@jbrowse/plugin-linear-comparative-view 3.5.1 → 3.6.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearComparativeDisplay/stateModelFactory.d.ts +4 -0
- package/dist/LinearComparativeDisplay/stateModelFactory.js +14 -7
- package/dist/LinearComparativeView/components/Rubberband.d.ts +2 -2
- package/dist/LinearComparativeView/components/Rubberband.js +16 -154
- package/dist/LinearComparativeView/components/RubberbandSpan.d.ts +15 -0
- package/dist/LinearComparativeView/components/RubberbandSpan.js +38 -0
- package/dist/LinearComparativeView/components/RubberbandTooltip.d.ts +5 -0
- package/dist/LinearComparativeView/components/RubberbandTooltip.js +20 -0
- package/dist/LinearComparativeView/components/useRangeSelect.d.ts +59 -0
- package/dist/LinearComparativeView/components/useRangeSelect.js +128 -0
- package/dist/LinearComparativeView/components/util.d.ts +4 -0
- package/dist/LinearComparativeView/components/util.js +6 -0
- package/dist/LinearSyntenyDisplay/components/BlockError.d.ts +3 -0
- package/dist/LinearSyntenyDisplay/components/BlockError.js +16 -0
- package/dist/LinearSyntenyDisplay/components/BlockMessage.d.ts +3 -0
- package/dist/LinearSyntenyDisplay/components/BlockMessage.js +24 -0
- package/dist/LinearSyntenyDisplay/components/Component.js +11 -50
- package/dist/LinearSyntenyDisplay/components/LoadingMessage.d.ts +3 -0
- package/dist/LinearSyntenyDisplay/components/LoadingMessage.js +21 -0
- package/dist/LinearSyntenyDisplay/model.d.ts +4 -0
- package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyOpenCustomTrack.js +2 -51
- package/dist/LinearSyntenyView/components/ImportForm/selectors/AnchorsSelector.d.ts +3 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/AnchorsSelector.js +13 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/PifGzSelector.d.ts +3 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/PifGzSelector.js +13 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/SelectorTypes.d.ts +19 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/SelectorTypes.js +10 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/StandardFormatSelector.d.ts +3 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/StandardFormatSelector.js +20 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/SwapAssemblies.d.ts +13 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/SwapAssemblies.js +32 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/index.d.ts +4 -0
- package/dist/LinearSyntenyView/components/ImportForm/selectors/index.js +27 -0
- package/dist/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js +1 -1
- package/esm/LinearComparativeDisplay/stateModelFactory.d.ts +4 -0
- package/esm/LinearComparativeDisplay/stateModelFactory.js +14 -7
- package/esm/LinearComparativeView/components/Rubberband.d.ts +2 -2
- package/esm/LinearComparativeView/components/Rubberband.js +17 -155
- package/esm/LinearComparativeView/components/RubberbandSpan.d.ts +15 -0
- package/esm/LinearComparativeView/components/RubberbandSpan.js +32 -0
- package/esm/LinearComparativeView/components/RubberbandTooltip.d.ts +5 -0
- package/esm/LinearComparativeView/components/RubberbandTooltip.js +17 -0
- package/esm/LinearComparativeView/components/useRangeSelect.d.ts +59 -0
- package/esm/LinearComparativeView/components/useRangeSelect.js +125 -0
- package/esm/LinearComparativeView/components/util.d.ts +4 -0
- package/esm/LinearComparativeView/components/util.js +3 -0
- package/esm/LinearSyntenyDisplay/components/BlockError.d.ts +3 -0
- package/esm/LinearSyntenyDisplay/components/BlockError.js +13 -0
- package/esm/LinearSyntenyDisplay/components/BlockMessage.d.ts +3 -0
- package/esm/LinearSyntenyDisplay/components/BlockMessage.js +21 -0
- package/esm/LinearSyntenyDisplay/components/Component.js +9 -48
- package/esm/LinearSyntenyDisplay/components/LoadingMessage.d.ts +3 -0
- package/esm/LinearSyntenyDisplay/components/LoadingMessage.js +18 -0
- package/esm/LinearSyntenyDisplay/model.d.ts +4 -0
- package/esm/LinearSyntenyView/components/ImportForm/ImportSyntenyOpenCustomTrack.js +3 -49
- package/esm/LinearSyntenyView/components/ImportForm/selectors/AnchorsSelector.d.ts +3 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/AnchorsSelector.js +8 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/PifGzSelector.d.ts +3 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/PifGzSelector.js +8 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/SelectorTypes.d.ts +19 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/SelectorTypes.js +7 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/StandardFormatSelector.d.ts +3 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/StandardFormatSelector.js +15 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/SwapAssemblies.d.ts +13 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/SwapAssemblies.js +27 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/index.d.ts +4 -0
- package/esm/LinearSyntenyView/components/ImportForm/selectors/index.js +4 -0
- package/esm/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js +1 -1
- package/package.json +5 -5
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@@ -70,6 +70,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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renderInProgress: string | undefined;
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features: Feature[] | undefined;
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message: string | undefined;
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loadingStatus: string | undefined;
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} & {
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readonly level: number;
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readonly height: number;
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@@ -152,6 +153,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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renderInProgress: string | undefined;
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features: Feature[] | undefined;
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message: string | undefined;
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loadingStatus: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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@@ -221,12 +223,14 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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renderInProgress: string | undefined;
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features: Feature[] | undefined;
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message: string | undefined;
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loadingStatus: string | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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highResolutionScaling: number;
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};
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} & {
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setLoading(newStopToken: string): void;
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setMessage(messageText: string): void;
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setLoadingStatus(messageText: string): void;
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setRendered(args?: {
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features: Feature[];
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}): void;
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@@ -16,6 +16,7 @@ function stateModelFactory(configSchema) {
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renderInProgress: undefined,
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features: undefined,
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message: undefined,
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loadingStatus: undefined,
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}))
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.views(self => ({
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get level() {
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@@ -45,6 +46,9 @@ function stateModelFactory(configSchema) {
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self.error = undefined;
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stopToken = undefined;
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},
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setLoadingStatus(messageText) {
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self.loadingStatus = messageText;
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},
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setRendered(args) {
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if (!args) {
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return;
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@@ -110,6 +114,7 @@ function renderBlockData(self) {
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rpcManager,
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renderProps: {
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...display.renderProps(),
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model: display,
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level,
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view: parent,
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adapterConfig,
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@@ -125,15 +130,17 @@ async function renderBlockEffect(props) {
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return;
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}
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const { rpcManager, renderProps } = props;
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const { sessionId, adapterConfig, level } = renderProps;
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const { model, sessionId, adapterConfig, level } = renderProps;
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const view = renderProps.view.views[level];
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const features = (await rpcManager.call('getFeats', 'CoreGetFeatures', {
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regions: view.staticBlocks.contentBlocks,
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sessionId,
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adapterConfig,
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}));
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return {
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features: (0, util_1.dedupe)(
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features: (0, util_1.dedupe)((await rpcManager.call('getFeats', 'CoreGetFeatures', {
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regions: view.staticBlocks.contentBlocks,
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sessionId,
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adapterConfig,
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statusCallback: (arg) => {
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model.setLoadingStatus(arg);
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},
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})), f => f.id()),
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};
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}
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exports.default = stateModelFactory;
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import type { LinearComparativeViewModel } from '../model';
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type LCV = LinearComparativeViewModel;
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declare const
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declare const Rubberband: ({ model, ControlComponent, }: {
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model: LCV;
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ControlComponent?: React.ReactElement;
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}) => import("react/jsx-runtime").JSX.Element;
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export default
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export default Rubberband;
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@@ -6,165 +6,27 @@ Object.defineProperty(exports, "__esModule", { value: true });
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const jsx_runtime_1 = require("react/jsx-runtime");
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const react_1 = require("react");
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const ui_1 = require("@jbrowse/core/ui");
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const util_1 = require("@jbrowse/core/util");
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const material_1 = require("@mui/material");
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const mobx_1 = require("mobx");
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const mobx_react_1 = require("mobx-react");
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const mui_1 = require("tss-react/mui");
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const RubberbandSpan_1 = __importDefault(require("./RubberbandSpan"));
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const VerticalGuide_1 = __importDefault(require("./VerticalGuide"));
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const
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},
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rubberbandControl: {
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cursor: 'crosshair',
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width: '100%',
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minHeight: 8,
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},
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rubberbandText: {
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color: theme.palette.tertiary.contrastText,
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},
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popover: {
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mouseEvents: 'none',
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cursor: 'crosshair',
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},
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paper: {
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paddingLeft: theme.spacing(1),
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paddingRight: theme.spacing(1),
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},
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};
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const useRangeSelect_1 = require("./useRangeSelect");
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const useStyles = (0, mui_1.makeStyles)()({
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rubberbandControl: {
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cursor: 'crosshair',
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width: '100%',
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minHeight: 8,
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position: 'relative',
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zIndex: 900,
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},
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});
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const
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const
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const [currentX, setCurrentX] = (0, react_1.useState)();
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const [anchorPosition, setAnchorPosition] = (0, react_1.useState)();
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const [guideX, setGuideX] = (0, react_1.useState)();
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const controlsRef = (0, react_1.useRef)(null);
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const rubberbandRef = (0, react_1.useRef)(null);
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const Rubberband = (0, mobx_react_1.observer)(function ({ model, ControlComponent = (0, jsx_runtime_1.jsx)("div", {}), }) {
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const ref = (0, react_1.useRef)(null);
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const { classes } = useStyles();
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const
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(0,
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function computeOffsets(offsetX, view) {
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if (startX === undefined) {
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return;
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}
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let leftPx = startX;
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;
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}
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}
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}
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}
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function globalMouseUp(event) {
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setAnchorPosition({
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});
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(0, mobx_1.transaction)(() => {
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for (const view of model.views) {
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const args = computeOffsets(offsetX, view);
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if (args) {
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}
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}
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};
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}
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}, [startX, mouseDragging, model]);
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handleClose();
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}
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}, [mouseDragging, currentX, startX]);
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function mouseDown(event) {
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}
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function mouseMove(event) {
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}
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function mouseOut() {
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(0, mobx_1.transaction)(() => {
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view.setOffsets(undefined, undefined);
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}
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});
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}
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function handleClose() {
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}
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const open = Boolean(anchorPosition);
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function handleMenuItemClick(_, callback) {
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callback();
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handleClose();
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}
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if (startX === undefined) {
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return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [guideX !== undefined ? ((0, jsx_runtime_1.jsx)(VerticalGuide_1.default, { model: model, coordX: guideX })) : null, (0, jsx_runtime_1.jsx)("div", { ref: controlsRef, className: classes.rubberbandControl, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove, children: ControlComponent })] }));
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}
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const right = anchorPosition ? anchorPosition.offsetX : currentX || 0;
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const left = Math.min(right, startX);
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const width = Math.abs(right - startX);
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|
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const { views } = model;
|
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|
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const leftBpOffset = views.map(view => view.pxToBp(left));
|
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|
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const rightBpOffset = views.map(view => view.pxToBp(left + width));
|
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|
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const numOfBpSelected = views.map(view => Math.ceil(width * view.bpPerPx));
|
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|
-
return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [rubberbandRef.current ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: rubberbandRef.current, anchorOrigin: {
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vertical: 'top',
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horizontal: 'left',
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}, transformOrigin: {
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vertical: 'bottom',
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horizontal: 'right',
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}, keepMounted: true, disableRestoreFocus: true, children: leftBpOffset.map((l, idx) => ((0, jsx_runtime_1.jsx)(material_1.Typography, { children: (0, util_1.stringify)(l, true) }, [JSON.stringify(l), idx, 'left'].join('-')))) }), (0, jsx_runtime_1.jsx)(material_1.Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: rubberbandRef.current, anchorOrigin: {
|
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vertical: 'top',
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horizontal: 'right',
|
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}, transformOrigin: {
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vertical: 'bottom',
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horizontal: 'left',
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}, keepMounted: true, disableRestoreFocus: true, children: rightBpOffset.map((l, idx) => ((0, jsx_runtime_1.jsx)(material_1.Typography, { children: (0, util_1.stringify)(l, true) }, [JSON.stringify(l), idx, 'right'].join('-')))) })] })) : null, (0, jsx_runtime_1.jsx)("div", { ref: rubberbandRef, className: classes.rubberband, style: { left, width }, children: (0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h6", className: classes.rubberbandText, children: numOfBpSelected.map((n, i) => ((0, jsx_runtime_1.jsx)(material_1.Typography, { children: `${n.toLocaleString('en-US')}bp` }, `${n}_${i}`))) }) }), (0, jsx_runtime_1.jsx)("div", { className: classes.rubberbandControl, ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove, children: ControlComponent }), anchorPosition ? ((0, jsx_runtime_1.jsx)(ui_1.Menu, { anchorReference: "anchorPosition", anchorPosition: {
|
|
26
|
+
const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, open, handleMenuItemClick, handleClose, mouseMove, mouseDown, mouseOut, } = (0, useRangeSelect_1.useRangeSelect)(ref, model);
|
|
27
|
+
return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [guideX !== undefined ? ((0, jsx_runtime_1.jsx)(VerticalGuide_1.default, { model: model, coordX: guideX })) : rubberbandOn ? ((0, jsx_runtime_1.jsx)(RubberbandSpan_1.default, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, numOfBpSelected: numOfBpSelected, width: width, left: left })) : null, anchorPosition ? ((0, jsx_runtime_1.jsx)(ui_1.Menu, { anchorReference: "anchorPosition", anchorPosition: {
|
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28
|
left: anchorPosition.clientX,
|
|
167
29
|
top: anchorPosition.clientY,
|
|
168
|
-
}, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null] }));
|
|
30
|
+
}, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null, (0, jsx_runtime_1.jsx)("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, ref: ref, onMouseDown: mouseDown, onMouseMove: mouseMove, onMouseOut: mouseOut, children: ControlComponent })] }));
|
|
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31
|
});
|
|
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|
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exports.default =
|
|
32
|
+
exports.default = Rubberband;
|
|
@@ -0,0 +1,15 @@
|
|
|
1
|
+
interface Offset {
|
|
2
|
+
coord: number;
|
|
3
|
+
refName?: string;
|
|
4
|
+
oob?: boolean;
|
|
5
|
+
}
|
|
6
|
+
export default function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, top, sticky, }: {
|
|
7
|
+
leftBpOffset: Offset[];
|
|
8
|
+
rightBpOffset: Offset[];
|
|
9
|
+
numOfBpSelected?: number[];
|
|
10
|
+
left: number;
|
|
11
|
+
width: number;
|
|
12
|
+
top?: number;
|
|
13
|
+
sticky?: boolean;
|
|
14
|
+
}): import("react/jsx-runtime").JSX.Element;
|
|
15
|
+
export {};
|
|
@@ -0,0 +1,38 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
exports.default = RubberbandSpan;
|
|
7
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
8
|
+
const react_1 = require("react");
|
|
9
|
+
const util_1 = require("@jbrowse/core/util");
|
|
10
|
+
const material_1 = require("@mui/material");
|
|
11
|
+
const mui_1 = require("tss-react/mui");
|
|
12
|
+
const RubberbandTooltip_1 = __importDefault(require("./RubberbandTooltip"));
|
|
13
|
+
const useStyles = (0, mui_1.makeStyles)()(theme => {
|
|
14
|
+
const { tertiary } = theme.palette;
|
|
15
|
+
const background = (0, material_1.alpha)(tertiary.light, 0.7);
|
|
16
|
+
return {
|
|
17
|
+
rubberband: {
|
|
18
|
+
height: '100%',
|
|
19
|
+
background,
|
|
20
|
+
position: 'absolute',
|
|
21
|
+
zIndex: 830,
|
|
22
|
+
textAlign: 'center',
|
|
23
|
+
},
|
|
24
|
+
rubberbandText: {
|
|
25
|
+
color: theme.palette.tertiary.contrastText,
|
|
26
|
+
},
|
|
27
|
+
};
|
|
28
|
+
});
|
|
29
|
+
function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, top = 0, sticky = false, }) {
|
|
30
|
+
const { classes } = useStyles();
|
|
31
|
+
const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
|
|
32
|
+
return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [anchorEl ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(RubberbandTooltip_1.default, { side: "left", anchorEl: anchorEl, text: leftBpOffset.map((l, idx) => ((0, jsx_runtime_1.jsx)("div", { children: (0, util_1.stringify)(l, true) }, `JSON.stringify(l)-${idx}`))) }), (0, jsx_runtime_1.jsx)(RubberbandTooltip_1.default, { side: "right", anchorEl: anchorEl, text: rightBpOffset.map((l, idx) => ((0, jsx_runtime_1.jsx)("div", { children: (0, util_1.stringify)(l, true) }, `JSON.stringify(l)-${idx}`))) })] })) : null, (0, jsx_runtime_1.jsx)("div", { className: classes.rubberband, style: { left, width }, children: numOfBpSelected ? ((0, jsx_runtime_1.jsx)(material_1.Typography, { ref: el => {
|
|
33
|
+
setAnchorEl(el);
|
|
34
|
+
}, variant: "h6", className: classes.rubberbandText, style: {
|
|
35
|
+
top,
|
|
36
|
+
position: sticky ? 'sticky' : undefined,
|
|
37
|
+
}, children: numOfBpSelected.map((n, i) => ((0, jsx_runtime_1.jsx)("div", { children: (0, util_1.getBpDisplayStr)(n) }, i))) })) : null })] }));
|
|
38
|
+
}
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.default = RubberbandTooltip;
|
|
4
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
5
|
+
const material_1 = require("@mui/material");
|
|
6
|
+
function RubberbandTooltip({ anchorEl, side, text, }) {
|
|
7
|
+
return ((0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: text, open: true, placement: side === 'left' ? 'left-start' : 'right-start', slotProps: {
|
|
8
|
+
popper: {
|
|
9
|
+
anchorEl,
|
|
10
|
+
modifiers: [
|
|
11
|
+
{
|
|
12
|
+
name: 'offset',
|
|
13
|
+
options: {
|
|
14
|
+
offset: [-30, -10],
|
|
15
|
+
},
|
|
16
|
+
},
|
|
17
|
+
],
|
|
18
|
+
},
|
|
19
|
+
}, children: (0, jsx_runtime_1.jsx)("span", {}) }));
|
|
20
|
+
}
|
|
@@ -0,0 +1,59 @@
|
|
|
1
|
+
import type React from 'react';
|
|
2
|
+
import type { LinearComparativeViewModel } from '../model';
|
|
3
|
+
interface AnchorPosition {
|
|
4
|
+
offsetX: number;
|
|
5
|
+
clientX: number;
|
|
6
|
+
clientY: number;
|
|
7
|
+
}
|
|
8
|
+
export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement | null>, model: LinearComparativeViewModel): {
|
|
9
|
+
open: boolean;
|
|
10
|
+
guideX: number | undefined;
|
|
11
|
+
mouseDown: (event: React.MouseEvent<HTMLDivElement>) => void;
|
|
12
|
+
mouseMove: (event: React.MouseEvent<HTMLDivElement>) => void;
|
|
13
|
+
mouseOut: () => void;
|
|
14
|
+
handleMenuItemClick: (_: unknown, callback: () => void) => void;
|
|
15
|
+
rubberbandOn?: undefined;
|
|
16
|
+
handleClose?: undefined;
|
|
17
|
+
leftBpOffset?: undefined;
|
|
18
|
+
rightBpOffset?: undefined;
|
|
19
|
+
anchorPosition?: undefined;
|
|
20
|
+
numOfBpSelected?: undefined;
|
|
21
|
+
width?: undefined;
|
|
22
|
+
left?: undefined;
|
|
23
|
+
} | {
|
|
24
|
+
open: boolean;
|
|
25
|
+
rubberbandOn: boolean;
|
|
26
|
+
mouseDown: (event: React.MouseEvent<HTMLDivElement>) => void;
|
|
27
|
+
mouseMove: (event: React.MouseEvent<HTMLDivElement>) => void;
|
|
28
|
+
mouseOut: () => void;
|
|
29
|
+
handleClose: () => void;
|
|
30
|
+
handleMenuItemClick: (_: unknown, callback: () => void) => void;
|
|
31
|
+
leftBpOffset: {
|
|
32
|
+
coord: number;
|
|
33
|
+
index: number;
|
|
34
|
+
refName: string;
|
|
35
|
+
oob: boolean;
|
|
36
|
+
assemblyName: string;
|
|
37
|
+
offset: number;
|
|
38
|
+
start: number;
|
|
39
|
+
end: number;
|
|
40
|
+
reversed?: boolean;
|
|
41
|
+
}[];
|
|
42
|
+
rightBpOffset: {
|
|
43
|
+
coord: number;
|
|
44
|
+
index: number;
|
|
45
|
+
refName: string;
|
|
46
|
+
oob: boolean;
|
|
47
|
+
assemblyName: string;
|
|
48
|
+
offset: number;
|
|
49
|
+
start: number;
|
|
50
|
+
end: number;
|
|
51
|
+
reversed?: boolean;
|
|
52
|
+
}[];
|
|
53
|
+
anchorPosition: AnchorPosition | undefined;
|
|
54
|
+
numOfBpSelected: number[];
|
|
55
|
+
width: number;
|
|
56
|
+
left: number;
|
|
57
|
+
guideX?: undefined;
|
|
58
|
+
};
|
|
59
|
+
export {};
|
|
@@ -0,0 +1,128 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.useRangeSelect = useRangeSelect;
|
|
4
|
+
const react_1 = require("react");
|
|
5
|
+
const mobx_1 = require("mobx");
|
|
6
|
+
const util_1 = require("./util");
|
|
7
|
+
function useRangeSelect(ref, model) {
|
|
8
|
+
const [startX, setStartX] = (0, react_1.useState)();
|
|
9
|
+
const [currentX, setCurrentX] = (0, react_1.useState)();
|
|
10
|
+
const [anchorPosition, setAnchorPosition] = (0, react_1.useState)();
|
|
11
|
+
const [guideX, setGuideX] = (0, react_1.useState)();
|
|
12
|
+
const mouseDragging = startX !== undefined && anchorPosition === undefined;
|
|
13
|
+
(0, react_1.useEffect)(() => {
|
|
14
|
+
function computeOffsets(offsetX) {
|
|
15
|
+
if (startX === undefined) {
|
|
16
|
+
return;
|
|
17
|
+
}
|
|
18
|
+
const leftPx = Math.min(startX, offsetX);
|
|
19
|
+
const rightPx = Math.max(startX, offsetX);
|
|
20
|
+
return model.views.map(view => ({
|
|
21
|
+
leftOffset: view.pxToBp(leftPx),
|
|
22
|
+
rightOffset: view.pxToBp(rightPx),
|
|
23
|
+
}));
|
|
24
|
+
}
|
|
25
|
+
function globalMouseMove(event) {
|
|
26
|
+
if (ref.current && mouseDragging) {
|
|
27
|
+
const relativeX = (0, util_1.getRelativeX)(event, ref.current);
|
|
28
|
+
setCurrentX(relativeX);
|
|
29
|
+
}
|
|
30
|
+
}
|
|
31
|
+
function globalMouseUp(event) {
|
|
32
|
+
if (startX !== undefined && ref.current) {
|
|
33
|
+
const { clientX, clientY } = event;
|
|
34
|
+
const offsetX = (0, util_1.getRelativeX)(event, ref.current);
|
|
35
|
+
setAnchorPosition({
|
|
36
|
+
offsetX,
|
|
37
|
+
clientX,
|
|
38
|
+
clientY,
|
|
39
|
+
});
|
|
40
|
+
const offsets = computeOffsets(offsetX);
|
|
41
|
+
if (offsets) {
|
|
42
|
+
(0, mobx_1.transaction)(() => {
|
|
43
|
+
for (const [idx, elt] of offsets.entries()) {
|
|
44
|
+
model.views[idx].setOffsets(elt.leftOffset, elt.rightOffset);
|
|
45
|
+
}
|
|
46
|
+
});
|
|
47
|
+
}
|
|
48
|
+
setGuideX(undefined);
|
|
49
|
+
}
|
|
50
|
+
}
|
|
51
|
+
if (mouseDragging) {
|
|
52
|
+
window.addEventListener('mousemove', globalMouseMove);
|
|
53
|
+
window.addEventListener('mouseup', globalMouseUp);
|
|
54
|
+
return () => {
|
|
55
|
+
window.removeEventListener('mousemove', globalMouseMove);
|
|
56
|
+
window.removeEventListener('mouseup', globalMouseUp);
|
|
57
|
+
};
|
|
58
|
+
}
|
|
59
|
+
return () => { };
|
|
60
|
+
}, [startX, mouseDragging, model, ref]);
|
|
61
|
+
(0, react_1.useEffect)(() => {
|
|
62
|
+
if (!mouseDragging &&
|
|
63
|
+
currentX !== undefined &&
|
|
64
|
+
startX !== undefined &&
|
|
65
|
+
Math.abs(currentX - startX) <= 3) {
|
|
66
|
+
handleClose();
|
|
67
|
+
}
|
|
68
|
+
}, [mouseDragging, currentX, startX]);
|
|
69
|
+
function mouseDown(event) {
|
|
70
|
+
event.preventDefault();
|
|
71
|
+
event.stopPropagation();
|
|
72
|
+
const relativeX = (0, util_1.getRelativeX)(event, ref.current);
|
|
73
|
+
setStartX(relativeX);
|
|
74
|
+
setCurrentX(relativeX);
|
|
75
|
+
}
|
|
76
|
+
function mouseMove(event) {
|
|
77
|
+
setGuideX((0, util_1.getRelativeX)(event, ref.current));
|
|
78
|
+
}
|
|
79
|
+
function mouseOut() {
|
|
80
|
+
setGuideX(undefined);
|
|
81
|
+
(0, mobx_1.transaction)(() => {
|
|
82
|
+
for (const view of model.views) {
|
|
83
|
+
view.setOffsets(undefined, undefined);
|
|
84
|
+
}
|
|
85
|
+
});
|
|
86
|
+
}
|
|
87
|
+
function handleClose() {
|
|
88
|
+
setAnchorPosition(undefined);
|
|
89
|
+
setStartX(undefined);
|
|
90
|
+
setCurrentX(undefined);
|
|
91
|
+
}
|
|
92
|
+
function handleMenuItemClick(_, callback) {
|
|
93
|
+
callback();
|
|
94
|
+
handleClose();
|
|
95
|
+
}
|
|
96
|
+
const open = Boolean(anchorPosition);
|
|
97
|
+
if (startX === undefined) {
|
|
98
|
+
return {
|
|
99
|
+
open,
|
|
100
|
+
guideX,
|
|
101
|
+
mouseDown,
|
|
102
|
+
mouseMove,
|
|
103
|
+
mouseOut,
|
|
104
|
+
handleMenuItemClick,
|
|
105
|
+
};
|
|
106
|
+
}
|
|
107
|
+
const right = anchorPosition ? anchorPosition.offsetX : currentX || 0;
|
|
108
|
+
const left = Math.min(right, startX);
|
|
109
|
+
const width = Math.abs(right - startX);
|
|
110
|
+
const leftBpOffset = model.views.map(view => view.pxToBp(left));
|
|
111
|
+
const rightBpOffset = model.views.map(view => view.pxToBp(left + width));
|
|
112
|
+
const numOfBpSelected = model.views.map(view => Math.ceil(width * view.bpPerPx));
|
|
113
|
+
return {
|
|
114
|
+
open,
|
|
115
|
+
rubberbandOn: true,
|
|
116
|
+
mouseDown,
|
|
117
|
+
mouseMove,
|
|
118
|
+
mouseOut,
|
|
119
|
+
handleClose,
|
|
120
|
+
handleMenuItemClick,
|
|
121
|
+
leftBpOffset,
|
|
122
|
+
rightBpOffset,
|
|
123
|
+
anchorPosition,
|
|
124
|
+
numOfBpSelected,
|
|
125
|
+
width,
|
|
126
|
+
left,
|
|
127
|
+
};
|
|
128
|
+
}
|
|
@@ -0,0 +1,6 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.getRelativeX = getRelativeX;
|
|
4
|
+
function getRelativeX(event, element) {
|
|
5
|
+
return event.clientX - ((element === null || element === void 0 ? void 0 : element.getBoundingClientRect().left) || 0);
|
|
6
|
+
}
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.default = BlockError;
|
|
4
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
5
|
+
const mui_1 = require("tss-react/mui");
|
|
6
|
+
const useStyles = (0, mui_1.makeStyles)()({
|
|
7
|
+
blockError: {
|
|
8
|
+
background: '#f1f1f1',
|
|
9
|
+
padding: 10,
|
|
10
|
+
color: 'red',
|
|
11
|
+
},
|
|
12
|
+
});
|
|
13
|
+
function BlockError({ error }) {
|
|
14
|
+
const { classes } = useStyles();
|
|
15
|
+
return (0, jsx_runtime_1.jsx)("div", { className: classes.blockError, children: `${error}` });
|
|
16
|
+
}
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
+
exports.default = BlockMessage;
|
|
4
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
5
|
+
const mui_1 = require("tss-react/mui");
|
|
6
|
+
const useStyles = (0, mui_1.makeStyles)()(theme => {
|
|
7
|
+
const bg = theme.palette.action.disabledBackground;
|
|
8
|
+
return {
|
|
9
|
+
loading: {
|
|
10
|
+
paddingLeft: '0.6em',
|
|
11
|
+
backgroundColor: theme.palette.background.default,
|
|
12
|
+
backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${bg} 5px, ${bg} 10px)`,
|
|
13
|
+
textAlign: 'center',
|
|
14
|
+
},
|
|
15
|
+
blockMessage: {
|
|
16
|
+
background: '#f1f1f1',
|
|
17
|
+
padding: 10,
|
|
18
|
+
},
|
|
19
|
+
};
|
|
20
|
+
});
|
|
21
|
+
function BlockMessage({ messageText }) {
|
|
22
|
+
const { classes } = useStyles();
|
|
23
|
+
return (0, jsx_runtime_1.jsx)("div", { className: classes.blockMessage, children: messageText });
|
|
24
|
+
}
|