+        setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
+        removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
         scrollTo(offsetPx: number): number;
         zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
+        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
         setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
         setNewView(bpPerPx: number, offsetPx: number): void;
         horizontallyFlip(): void;
         showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-        hideTrack(trackId: string): number;
+        hideTrack(trackId: string): 0 | 1;
     } & {
         moveTrackDown(id: string): void;
         moveTrackUp(id: string): void;
         moveTrackToTop(id: string): void;
         moveTrackToBottom(id: string): void;
         moveTrack(movingId: string, targetId: string): void;
-        toggleTrack(trackId: string): boolean;
+        toggleTrack(trackId: string): void;
         setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
         setShowCenterLine(b: boolean): void;
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
         activateTrackSelector(): import("@jbrowse/core/util").Widget;
-        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): {
+        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
+            assemblyName: string;
+            refName: string;
             start: number;
             end: number;
-            type: string;
-            regionNumber?: number;
-            reversed?: boolean;
-            refName: string;
-            assemblyName: string;
-            key: string;
-            offsetPx: number;
-            widthPx: number;
-            variant?: string;
-            isLeftEndOfDisplayedRegion?: boolean;
         }[];
-        afterDisplayedRegionsSet(cb: () => void): void;
         horizontalScroll(distance: number): number;
         center(): void;
         showAllRegions(): void;
         showAllRegionsInAssembly(assemblyName?: string): void;
         setDraggingTrackId(idx?: string): void;
+        setLastTrackDragY(y: number): void;
         setScaleFactor(factor: number): void;
         clearView(): void;
-        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState): void;
-        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").ExportSvgOptions): Promise<void>;
+        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
+        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
     } & {
         slide: (viewWidths: number) => void;
     } & {
@@ -187,10 +170,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
         readonly visibleLocStrings: string;
         readonly coarseVisibleLocStrings: string;
+        readonly coarseTotalBpDisplayStr: string;
     } & {
         setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
     } & {
-        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
+        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
         navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
         navToSearchString({ input, assembly, }: {
             input: string;
@@ -198,8 +182,8 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         }): Promise<void>;
         navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
         navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
-        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
-        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
+        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
+        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
     } & {
         rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
         bpToPx({ refName, coord, regionNumber, }: {
@@ -233,60 +217,67 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
             end: number;
             reversed?: boolean;
         } | undefined;
+        readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+    } & {
+        rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
     } & {
         afterCreate(): void;
         afterAttach(): void;
-    }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
-    }>>, {
-        id: string;
-        type: string;
-        displayName: string | undefined;
-        tracks: any[];
-        minimized: boolean;
-        offsetPx: number;
-        bpPerPx: number;
-        displayedRegions: import("@jbrowse/core/util").Region[];
-        hideHeader: boolean;
-        hideHeaderOverview: boolean;
-        hideNoTracksActive: boolean;
-        trackSelectorType: string;
-        showCenterLine: boolean;
-        showCytobandsSetting: boolean;
-        trackLabels: string;
-        showGridlines: boolean;
-        highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[];
-        colorByCDS: boolean;
-        showTrackOutlines: boolean;
-    }>>;
-    viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
+    }, import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
+    }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
+    }>>>;
+    viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
 } & {
-    type: import("mobx-state-tree").ISimpleType<"LinearSyntenyView">;
-    drawCIGAR: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    drawCIGARMatchesOnly: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    drawCurves: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    drawLocationMarkers: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearSyntenyView">;
+    drawCIGAR: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    drawCIGARMatchesOnly: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    drawCurves: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    drawLocationMarkers: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    init: import("@jbrowse/mobx-state-tree").IType<LinearSyntenyViewInit | undefined, LinearSyntenyViewInit | undefined, LinearSyntenyViewInit | undefined>;
 }, {
     width: number;
 } & {
@@ -297,18 +288,21 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
     setMinimized(flag: boolean): void;
 } & {
     width: number | undefined;
+    isLoading: boolean;
 } & {
     readonly initialized: boolean;
     readonly refNames: string[][];
     readonly assemblyNames: string[];
+    readonly loadingMessage: "Loading" | undefined;
+    readonly showLoading: boolean;
 } & {
     afterAttach(): void;
     beforeDestroy(): void;
-    onSubviewAction(actionName: string, path: string, args?: unknown[]): void;
     setWidth(newWidth: number): void;
-    setViews(views: import("mobx-state-tree").SnapshotIn<import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel>[]): void;
+    setIsLoading(arg: boolean): void;
+    setViews(views: import("@jbrowse/mobx-state-tree").SnapshotIn<import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel>[]): void;
     removeView(view: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel): void;
-    setLevelHeight(newHeight: number, level?: number): number;
+    setLevelHeight(newHeight: number, level?: number): any;
     setLinkViews(arg: boolean): void;
     setShowDynamicControls(arg: boolean): void;
     activateTrackSelector(level: number): import("@jbrowse/core/util").Widget;
@@ -329,6 +323,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
     afterAttach(): void;
 } & {
     importFormSyntenyTrackSelections: import("mobx").IObservableArray<ImportFormSyntenyTrack>;
+} & {
+    readonly hasSomethingToShow: boolean;
+} & {
+    readonly showLoading: boolean;
+    readonly showImportForm: boolean;
 } & {
     importFormRemoveRow(idx: number): void;
     clearImportFormSyntenyTracks(): void;
@@ -338,6 +337,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
     setDrawCIGARMatchesOnly(arg: boolean): void;
     setDrawLocationMarkers(arg: boolean): void;
     showAllRegions(): void;
+    setInit(init?: LinearSyntenyViewInit): void;
 } & {
     exportSvg(opts: ExportSvgOptions): Promise<void>;
 } & {
@@ -416,57 +416,46 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         };
         onClick: () => void;
     })[];
+} & {
+    afterAttach(): void;
 }, {
     type: "LinearComparativeView";
-} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
 } & {
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"LinearComparativeView">;
-    trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
-    showIntraviewLinks: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    linkViews: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    interactiveOverlay: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    showDynamicControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    levels: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        height: import("mobx-state-tree").IType<number | undefined, number, number>;
-        level: import("mobx-state-tree").ISimpleType<number>;
-    }, {
-        setHeight(n: number): number;
-        showTrack(trackId: string, initialSnapshot?: {}): void;
-        hideTrack(trackId: string): number;
-        toggleTrack(trackId: string): boolean;
-    } & {
-        readonly assemblyNames: (string | undefined)[];
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearComparativeView">;
+    trackSelectorType: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+    showIntraviewLinks: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    linkViews: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    interactiveOverlay: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showDynamicControls: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    levels: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    views: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
     }, {
         width: number;
     } & {
@@ -479,14 +468,14 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         volatileWidth: number | undefined;
         minimumBlockWidth: number;
         draggingTrackId: undefined | string;
+        lastTrackDragY: undefined | number;
         volatileError: unknown;
-        afterDisplayedRegionsSetCallbacks: (() => void)[];
         scaleFactor: number;
         trackRefs: Record<string, HTMLDivElement>;
         coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
         coarseTotalBp: number;
-        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
-        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
+        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
+        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
     } & {
         readonly pinnedTracks: any[];
         readonly unpinnedTracks: any[];
@@ -500,7 +489,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly rubberbandTop: number;
         readonly pinnedTracksTop: number;
     } & {
-        scaleBarDisplayPrefix(): string | undefined;
+        scalebarDisplayPrefix(): string | undefined;
         MiniControlsComponent(): React.FC<any>;
         HeaderComponent(): React.FC<any>;
         readonly assembliesNotFound: string | undefined;
@@ -508,7 +497,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly assembliesInitialized: boolean;
         readonly initialized: boolean;
         readonly hasDisplayedRegions: boolean;
-        readonly scaleBarHeight: number;
+        readonly loadingMessage: "Loading" | undefined;
+        readonly hasSomethingToShow: boolean;
+        readonly showLoading: boolean;
+        readonly showImportForm: boolean;
+        readonly scalebarHeight: number;
         readonly headerHeight: number;
         readonly trackHeights: number;
         readonly trackHeightsWithResizeHandles: number;
@@ -524,11 +517,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         searchScope(assemblyName: string): {
             assemblyName: string;
             includeAggregateIndexes: boolean;
-            tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
+            tracks: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>>;
         };
+        readonly trackMap: Map<any, any>;
         getTrack(id: string): any;
         rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-        rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
         readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
     } & {
         setShowTrackOutlines(arg: boolean): void;
@@ -540,52 +533,313 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         setHideHeaderOverview(b: boolean): void;
         setHideNoTracksActive(b: boolean): void;
         setShowGridlines(b: boolean): void;
-        addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
-        setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[]): void;
-        removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
+        addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
+        setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
+        removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
         scrollTo(offsetPx: number): number;
         zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
+        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
         setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
         setNewView(bpPerPx: number, offsetPx: number): void;
         horizontallyFlip(): void;
         showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-        hideTrack(trackId: string): number;
+        hideTrack(trackId: string): 0 | 1;
     } & {
         moveTrackDown(id: string): void;
         moveTrackUp(id: string): void;
         moveTrackToTop(id: string): void;
         moveTrackToBottom(id: string): void;
         moveTrack(movingId: string, targetId: string): void;
-        toggleTrack(trackId: string): boolean;
+        toggleTrack(trackId: string): void;
         setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
         setShowCenterLine(b: boolean): void;
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
         activateTrackSelector(): import("@jbrowse/core/util").Widget;
-        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): {
+        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
+            assemblyName: string;
+            refName: string;
             start: number;
             end: number;
-            type: string;
+        }[];
+        horizontalScroll(distance: number): number;
+        center(): void;
+        showAllRegions(): void;
+        showAllRegionsInAssembly(assemblyName?: string): void;
+        setDraggingTrackId(idx?: string): void;
+        setLastTrackDragY(y: number): void;
+        setScaleFactor(factor: number): void;
+        clearView(): void;
+        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
+        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
+    } & {
+        slide: (viewWidths: number) => void;
+    } & {
+        zoom: (targetBpPerPx: number) => void;
+    } & {
+        readonly canShowCytobands: boolean;
+        readonly showCytobands: boolean;
+        readonly anyCytobandsExist: boolean;
+        readonly cytobandOffset: number;
+    } & {
+        menuItems(): import("@jbrowse/core/ui").MenuItem[];
+    } & {
+        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
+        readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+        readonly visibleLocStrings: string;
+        readonly coarseVisibleLocStrings: string;
+        readonly coarseTotalBpDisplayStr: string;
+    } & {
+        setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
+    } & {
+        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
+        navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
+        navToSearchString({ input, assembly, }: {
+            input: string;
+            assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
+        }): Promise<void>;
+        navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
+        navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
+        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
+        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
+    } & {
+        rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+        bpToPx({ refName, coord, regionNumber, }: {
+            refName: string;
+            coord: number;
             regionNumber?: number;
+        }): {
+            index: number;
+            offsetPx: number;
+        } | undefined;
+        centerAt(coord: number, refName: string, regionNumber?: number): void;
+        pxToBp(px: number): {
+            coord: number;
+            index: number;
+            refName: string;
+            oob: boolean;
+            assemblyName: string;
+            offset: number;
+            start: number;
+            end: number;
             reversed?: boolean;
+        };
+        readonly centerLineInfo: {
+            coord: number;
+            index: number;
             refName: string;
+            oob: boolean;
             assemblyName: string;
-            key: string;
-            offsetPx: number;
-            widthPx: number;
-            variant?: string;
-            isLeftEndOfDisplayedRegion?: boolean;
+            offset: number;
+            start: number;
+            end: number;
+            reversed?: boolean;
+        } | undefined;
+        readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+    } & {
+        rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
+    } & {
+        afterCreate(): void;
+        afterAttach(): void;
+    }, import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
+    }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
+    }>>>;
+    viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+}>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+} & {
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearComparativeView">;
+    trackSelectorType: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+    showIntraviewLinks: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    linkViews: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    interactiveOverlay: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showDynamicControls: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    levels: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    views: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
+    }, {
+        width: number;
+    } & {
+        menuItems(): import("@jbrowse/core/ui").MenuItem[];
+    } & {
+        setDisplayName(name: string): void;
+        setWidth(newWidth: number): void;
+        setMinimized(flag: boolean): void;
+    } & {
+        volatileWidth: number | undefined;
+        minimumBlockWidth: number;
+        draggingTrackId: undefined | string;
+        lastTrackDragY: undefined | number;
+        volatileError: unknown;
+        scaleFactor: number;
+        trackRefs: Record<string, HTMLDivElement>;
+        coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+        coarseTotalBp: number;
+        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
+        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset;
+    } & {
+        readonly pinnedTracks: any[];
+        readonly unpinnedTracks: any[];
+        readonly trackLabelsSetting: any;
+        readonly width: number;
+        readonly interRegionPaddingWidth: number;
+        readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
+        readonly isTopLevelView: boolean;
+        readonly stickyViewHeaders: boolean;
+        readonly rubberbandTop: number;
+        readonly pinnedTracksTop: number;
+    } & {
+        scalebarDisplayPrefix(): string | undefined;
+        MiniControlsComponent(): React.FC<any>;
+        HeaderComponent(): React.FC<any>;
+        readonly assembliesNotFound: string | undefined;
+        readonly assemblyErrors: string;
+        readonly assembliesInitialized: boolean;
+        readonly initialized: boolean;
+        readonly hasDisplayedRegions: boolean;
+        readonly loadingMessage: "Loading" | undefined;
+        readonly hasSomethingToShow: boolean;
+        readonly showLoading: boolean;
+        readonly showImportForm: boolean;
+        readonly scalebarHeight: number;
+        readonly headerHeight: number;
+        readonly trackHeights: number;
+        readonly trackHeightsWithResizeHandles: number;
+        readonly height: number;
+        readonly totalBp: number;
+        readonly maxBpPerPx: number;
+        readonly minBpPerPx: number;
+        readonly error: unknown;
+        readonly maxOffset: number;
+        readonly minOffset: number;
+        readonly displayedRegionsTotalPx: number;
+        renderProps(): any;
+        searchScope(assemblyName: string): {
+            assemblyName: string;
+            includeAggregateIndexes: boolean;
+            tracks: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>>;
+        };
+        readonly trackMap: Map<any, any>;
+        getTrack(id: string): any;
+        rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
+        readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
+    } & {
+        setShowTrackOutlines(arg: boolean): void;
+        setColorByCDS(flag: boolean): void;
+        setShowCytobands(flag: boolean): void;
+        setWidth(newWidth: number): void;
+        setError(error: unknown): void;
+        setHideHeader(b: boolean): void;
+        setHideHeaderOverview(b: boolean): void;
+        setHideNoTracksActive(b: boolean): void;
+        setShowGridlines(b: boolean): void;
+        addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
+        setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType[]): void;
+        removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType): void;
+        scrollTo(offsetPx: number): number;
+        zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
+        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
+        setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
+        setNewView(bpPerPx: number, offsetPx: number): void;
+        horizontallyFlip(): void;
+        showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
+        hideTrack(trackId: string): 0 | 1;
+    } & {
+        moveTrackDown(id: string): void;
+        moveTrackUp(id: string): void;
+        moveTrackToTop(id: string): void;
+        moveTrackToBottom(id: string): void;
+        moveTrack(movingId: string, targetId: string): void;
+        toggleTrack(trackId: string): void;
+        setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
+        setShowCenterLine(b: boolean): void;
+        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
+        activateTrackSelector(): import("@jbrowse/core/util").Widget;
+        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): {
+            assemblyName: string;
+            refName: string;
+            start: number;
+            end: number;
         }[];
-        afterDisplayedRegionsSet(cb: () => void): void;
         horizontalScroll(distance: number): number;
         center(): void;
         showAllRegions(): void;
         showAllRegionsInAssembly(assemblyName?: string): void;
         setDraggingTrackId(idx?: string): void;
+        setLastTrackDragY(y: number): void;
         setScaleFactor(factor: number): void;
         clearView(): void;
-        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState): void;
-        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").ExportSvgOptions): Promise<void>;
+        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState): void;
+        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").ExportSvgOptions): Promise<void>;
     } & {
         slide: (viewWidths: number) => void;
     } & {
@@ -603,10 +857,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
         readonly visibleLocStrings: string;
         readonly coarseVisibleLocStrings: string;
+        readonly coarseTotalBpDisplayStr: string;
     } & {
         setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
     } & {
-        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
+        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): void;
         navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
         navToSearchString({ input, assembly, }: {
             input: string;
@@ -614,8 +869,8 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         }): Promise<void>;
         navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
         navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
-        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
-        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
+        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation): void;
+        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").NavLocation[]): void;
     } & {
         rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
         bpToPx({ refName, coord, regionNumber, }: {
@@ -649,54 +904,67 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
             end: number;
             reversed?: boolean;
         } | undefined;
+        readonly visibleRegions: import("@jbrowse/core/util/blockTypes").BaseBlock[];
+    } & {
+        rubberbandClickMenuItems(clickOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").BpOffset): import("@jbrowse/core/ui").MenuItem[];
     } & {
         afterCreate(): void;
         afterAttach(): void;
-    }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
-    }>>, {
-        id: string;
-        type: string;
-        displayName: string | undefined;
-        tracks: any[];
-        minimized: boolean;
-        offsetPx: number;
-        bpPerPx: number;
-        displayedRegions: import("@jbrowse/core/util").Region[];
-        hideHeader: boolean;
-        hideHeaderOverview: boolean;
-        hideNoTracksActive: boolean;
-        trackSelectorType: string;
-        showCenterLine: boolean;
-        showCytobandsSetting: boolean;
-        trackLabels: string;
-        showGridlines: boolean;
-        highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[];
-        colorByCDS: boolean;
-        showTrackOutlines: boolean;
-    }>>;
-    viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+    }, import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
+    }>>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    } & {
+        id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        type: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+        offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+        displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
+        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        hideHeader: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideHeaderOverview: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        hideNoTracksActive: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        trackSelectorType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showCenterLine: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showCytobandsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        trackLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+        showGridlines: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        highlight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").HighlightType>>, [undefined]>;
+        colorByCDS: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        showTrackOutlines: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types.ts").InitState | undefined>;
+    }>>>;
+    viewTrackConfigs: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+} & {
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearSyntenyView">;
+    drawCIGAR: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    drawCIGARMatchesOnly: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    drawCurves: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    drawLocationMarkers: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    init: import("@jbrowse/mobx-state-tree").IType<LinearSyntenyViewInit | undefined, LinearSyntenyViewInit | undefined, LinearSyntenyViewInit | undefined>;
+}>>;
 export type LinearSyntenyViewStateModel = ReturnType<typeof stateModelFactory>;
 export type LinearSyntenyViewModel = Instance<LinearSyntenyViewStateModel>;