@jbrowse/plugin-linear-comparative-view 3.0.5 → 3.2.0

package/esm/LinearSyntenyView/model.d.ts

@@ -66,6 +66,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
         colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
         showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
     }, {
         width: number;
     } & {
@@ -87,10 +88,15 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
         rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
     } & {
+        readonly pinnedTracks: any[];
+        readonly unpinnedTracks: any[];
         readonly trackLabelsSetting: any;
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly stickyViewHeaders: boolean;
+        readonly rubberbandTop: number;
+        readonly pinnedTracksTop: number;
     } & {
         scaleBarDisplayPrefix(): string | undefined;
         MiniControlsComponent(): React.FC<any>;
@@ -176,6 +182,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         setDraggingTrackId(idx?: string): void;
         setScaleFactor(factor: number): void;
         clearView(): void;
+        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState): void;
         exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").ExportSvgOptions): Promise<void>;
     } & {
         slide: (viewWidths: number) => void;
@@ -196,7 +203,6 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly coarseVisibleLocStrings: string;
     } & {
         setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-        afterAttach(): void;
     } & {
         moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
         navToLocString(input: string, optAssemblyName?: string): Promise<void>;
@@ -242,6 +248,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         } | undefined;
     } & {
         afterCreate(): void;
+        afterAttach(): void;
     }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
         displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -264,7 +271,28 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
         colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
         showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    }>>, import("mobx-state-tree")._NotCustomized>>;
+        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
+    }>>, {
+        id: string;
+        type: string;
+        displayName: string | undefined;
+        tracks: any[];
+        minimized: boolean;
+        displayedRegions: import("@jbrowse/core/util").Region[];
+        offsetPx: number;
+        bpPerPx: number;
+        hideHeader: boolean;
+        hideHeaderOverview: boolean;
+        hideNoTracksActive: boolean;
+        trackSelectorType: string;
+        showCenterLine: boolean;
+        showCytobandsSetting: boolean;
+        trackLabels: string;
+        showGridlines: boolean;
+        highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[];
+        colorByCDS: boolean;
+        showTrackOutlines: boolean;
+    }>>;
     viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
 } & {
     type: import("mobx-state-tree").ISimpleType<"LinearSyntenyView">;
@@ -332,10 +360,10 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         type?: undefined;
     } | {
         label: string;
-        onClick: () => void;
         checked: boolean;
         type: string;
         description: string;
+        onClick: () => void;
         icon?: undefined;
     } | {
         label: string;
@@ -419,6 +447,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
         colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
         showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
     }, {
         width: number;
     } & {
@@ -440,10 +469,15 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
         rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
     } & {
+        readonly pinnedTracks: any[];
+        readonly unpinnedTracks: any[];
         readonly trackLabelsSetting: any;
         readonly width: number;
         readonly interRegionPaddingWidth: number;
         readonly assemblyNames: string[];
+        readonly stickyViewHeaders: boolean;
+        readonly rubberbandTop: number;
+        readonly pinnedTracksTop: number;
     } & {
         scaleBarDisplayPrefix(): string | undefined;
         MiniControlsComponent(): React.FC<any>;
@@ -529,6 +563,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         setDraggingTrackId(idx?: string): void;
         setScaleFactor(factor: number): void;
         clearView(): void;
+        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState): void;
         exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").ExportSvgOptions): Promise<void>;
     } & {
         slide: (viewWidths: number) => void;
@@ -549,7 +584,6 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         readonly coarseVisibleLocStrings: string;
     } & {
         setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-        afterAttach(): void;
     } & {
         moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
         navToLocString(input: string, optAssemblyName?: string): Promise<void>;
@@ -595,6 +629,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         } | undefined;
     } & {
         afterCreate(): void;
+        afterAttach(): void;
     }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
         displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -617,7 +652,28 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
         colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
         showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    }>>, import("mobx-state-tree")._NotCustomized>>;
+        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
+    }>>, {
+        id: string;
+        type: string;
+        displayName: string | undefined;
+        tracks: any[];
+        minimized: boolean;
+        displayedRegions: import("@jbrowse/core/util").Region[];
+        offsetPx: number;
+        bpPerPx: number;
+        hideHeader: boolean;
+        hideHeaderOverview: boolean;
+        hideNoTracksActive: boolean;
+        trackSelectorType: string;
+        showCenterLine: boolean;
+        showCytobandsSetting: boolean;
+        trackLabels: string;
+        showGridlines: boolean;
+        highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[];
+        colorByCDS: boolean;
+        showTrackOutlines: boolean;
+    }>>;
     viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
 }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type LinearSyntenyViewStateModel = ReturnType<typeof stateModelFactory>;

package/esm/LinearSyntenyView/model.js

@@ -73,12 +73,12 @@ export default function stateModelFactory(pluginManager) {
                     },
                     {
                         label: 'Draw CIGAR',
-                        onClick: () => {
-                            self.setDrawCIGAR(!self.drawCIGAR);
-                        },
                         checked: self.drawCIGAR,
                         type: 'checkbox',
                         description: 'Draws per-base CIGAR level alignments',
+                        onClick: () => {
+                            self.setDrawCIGAR(!self.drawCIGAR);
+                        },
                     },
                     {
                         label: 'Link views',

package/esm/LinearSyntenyViewHelper/stateModelFactory.js

@@ -48,9 +48,9 @@ export function linearSyntenyViewHelperModelFactory(pluginManager) {
             const config = resolveIdentifier(schema, getRoot(self), trackId);
             const shownTracks = self.tracks.filter(t => t.configuration === config);
             transaction(() => {
-                shownTracks.forEach(t => {
+                for (const t of shownTracks) {
                     self.tracks.remove(t);
-                });
+                }
             });
             return shownTracks.length;
         },

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-comparative-view",
-  "version": "3.0.5",
+  "version": "3.2.0",
   "description": "JBrowse 2 linear comparative view",
   "keywords": [
     "jbrowse",
@@ -36,9 +36,9 @@
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
-    "@jbrowse/core": "^3.0.5",
-    "@jbrowse/plugin-alignments": "^3.0.5",
-    "@jbrowse/plugin-linear-genome-view": "^3.0.5",
+    "@jbrowse/core": "^3.2.0",
+    "@jbrowse/plugin-alignments": "^3.2.0",
+    "@jbrowse/plugin-linear-genome-view": "^3.2.0",
     "@mui/icons-material": "^6.0.0",
     "@mui/material": "^6.0.0",
     "copy-to-clipboard": "^3.3.1",
@@ -59,5 +59,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "a03749efe19e51609922272b845a331897346789"
+  "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
 }