@jbrowse/plugin-linear-comparative-view 3.5.0 → 3.5.1

package/dist/LGVSyntenyDisplay/model.d.ts

@@ -192,6 +192,7 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
     readonly renderDelay: number;
     readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
     readonly selectedFeatureId: string | undefined;
+    copyInfoToClipboard(feature: Feature): void;
 } & {
     readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
     readonly featureUnderMouse: Feature | undefined;
@@ -234,12 +235,12 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
     updateColorTagMap(uniqueTag: string[]): void;
     setFeatureUnderMouse(feat?: Feature): void;
     selectFeature(feature: Feature): void;
-    copyFeatureToClipboard(feature: Feature): void;
     setConfig(conf: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
     setFilterBy(filter: import("@jbrowse/plugin-alignments/src/shared/types").FilterBy): void;
     setJexlFilters(filters: string[]): void;
     setHideSmallIndels(arg: boolean): void;
 } & {
+    copyFeatureToClipboard(feature: Feature): void;
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -259,17 +260,13 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
     readonly filters: import("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain").default;
 } & {
     readonly rendererTypeName: string;
-    contextMenuItems(): ({
+    contextMenuItems(): {
         label: string;
         icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
             muiName: string;
         };
         onClick: () => void;
-    } | {
-        label: string;
-        icon: typeof import("@jbrowse/core/ui/Icons").ContentCopy;
-        onClick: () => void;
-    })[];
+    }[];
     readonly DisplayBlurb: ({ model, }: {
         model: {
             sortedBy?: import("@jbrowse/plugin-alignments/src/shared/types").SortedBy;

package/dist/LinearComparativeDisplay/stateModelFactory.js

@@ -125,11 +125,11 @@ async function renderBlockEffect(props) {
         return;
     }
     const { rpcManager, renderProps } = props;
-    const { adapterConfig, level } = renderProps;
+    const { sessionId, adapterConfig, level } = renderProps;
     const view = renderProps.view.views[level];
     const features = (await rpcManager.call('getFeats', 'CoreGetFeatures', {
         regions: view.staticBlocks.contentBlocks,
-        sessionId: 'getFeats',
+        sessionId,
         adapterConfig,
     }));
     return {

package/dist/LinearComparativeView/components/HeaderSearchBoxes.js

@@ -18,7 +18,7 @@ const useStyles = (0, mui_1.makeStyles)()(() => ({
 }));
 const HeaderSearchBoxes = (0, mobx_react_1.observer)(function ({ view, }) {
     const { classes } = useStyles();
-    const { assemblyNames, coarseTotalBp } = view;
-    return ((0, jsx_runtime_1.jsxs)("span", { className: classes.searchBox, children: [(0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.SearchBox, { model: view, showHelp: false }), (0, jsx_runtime_1.jsxs)(material_1.Typography, { variant: "body2", color: "textSecondary", className: classes.bp, children: [assemblyNames.join(','), " ", (0, util_1.getBpDisplayStr)(coarseTotalBp)] })] }));
+    const { assemblyDisplayNames, coarseTotalBp } = view;
+    return ((0, jsx_runtime_1.jsxs)("span", { className: classes.searchBox, children: [(0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.SearchBox, { model: view, showHelp: false }), (0, jsx_runtime_1.jsxs)(material_1.Typography, { variant: "body2", color: "textSecondary", className: classes.bp, children: [assemblyDisplayNames.join(','), " ", (0, util_1.getBpDisplayStr)(coarseTotalBp)] })] }));
 });
 exports.default = HeaderSearchBoxes;

package/dist/LinearComparativeView/model.d.ts

@@ -77,6 +77,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
         readonly isTopLevelView: import("@jbrowse/core/util").AbstractViewModel | undefined;
         readonly stickyViewHeaders: boolean | undefined;
         readonly rubberbandTop: number;
@@ -393,6 +394,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
         readonly isTopLevelView: import("@jbrowse/core/util").AbstractViewModel | undefined;
         readonly stickyViewHeaders: boolean | undefined;
         readonly rubberbandTop: number;

package/dist/LinearSyntenyView/model.d.ts

@@ -77,6 +77,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
         readonly isTopLevelView: import("@jbrowse/core/util").AbstractViewModel | undefined;
         readonly stickyViewHeaders: boolean | undefined;
         readonly rubberbandTop: number;
@@ -462,6 +463,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
         readonly isTopLevelView: import("@jbrowse/core/util").AbstractViewModel | undefined;
         readonly stickyViewHeaders: boolean | undefined;
         readonly rubberbandTop: number;

package/esm/LGVSyntenyDisplay/model.d.ts

@@ -192,6 +192,7 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
     readonly renderDelay: number;
     readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
     readonly selectedFeatureId: string | undefined;
+    copyInfoToClipboard(feature: Feature): void;
 } & {
     readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
     readonly featureUnderMouse: Feature | undefined;
@@ -234,12 +235,12 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
     updateColorTagMap(uniqueTag: string[]): void;
     setFeatureUnderMouse(feat?: Feature): void;
     selectFeature(feature: Feature): void;
-    copyFeatureToClipboard(feature: Feature): void;
     setConfig(conf: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
     setFilterBy(filter: import("@jbrowse/plugin-alignments/src/shared/types").FilterBy): void;
     setJexlFilters(filters: string[]): void;
     setHideSmallIndels(arg: boolean): void;
 } & {
+    copyFeatureToClipboard(feature: Feature): void;
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -259,17 +260,13 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
     readonly filters: import("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain").default;
 } & {
     readonly rendererTypeName: string;
-    contextMenuItems(): ({
+    contextMenuItems(): {
         label: string;
         icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
             muiName: string;
         };
         onClick: () => void;
-    } | {
-        label: string;
-        icon: typeof import("@jbrowse/core/ui/Icons").ContentCopy;
-        onClick: () => void;
-    })[];
+    }[];
     readonly DisplayBlurb: ({ model, }: {
         model: {
             sortedBy?: import("@jbrowse/plugin-alignments/src/shared/types").SortedBy;

package/esm/LinearComparativeDisplay/stateModelFactory.js

@@ -123,11 +123,11 @@ async function renderBlockEffect(props) {
         return;
     }
     const { rpcManager, renderProps } = props;
-    const { adapterConfig, level } = renderProps;
+    const { sessionId, adapterConfig, level } = renderProps;
     const view = renderProps.view.views[level];
     const features = (await rpcManager.call('getFeats', 'CoreGetFeatures', {
         regions: view.staticBlocks.contentBlocks,
-        sessionId: 'getFeats',
+        sessionId,
         adapterConfig,
     }));
     return {

package/esm/LinearComparativeView/components/HeaderSearchBoxes.js

@@ -16,7 +16,7 @@ const useStyles = makeStyles()(() => ({
 }));
 const HeaderSearchBoxes = observer(function ({ view, }) {
     const { classes } = useStyles();
-    const { assemblyNames, coarseTotalBp } = view;
-    return (_jsxs("span", { className: classes.searchBox, children: [_jsx(SearchBox, { model: view, showHelp: false }), _jsxs(Typography, { variant: "body2", color: "textSecondary", className: classes.bp, children: [assemblyNames.join(','), " ", getBpDisplayStr(coarseTotalBp)] })] }));
+    const { assemblyDisplayNames, coarseTotalBp } = view;
+    return (_jsxs("span", { className: classes.searchBox, children: [_jsx(SearchBox, { model: view, showHelp: false }), _jsxs(Typography, { variant: "body2", color: "textSecondary", className: classes.bp, children: [assemblyDisplayNames.join(','), " ", getBpDisplayStr(coarseTotalBp)] })] }));
 });
 export default HeaderSearchBoxes;

package/esm/LinearComparativeView/model.d.ts

@@ -77,6 +77,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
         readonly isTopLevelView: import("@jbrowse/core/util").AbstractViewModel | undefined;
         readonly stickyViewHeaders: boolean | undefined;
         readonly rubberbandTop: number;
@@ -393,6 +394,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
         readonly isTopLevelView: import("@jbrowse/core/util").AbstractViewModel | undefined;
         readonly stickyViewHeaders: boolean | undefined;
         readonly rubberbandTop: number;

package/esm/LinearSyntenyView/model.d.ts

@@ -77,6 +77,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
         readonly isTopLevelView: import("@jbrowse/core/util").AbstractViewModel | undefined;
         readonly stickyViewHeaders: boolean | undefined;
         readonly rubberbandTop: number;
@@ -462,6 +463,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly assemblyDisplayNames: string[];
         readonly isTopLevelView: import("@jbrowse/core/util").AbstractViewModel | undefined;
         readonly stickyViewHeaders: boolean | undefined;
         readonly rubberbandTop: number;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-comparative-view",
-  "version": "3.5.0",
+  "version": "3.5.1",
   "description": "JBrowse 2 linear comparative view",
   "keywords": [
     "jbrowse",
@@ -36,9 +36,9 @@
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
-    "@jbrowse/core": "^3.5.0",
-    "@jbrowse/plugin-alignments": "^3.5.0",
-    "@jbrowse/plugin-linear-genome-view": "^3.5.0",
+    "@jbrowse/core": "^3.5.1",
+    "@jbrowse/plugin-alignments": "^3.5.1",
+    "@jbrowse/plugin-linear-genome-view": "^3.5.1",
     "@mui/icons-material": "^7.0.0",
     "@mui/material": "^7.0.0",
     "copy-to-clipboard": "^3.3.1",
@@ -59,5 +59,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "8a8aa0aab2229dece106a5715a767e649e2fe92b"
+  "gitHead": "cb8859da9d838ad2594964777c5c54f385d98f5e"
 }