@jbrowse/plugin-linear-comparative-view 3.2.0 → 3.3.0

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Files changed (7) hide show
  1. package/dist/LinearComparativeView/model.d.ts +2 -0
  2. package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyOpenCustomTrack.js +2 -2
  3. package/dist/LinearSyntenyView/model.d.ts +2 -0
  4. package/esm/LinearComparativeView/model.d.ts +2 -0
  5. package/esm/LinearSyntenyView/components/ImportForm/ImportSyntenyOpenCustomTrack.js +3 -3
  6. package/esm/LinearSyntenyView/model.d.ts +2 -0
  7. package/package.json +7 -7
package/dist/LinearComparativeView/model.d.ts CHANGED
@@ -193,6 +193,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  input: string;
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  assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
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  }): Promise<void>;
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+ navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string): Promise<void>;
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  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
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  navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
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  navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
@@ -507,6 +508,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  input: string;
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  assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
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  }): Promise<void>;
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+ navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string): Promise<void>;
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  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
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  navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
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  navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyOpenCustomTrack.js CHANGED
@@ -73,7 +73,7 @@ const ImportSyntenyOpenCustomTrack = (0, mobx_react_1.observer)(function ({ mode
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  };
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  return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { style: { padding: 12 }, children: [error ? (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error }) : null, (0, jsx_runtime_1.jsx)(material_1.Typography, { style: { textAlign: 'center' }, children: "Add a .paf (minimap2), .delta (Mummer), .chain (UCSC liftover), .anchors or .anchors.simple (MCScan), or .pif.gz (jbrowse CLI make-pif) file to view. These file types can also be gzipped." }), (0, jsx_runtime_1.jsx)(material_1.RadioGroup, { value: radioOption, onChange: event => {
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  setValue(event.target.value);
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- }, children: (0, jsx_runtime_1.jsx)(material_1.Grid2, { container: true, justifyContent: "center", children: [
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+ }, children: (0, jsx_runtime_1.jsx)(material_1.Grid, { container: true, justifyContent: "center", children: [
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  '.paf',
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  '.delta',
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  '.out',
@@ -81,7 +81,7 @@ const ImportSyntenyOpenCustomTrack = (0, mobx_react_1.observer)(function ({ mode
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  '.anchors',
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  '.anchors.simple',
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  '.pif.gz',
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- ].map(extension => ((0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { value: extension, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: extension }, extension))) }) }), (0, jsx_runtime_1.jsx)(material_1.Grid2, { container: true, justifyContent: "center", children: radioOption === '.paf' ||
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+ ].map(extension => ((0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { value: extension, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: extension }, extension))) }) }), (0, jsx_runtime_1.jsx)(material_1.Grid, { container: true, justifyContent: "center", children: radioOption === '.paf' ||
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  radioOption === '.out' ||
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  radioOption === '.delta' ||
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  radioOption === '.chain' ||
package/dist/LinearSyntenyView/model.d.ts CHANGED
@@ -210,6 +210,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  input: string;
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  assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
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  }): Promise<void>;
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+ navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string): Promise<void>;
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  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
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  navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
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  navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
@@ -591,6 +592,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  input: string;
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  assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
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  }): Promise<void>;
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+ navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string): Promise<void>;
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  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
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  navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
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  navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
package/esm/LinearComparativeView/model.d.ts CHANGED
@@ -193,6 +193,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  input: string;
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  assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
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  }): Promise<void>;
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+ navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string): Promise<void>;
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  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
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  navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
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  navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
@@ -507,6 +508,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  input: string;
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  assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
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  }): Promise<void>;
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+ navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string): Promise<void>;
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  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
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  navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
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  navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
package/esm/LinearSyntenyView/components/ImportForm/ImportSyntenyOpenCustomTrack.js CHANGED
@@ -2,7 +2,7 @@ import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
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  import { useEffect, useState } from 'react';
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  import { ErrorMessage, FileSelector } from '@jbrowse/core/ui';
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  import HelpIcon from '@mui/icons-material/Help';
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- import { Button, FormControlLabel, Grid2, Paper, Radio, RadioGroup, Tooltip, Typography, } from '@mui/material';
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+ import { Button, FormControlLabel, Grid, Paper, Radio, RadioGroup, Tooltip, Typography, } from '@mui/material';
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  import { observer } from 'mobx-react';
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  import { getAdapter } from './getAdapter';
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  import { basename, extName, getName, stripGz } from './util';
@@ -68,7 +68,7 @@ const ImportSyntenyOpenCustomTrack = observer(function ({ model, assembly1, asse
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  };
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  return (_jsxs(Paper, { style: { padding: 12 }, children: [error ? _jsx(ErrorMessage, { error: error }) : null, _jsx(Typography, { style: { textAlign: 'center' }, children: "Add a .paf (minimap2), .delta (Mummer), .chain (UCSC liftover), .anchors or .anchors.simple (MCScan), or .pif.gz (jbrowse CLI make-pif) file to view. These file types can also be gzipped." }), _jsx(RadioGroup, { value: radioOption, onChange: event => {
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  setValue(event.target.value);
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- }, children: _jsx(Grid2, { container: true, justifyContent: "center", children: [
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+ }, children: _jsx(Grid, { container: true, justifyContent: "center", children: [
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  '.paf',
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  '.delta',
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  '.out',
@@ -76,7 +76,7 @@ const ImportSyntenyOpenCustomTrack = observer(function ({ model, assembly1, asse
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  '.anchors',
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  '.anchors.simple',
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  '.pif.gz',
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- ].map(extension => (_jsx(FormControlLabel, { value: extension, control: _jsx(Radio, {}), label: extension }, extension))) }) }), _jsx(Grid2, { container: true, justifyContent: "center", children: radioOption === '.paf' ||
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+ ].map(extension => (_jsx(FormControlLabel, { value: extension, control: _jsx(Radio, {}), label: extension }, extension))) }) }), _jsx(Grid, { container: true, justifyContent: "center", children: radioOption === '.paf' ||
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  radioOption === '.out' ||
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  radioOption === '.delta' ||
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  radioOption === '.chain' ||
package/esm/LinearSyntenyView/model.d.ts CHANGED
@@ -210,6 +210,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  input: string;
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  assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
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  }): Promise<void>;
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+ navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string): Promise<void>;
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  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
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  navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
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  navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
@@ -591,6 +592,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  input: string;
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  assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
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  }): Promise<void>;
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+ navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string): Promise<void>;
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  navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
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  navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
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  navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-linear-comparative-view",
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- "version": "3.2.0",
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+ "version": "3.3.0",
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  "description": "JBrowse 2 linear comparative view",
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  "keywords": [
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  "jbrowse",
@@ -36,11 +36,11 @@
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  "clean": "rimraf dist esm *.tsbuildinfo"
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  },
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  "dependencies": {
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- "@jbrowse/core": "^3.2.0",
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- "@jbrowse/plugin-alignments": "^3.2.0",
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- "@jbrowse/plugin-linear-genome-view": "^3.2.0",
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- "@mui/icons-material": "^6.0.0",
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- "@mui/material": "^6.0.0",
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+ "@jbrowse/core": "^3.3.0",
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+ "@jbrowse/plugin-alignments": "^3.3.0",
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+ "@jbrowse/plugin-linear-genome-view": "^3.3.0",
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+ "@mui/icons-material": "^7.0.0",
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+ "@mui/material": "^7.0.0",
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  "copy-to-clipboard": "^3.3.1",
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  "file-saver": "^2.0.0",
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  "mobx": "^6.0.0",
@@ -59,5 +59,5 @@
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  "publishConfig": {
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  "access": "public"
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  },
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- "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
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+ "gitHead": "0bb64d8cc7ecdd167515308b31eec3d9acbc59e4"
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  }