@jbrowse/plugin-linear-comparative-view 2.6.1 → 2.6.3

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Files changed (209) hide show
  1. package/dist/LGVSyntenyDisplay/configSchemaF.d.ts +1 -3
  2. package/dist/LGVSyntenyDisplay/configSchemaF.js +0 -1
  3. package/dist/LGVSyntenyDisplay/index.js +0 -1
  4. package/dist/LGVSyntenyDisplay/model.d.ts +17 -76
  5. package/dist/LGVSyntenyDisplay/model.js +22 -4
  6. package/dist/LaunchLinearSyntenyView.js +0 -1
  7. package/dist/LinearComparativeDisplay/configSchemaF.js +0 -1
  8. package/dist/LinearComparativeDisplay/index.js +0 -1
  9. package/dist/LinearComparativeDisplay/stateModelFactory.js +0 -1
  10. package/dist/LinearComparativeView/components/Header.js +11 -2
  11. package/dist/LinearComparativeView/components/LinearComparativeView.js +0 -1
  12. package/dist/LinearComparativeView/components/Rubberband.js +11 -33
  13. package/dist/LinearComparativeView/components/VerticalGuide.d.ts +8 -0
  14. package/dist/LinearComparativeView/components/VerticalGuide.js +33 -0
  15. package/dist/LinearComparativeView/index.js +0 -1
  16. package/dist/LinearComparativeView/model.d.ts +9 -15
  17. package/dist/LinearComparativeView/model.js +0 -1
  18. package/dist/LinearReadVsRef/LinearReadVsRef.js +0 -1
  19. package/dist/LinearReadVsRef/index.js +0 -1
  20. package/dist/LinearSyntenyDisplay/afterAttach.js +0 -1
  21. package/dist/LinearSyntenyDisplay/components/Component.js +0 -1
  22. package/dist/LinearSyntenyDisplay/components/LinearSyntenyRendering.js +0 -1
  23. package/dist/LinearSyntenyDisplay/components/SyntenyTooltip.js +0 -1
  24. package/dist/LinearSyntenyDisplay/components/util.js +0 -1
  25. package/dist/LinearSyntenyDisplay/configSchemaF.js +0 -1
  26. package/dist/LinearSyntenyDisplay/drawSynteny.js +0 -1
  27. package/dist/LinearSyntenyDisplay/index.js +0 -1
  28. package/dist/LinearSyntenyDisplay/model.js +0 -1
  29. package/dist/LinearSyntenyView/components/ExportSvgDialog.js +0 -1
  30. package/dist/LinearSyntenyView/components/Icons.js +0 -1
  31. package/dist/LinearSyntenyView/components/ImportCustomTrack.js +0 -1
  32. package/dist/LinearSyntenyView/components/ImportForm.js +0 -1
  33. package/dist/LinearSyntenyView/components/ImportSyntenyTrackSelector.js +0 -1
  34. package/dist/LinearSyntenyView/components/LinearSyntenyView.js +0 -1
  35. package/dist/LinearSyntenyView/index.js +0 -1
  36. package/dist/LinearSyntenyView/model.d.ts +9 -9
  37. package/dist/LinearSyntenyView/model.js +0 -1
  38. package/dist/LinearSyntenyView/svgcomponents/SVGBackground.js +2 -2
  39. package/dist/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js +0 -1
  40. package/dist/SyntenyFeatureDetail/SyntenyFeatureDetail.js +0 -1
  41. package/dist/SyntenyFeatureDetail/index.js +0 -1
  42. package/dist/SyntenyTrack/configSchema.js +0 -1
  43. package/dist/SyntenyTrack/index.js +0 -1
  44. package/dist/index.js +0 -1
  45. package/dist/util.js +0 -1
  46. package/esm/LGVSyntenyDisplay/configSchemaF.d.ts +1 -3
  47. package/esm/LGVSyntenyDisplay/configSchemaF.js +0 -1
  48. package/esm/LGVSyntenyDisplay/index.js +0 -1
  49. package/esm/LGVSyntenyDisplay/model.d.ts +17 -76
  50. package/esm/LGVSyntenyDisplay/model.js +23 -5
  51. package/esm/LaunchLinearSyntenyView.js +0 -1
  52. package/esm/LinearComparativeDisplay/configSchemaF.js +0 -1
  53. package/esm/LinearComparativeDisplay/index.js +0 -1
  54. package/esm/LinearComparativeDisplay/stateModelFactory.js +0 -1
  55. package/esm/LinearComparativeView/components/Header.js +11 -2
  56. package/esm/LinearComparativeView/components/LinearComparativeView.js +0 -1
  57. package/esm/LinearComparativeView/components/Rubberband.js +8 -33
  58. package/esm/LinearComparativeView/components/VerticalGuide.d.ts +8 -0
  59. package/esm/LinearComparativeView/components/VerticalGuide.js +28 -0
  60. package/esm/LinearComparativeView/index.js +0 -1
  61. package/esm/LinearComparativeView/model.d.ts +9 -15
  62. package/esm/LinearComparativeView/model.js +0 -1
  63. package/esm/LinearReadVsRef/LinearReadVsRef.js +0 -1
  64. package/esm/LinearReadVsRef/index.js +0 -1
  65. package/esm/LinearSyntenyDisplay/afterAttach.js +0 -1
  66. package/esm/LinearSyntenyDisplay/components/Component.js +0 -1
  67. package/esm/LinearSyntenyDisplay/components/LinearSyntenyRendering.js +0 -1
  68. package/esm/LinearSyntenyDisplay/components/SyntenyTooltip.js +0 -1
  69. package/esm/LinearSyntenyDisplay/components/util.js +0 -1
  70. package/esm/LinearSyntenyDisplay/configSchemaF.js +0 -1
  71. package/esm/LinearSyntenyDisplay/drawSynteny.js +0 -1
  72. package/esm/LinearSyntenyDisplay/index.js +0 -1
  73. package/esm/LinearSyntenyDisplay/model.js +0 -1
  74. package/esm/LinearSyntenyView/components/ExportSvgDialog.js +0 -1
  75. package/esm/LinearSyntenyView/components/Icons.js +0 -1
  76. package/esm/LinearSyntenyView/components/ImportCustomTrack.js +0 -1
  77. package/esm/LinearSyntenyView/components/ImportForm.js +0 -1
  78. package/esm/LinearSyntenyView/components/ImportSyntenyTrackSelector.js +0 -1
  79. package/esm/LinearSyntenyView/components/LinearSyntenyView.js +0 -1
  80. package/esm/LinearSyntenyView/index.js +0 -1
  81. package/esm/LinearSyntenyView/model.d.ts +9 -9
  82. package/esm/LinearSyntenyView/model.js +0 -1
  83. package/esm/LinearSyntenyView/svgcomponents/SVGBackground.js +2 -2
  84. package/esm/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js +0 -1
  85. package/esm/SyntenyFeatureDetail/SyntenyFeatureDetail.js +0 -1
  86. package/esm/SyntenyFeatureDetail/index.js +0 -1
  87. package/esm/SyntenyTrack/configSchema.js +0 -1
  88. package/esm/SyntenyTrack/index.js +0 -1
  89. package/esm/index.js +0 -1
  90. package/esm/util.js +0 -1
  91. package/package.json +4 -4
  92. package/dist/LGVSyntenyDisplay/configSchemaF.js.map +0 -1
  93. package/dist/LGVSyntenyDisplay/index.js.map +0 -1
  94. package/dist/LGVSyntenyDisplay/model.js.map +0 -1
  95. package/dist/LaunchLinearSyntenyView.js.map +0 -1
  96. package/dist/LinearComparativeDisplay/configSchemaF.js.map +0 -1
  97. package/dist/LinearComparativeDisplay/index.js.map +0 -1
  98. package/dist/LinearComparativeDisplay/stateModelFactory.js.map +0 -1
  99. package/dist/LinearComparativeView/components/Header.js.map +0 -1
  100. package/dist/LinearComparativeView/components/LinearComparativeView.js.map +0 -1
  101. package/dist/LinearComparativeView/components/Rubberband.js.map +0 -1
  102. package/dist/LinearComparativeView/index.js.map +0 -1
  103. package/dist/LinearComparativeView/model.js.map +0 -1
  104. package/dist/LinearReadVsRef/LinearReadVsRef.js.map +0 -1
  105. package/dist/LinearReadVsRef/index.js.map +0 -1
  106. package/dist/LinearSyntenyDisplay/afterAttach.js.map +0 -1
  107. package/dist/LinearSyntenyDisplay/components/Component.js.map +0 -1
  108. package/dist/LinearSyntenyDisplay/components/LinearSyntenyRendering.js.map +0 -1
  109. package/dist/LinearSyntenyDisplay/components/SyntenyTooltip.js.map +0 -1
  110. package/dist/LinearSyntenyDisplay/components/util.js.map +0 -1
  111. package/dist/LinearSyntenyDisplay/configSchemaF.js.map +0 -1
  112. package/dist/LinearSyntenyDisplay/drawSynteny.js.map +0 -1
  113. package/dist/LinearSyntenyDisplay/index.js.map +0 -1
  114. package/dist/LinearSyntenyDisplay/model.js.map +0 -1
  115. package/dist/LinearSyntenyView/components/ExportSvgDialog.js.map +0 -1
  116. package/dist/LinearSyntenyView/components/Icons.js.map +0 -1
  117. package/dist/LinearSyntenyView/components/ImportCustomTrack.js.map +0 -1
  118. package/dist/LinearSyntenyView/components/ImportForm.js.map +0 -1
  119. package/dist/LinearSyntenyView/components/ImportSyntenyTrackSelector.js.map +0 -1
  120. package/dist/LinearSyntenyView/components/LinearSyntenyView.js.map +0 -1
  121. package/dist/LinearSyntenyView/index.js.map +0 -1
  122. package/dist/LinearSyntenyView/model.js.map +0 -1
  123. package/dist/LinearSyntenyView/svgcomponents/SVGBackground.js.map +0 -1
  124. package/dist/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js.map +0 -1
  125. package/dist/SyntenyFeatureDetail/SyntenyFeatureDetail.js.map +0 -1
  126. package/dist/SyntenyFeatureDetail/index.js.map +0 -1
  127. package/dist/SyntenyTrack/configSchema.js.map +0 -1
  128. package/dist/SyntenyTrack/index.js.map +0 -1
  129. package/dist/index.js.map +0 -1
  130. package/dist/util.js.map +0 -1
  131. package/esm/LGVSyntenyDisplay/configSchemaF.js.map +0 -1
  132. package/esm/LGVSyntenyDisplay/index.js.map +0 -1
  133. package/esm/LGVSyntenyDisplay/model.js.map +0 -1
  134. package/esm/LaunchLinearSyntenyView.js.map +0 -1
  135. package/esm/LinearComparativeDisplay/configSchemaF.js.map +0 -1
  136. package/esm/LinearComparativeDisplay/index.js.map +0 -1
  137. package/esm/LinearComparativeDisplay/stateModelFactory.js.map +0 -1
  138. package/esm/LinearComparativeView/components/Header.js.map +0 -1
  139. package/esm/LinearComparativeView/components/LinearComparativeView.js.map +0 -1
  140. package/esm/LinearComparativeView/components/Rubberband.js.map +0 -1
  141. package/esm/LinearComparativeView/index.js.map +0 -1
  142. package/esm/LinearComparativeView/model.js.map +0 -1
  143. package/esm/LinearReadVsRef/LinearReadVsRef.js.map +0 -1
  144. package/esm/LinearReadVsRef/index.js.map +0 -1
  145. package/esm/LinearSyntenyDisplay/afterAttach.js.map +0 -1
  146. package/esm/LinearSyntenyDisplay/components/Component.js.map +0 -1
  147. package/esm/LinearSyntenyDisplay/components/LinearSyntenyRendering.js.map +0 -1
  148. package/esm/LinearSyntenyDisplay/components/SyntenyTooltip.js.map +0 -1
  149. package/esm/LinearSyntenyDisplay/components/util.js.map +0 -1
  150. package/esm/LinearSyntenyDisplay/configSchemaF.js.map +0 -1
  151. package/esm/LinearSyntenyDisplay/drawSynteny.js.map +0 -1
  152. package/esm/LinearSyntenyDisplay/index.js.map +0 -1
  153. package/esm/LinearSyntenyDisplay/model.js.map +0 -1
  154. package/esm/LinearSyntenyView/components/ExportSvgDialog.js.map +0 -1
  155. package/esm/LinearSyntenyView/components/Icons.js.map +0 -1
  156. package/esm/LinearSyntenyView/components/ImportCustomTrack.js.map +0 -1
  157. package/esm/LinearSyntenyView/components/ImportForm.js.map +0 -1
  158. package/esm/LinearSyntenyView/components/ImportSyntenyTrackSelector.js.map +0 -1
  159. package/esm/LinearSyntenyView/components/LinearSyntenyView.js.map +0 -1
  160. package/esm/LinearSyntenyView/index.js.map +0 -1
  161. package/esm/LinearSyntenyView/model.js.map +0 -1
  162. package/esm/LinearSyntenyView/svgcomponents/SVGBackground.js.map +0 -1
  163. package/esm/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js.map +0 -1
  164. package/esm/SyntenyFeatureDetail/SyntenyFeatureDetail.js.map +0 -1
  165. package/esm/SyntenyFeatureDetail/index.js.map +0 -1
  166. package/esm/SyntenyTrack/configSchema.js.map +0 -1
  167. package/esm/SyntenyTrack/index.js.map +0 -1
  168. package/esm/index.js.map +0 -1
  169. package/esm/util.js.map +0 -1
  170. package/src/LGVSyntenyDisplay/configSchemaF.ts +0 -22
  171. package/src/LGVSyntenyDisplay/index.ts +0 -20
  172. package/src/LGVSyntenyDisplay/model.ts +0 -177
  173. package/src/LaunchLinearSyntenyView.ts +0 -86
  174. package/src/LinearComparativeDisplay/configSchemaF.ts +0 -22
  175. package/src/LinearComparativeDisplay/index.ts +0 -21
  176. package/src/LinearComparativeDisplay/stateModelFactory.ts +0 -212
  177. package/src/LinearComparativeView/components/Header.tsx +0 -103
  178. package/src/LinearComparativeView/components/LinearComparativeView.tsx +0 -152
  179. package/src/LinearComparativeView/components/Rubberband.tsx +0 -329
  180. package/src/LinearComparativeView/index.ts +0 -15
  181. package/src/LinearComparativeView/model.ts +0 -395
  182. package/src/LinearReadVsRef/LinearReadVsRef.tsx +0 -360
  183. package/src/LinearReadVsRef/index.ts +0 -58
  184. package/src/LinearSyntenyDisplay/afterAttach.ts +0 -149
  185. package/src/LinearSyntenyDisplay/components/Component.tsx +0 -75
  186. package/src/LinearSyntenyDisplay/components/LinearSyntenyRendering.tsx +0 -200
  187. package/src/LinearSyntenyDisplay/components/SyntenyTooltip.tsx +0 -82
  188. package/src/LinearSyntenyDisplay/components/util.ts +0 -142
  189. package/src/LinearSyntenyDisplay/configSchemaF.ts +0 -38
  190. package/src/LinearSyntenyDisplay/drawSynteny.ts +0 -266
  191. package/src/LinearSyntenyDisplay/index.ts +0 -21
  192. package/src/LinearSyntenyDisplay/model.ts +0 -187
  193. package/src/LinearSyntenyView/components/ExportSvgDialog.tsx +0 -148
  194. package/src/LinearSyntenyView/components/Icons.tsx +0 -24
  195. package/src/LinearSyntenyView/components/ImportCustomTrack.tsx +0 -262
  196. package/src/LinearSyntenyView/components/ImportForm.tsx +0 -221
  197. package/src/LinearSyntenyView/components/ImportSyntenyTrackSelector.tsx +0 -82
  198. package/src/LinearSyntenyView/components/LinearSyntenyView.tsx +0 -20
  199. package/src/LinearSyntenyView/index.ts +0 -15
  200. package/src/LinearSyntenyView/model.test.ts +0 -1605
  201. package/src/LinearSyntenyView/model.ts +0 -169
  202. package/src/LinearSyntenyView/svgcomponents/SVGBackground.tsx +0 -21
  203. package/src/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.tsx +0 -176
  204. package/src/SyntenyFeatureDetail/SyntenyFeatureDetail.tsx +0 -64
  205. package/src/SyntenyFeatureDetail/index.ts +0 -36
  206. package/src/SyntenyTrack/configSchema.ts +0 -23
  207. package/src/SyntenyTrack/index.tsx +0 -15
  208. package/src/index.tsx +0 -42
  209. package/src/util.ts +0 -124
@@ -1,1605 +0,0 @@
1
- import PluginManager from '@jbrowse/core/PluginManager'
2
- import LinearGenomeViewPlugin from '@jbrowse/plugin-linear-genome-view'
3
- import SequencePlugin from '@jbrowse/plugin-sequence'
4
- import stateModelFactory from './model'
5
-
6
- test('creation', () => {
7
- const pluginManager = new PluginManager([
8
- new LinearGenomeViewPlugin(),
9
- new SequencePlugin(),
10
- ])
11
- .createPluggableElements()
12
- .configure()
13
- const model = stateModelFactory(pluginManager)
14
- model.create({
15
- // @ts-expect-error
16
- type: 'LinearSyntenyView',
17
- views: [
18
- {
19
- type: 'LinearGenomeView',
20
- displayedRegions: [
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- {
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- refName: 'Pp01',
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- start: 0,
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- reversed: false,
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- },
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