@jbrowse/plugin-linear-comparative-view 2.6.1 → 2.6.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LGVSyntenyDisplay/configSchemaF.d.ts +1 -3
- package/dist/LGVSyntenyDisplay/configSchemaF.js +0 -1
- package/dist/LGVSyntenyDisplay/index.js +0 -1
- package/dist/LGVSyntenyDisplay/model.d.ts +4 -2
- package/dist/LGVSyntenyDisplay/model.js +0 -1
- package/dist/LaunchLinearSyntenyView.js +0 -1
- package/dist/LinearComparativeDisplay/configSchemaF.js +0 -1
- package/dist/LinearComparativeDisplay/index.js +0 -1
- package/dist/LinearComparativeDisplay/stateModelFactory.js +0 -1
- package/dist/LinearComparativeView/components/Header.js +11 -2
- package/dist/LinearComparativeView/components/LinearComparativeView.js +0 -1
- package/dist/LinearComparativeView/components/Rubberband.js +11 -33
- package/dist/LinearComparativeView/components/VerticalGuide.d.ts +8 -0
- package/dist/LinearComparativeView/components/VerticalGuide.js +33 -0
- package/dist/LinearComparativeView/index.js +0 -1
- package/dist/LinearComparativeView/model.d.ts +9 -15
- package/dist/LinearComparativeView/model.js +0 -1
- package/dist/LinearReadVsRef/LinearReadVsRef.js +0 -1
- package/dist/LinearReadVsRef/index.js +0 -1
- package/dist/LinearSyntenyDisplay/afterAttach.js +0 -1
- package/dist/LinearSyntenyDisplay/components/Component.js +0 -1
- package/dist/LinearSyntenyDisplay/components/LinearSyntenyRendering.js +0 -1
- package/dist/LinearSyntenyDisplay/components/SyntenyTooltip.js +0 -1
- package/dist/LinearSyntenyDisplay/components/util.js +0 -1
- package/dist/LinearSyntenyDisplay/configSchemaF.js +0 -1
- package/dist/LinearSyntenyDisplay/drawSynteny.js +0 -1
- package/dist/LinearSyntenyDisplay/index.js +0 -1
- package/dist/LinearSyntenyDisplay/model.js +0 -1
- package/dist/LinearSyntenyView/components/ExportSvgDialog.js +0 -1
- package/dist/LinearSyntenyView/components/Icons.js +0 -1
- package/dist/LinearSyntenyView/components/ImportCustomTrack.js +0 -1
- package/dist/LinearSyntenyView/components/ImportForm.js +0 -1
- package/dist/LinearSyntenyView/components/ImportSyntenyTrackSelector.js +0 -1
- package/dist/LinearSyntenyView/components/LinearSyntenyView.js +0 -1
- package/dist/LinearSyntenyView/index.js +0 -1
- package/dist/LinearSyntenyView/model.d.ts +9 -9
- package/dist/LinearSyntenyView/model.js +0 -1
- package/dist/LinearSyntenyView/svgcomponents/SVGBackground.js +0 -1
- package/dist/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js +0 -1
- package/dist/SyntenyFeatureDetail/SyntenyFeatureDetail.js +0 -1
- package/dist/SyntenyFeatureDetail/index.js +0 -1
- package/dist/SyntenyTrack/configSchema.js +0 -1
- package/dist/SyntenyTrack/index.js +0 -1
- package/dist/index.js +0 -1
- package/dist/util.js +0 -1
- package/esm/LGVSyntenyDisplay/configSchemaF.d.ts +1 -3
- package/esm/LGVSyntenyDisplay/configSchemaF.js +0 -1
- package/esm/LGVSyntenyDisplay/index.js +0 -1
- package/esm/LGVSyntenyDisplay/model.d.ts +4 -2
- package/esm/LGVSyntenyDisplay/model.js +0 -1
- package/esm/LaunchLinearSyntenyView.js +0 -1
- package/esm/LinearComparativeDisplay/configSchemaF.js +0 -1
- package/esm/LinearComparativeDisplay/index.js +0 -1
- package/esm/LinearComparativeDisplay/stateModelFactory.js +0 -1
- package/esm/LinearComparativeView/components/Header.js +11 -2
- package/esm/LinearComparativeView/components/LinearComparativeView.js +0 -1
- package/esm/LinearComparativeView/components/Rubberband.js +8 -33
- package/esm/LinearComparativeView/components/VerticalGuide.d.ts +8 -0
- package/esm/LinearComparativeView/components/VerticalGuide.js +28 -0
- package/esm/LinearComparativeView/index.js +0 -1
- package/esm/LinearComparativeView/model.d.ts +9 -15
- package/esm/LinearComparativeView/model.js +0 -1
- package/esm/LinearReadVsRef/LinearReadVsRef.js +0 -1
- package/esm/LinearReadVsRef/index.js +0 -1
- package/esm/LinearSyntenyDisplay/afterAttach.js +0 -1
- package/esm/LinearSyntenyDisplay/components/Component.js +0 -1
- package/esm/LinearSyntenyDisplay/components/LinearSyntenyRendering.js +0 -1
- package/esm/LinearSyntenyDisplay/components/SyntenyTooltip.js +0 -1
- package/esm/LinearSyntenyDisplay/components/util.js +0 -1
- package/esm/LinearSyntenyDisplay/configSchemaF.js +0 -1
- package/esm/LinearSyntenyDisplay/drawSynteny.js +0 -1
- package/esm/LinearSyntenyDisplay/index.js +0 -1
- package/esm/LinearSyntenyDisplay/model.js +0 -1
- package/esm/LinearSyntenyView/components/ExportSvgDialog.js +0 -1
- package/esm/LinearSyntenyView/components/Icons.js +0 -1
- package/esm/LinearSyntenyView/components/ImportCustomTrack.js +0 -1
- package/esm/LinearSyntenyView/components/ImportForm.js +0 -1
- package/esm/LinearSyntenyView/components/ImportSyntenyTrackSelector.js +0 -1
- package/esm/LinearSyntenyView/components/LinearSyntenyView.js +0 -1
- package/esm/LinearSyntenyView/index.js +0 -1
- package/esm/LinearSyntenyView/model.d.ts +9 -9
- package/esm/LinearSyntenyView/model.js +0 -1
- package/esm/LinearSyntenyView/svgcomponents/SVGBackground.js +0 -1
- package/esm/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js +0 -1
- package/esm/SyntenyFeatureDetail/SyntenyFeatureDetail.js +0 -1
- package/esm/SyntenyFeatureDetail/index.js +0 -1
- package/esm/SyntenyTrack/configSchema.js +0 -1
- package/esm/SyntenyTrack/index.js +0 -1
- package/esm/index.js +0 -1
- package/esm/util.js +0 -1
- package/package.json +3 -4
- package/dist/LGVSyntenyDisplay/configSchemaF.js.map +0 -1
- package/dist/LGVSyntenyDisplay/index.js.map +0 -1
- package/dist/LGVSyntenyDisplay/model.js.map +0 -1
- package/dist/LaunchLinearSyntenyView.js.map +0 -1
- package/dist/LinearComparativeDisplay/configSchemaF.js.map +0 -1
- package/dist/LinearComparativeDisplay/index.js.map +0 -1
- package/dist/LinearComparativeDisplay/stateModelFactory.js.map +0 -1
- package/dist/LinearComparativeView/components/Header.js.map +0 -1
- package/dist/LinearComparativeView/components/LinearComparativeView.js.map +0 -1
- package/dist/LinearComparativeView/components/Rubberband.js.map +0 -1
- package/dist/LinearComparativeView/index.js.map +0 -1
- package/dist/LinearComparativeView/model.js.map +0 -1
- package/dist/LinearReadVsRef/LinearReadVsRef.js.map +0 -1
- package/dist/LinearReadVsRef/index.js.map +0 -1
- package/dist/LinearSyntenyDisplay/afterAttach.js.map +0 -1
- package/dist/LinearSyntenyDisplay/components/Component.js.map +0 -1
- package/dist/LinearSyntenyDisplay/components/LinearSyntenyRendering.js.map +0 -1
- package/dist/LinearSyntenyDisplay/components/SyntenyTooltip.js.map +0 -1
- package/dist/LinearSyntenyDisplay/components/util.js.map +0 -1
- package/dist/LinearSyntenyDisplay/configSchemaF.js.map +0 -1
- package/dist/LinearSyntenyDisplay/drawSynteny.js.map +0 -1
- package/dist/LinearSyntenyDisplay/index.js.map +0 -1
- package/dist/LinearSyntenyDisplay/model.js.map +0 -1
- package/dist/LinearSyntenyView/components/ExportSvgDialog.js.map +0 -1
- package/dist/LinearSyntenyView/components/Icons.js.map +0 -1
- package/dist/LinearSyntenyView/components/ImportCustomTrack.js.map +0 -1
- package/dist/LinearSyntenyView/components/ImportForm.js.map +0 -1
- package/dist/LinearSyntenyView/components/ImportSyntenyTrackSelector.js.map +0 -1
- package/dist/LinearSyntenyView/components/LinearSyntenyView.js.map +0 -1
- package/dist/LinearSyntenyView/index.js.map +0 -1
- package/dist/LinearSyntenyView/model.js.map +0 -1
- package/dist/LinearSyntenyView/svgcomponents/SVGBackground.js.map +0 -1
- package/dist/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js.map +0 -1
- package/dist/SyntenyFeatureDetail/SyntenyFeatureDetail.js.map +0 -1
- package/dist/SyntenyFeatureDetail/index.js.map +0 -1
- package/dist/SyntenyTrack/configSchema.js.map +0 -1
- package/dist/SyntenyTrack/index.js.map +0 -1
- package/dist/index.js.map +0 -1
- package/dist/util.js.map +0 -1
- package/esm/LGVSyntenyDisplay/configSchemaF.js.map +0 -1
- package/esm/LGVSyntenyDisplay/index.js.map +0 -1
- package/esm/LGVSyntenyDisplay/model.js.map +0 -1
- package/esm/LaunchLinearSyntenyView.js.map +0 -1
- package/esm/LinearComparativeDisplay/configSchemaF.js.map +0 -1
- package/esm/LinearComparativeDisplay/index.js.map +0 -1
- package/esm/LinearComparativeDisplay/stateModelFactory.js.map +0 -1
- package/esm/LinearComparativeView/components/Header.js.map +0 -1
- package/esm/LinearComparativeView/components/LinearComparativeView.js.map +0 -1
- package/esm/LinearComparativeView/components/Rubberband.js.map +0 -1
- package/esm/LinearComparativeView/index.js.map +0 -1
- package/esm/LinearComparativeView/model.js.map +0 -1
- package/esm/LinearReadVsRef/LinearReadVsRef.js.map +0 -1
- package/esm/LinearReadVsRef/index.js.map +0 -1
- package/esm/LinearSyntenyDisplay/afterAttach.js.map +0 -1
- package/esm/LinearSyntenyDisplay/components/Component.js.map +0 -1
- package/esm/LinearSyntenyDisplay/components/LinearSyntenyRendering.js.map +0 -1
- package/esm/LinearSyntenyDisplay/components/SyntenyTooltip.js.map +0 -1
- package/esm/LinearSyntenyDisplay/components/util.js.map +0 -1
- package/esm/LinearSyntenyDisplay/configSchemaF.js.map +0 -1
- package/esm/LinearSyntenyDisplay/drawSynteny.js.map +0 -1
- package/esm/LinearSyntenyDisplay/index.js.map +0 -1
- package/esm/LinearSyntenyDisplay/model.js.map +0 -1
- package/esm/LinearSyntenyView/components/ExportSvgDialog.js.map +0 -1
- package/esm/LinearSyntenyView/components/Icons.js.map +0 -1
- package/esm/LinearSyntenyView/components/ImportCustomTrack.js.map +0 -1
- package/esm/LinearSyntenyView/components/ImportForm.js.map +0 -1
- package/esm/LinearSyntenyView/components/ImportSyntenyTrackSelector.js.map +0 -1
- package/esm/LinearSyntenyView/components/LinearSyntenyView.js.map +0 -1
- package/esm/LinearSyntenyView/index.js.map +0 -1
- package/esm/LinearSyntenyView/model.js.map +0 -1
- package/esm/LinearSyntenyView/svgcomponents/SVGBackground.js.map +0 -1
- package/esm/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js.map +0 -1
- package/esm/SyntenyFeatureDetail/SyntenyFeatureDetail.js.map +0 -1
- package/esm/SyntenyFeatureDetail/index.js.map +0 -1
- package/esm/SyntenyTrack/configSchema.js.map +0 -1
- package/esm/SyntenyTrack/index.js.map +0 -1
- package/esm/index.js.map +0 -1
- package/esm/util.js.map +0 -1
- package/src/LGVSyntenyDisplay/configSchemaF.ts +0 -22
- package/src/LGVSyntenyDisplay/index.ts +0 -20
- package/src/LGVSyntenyDisplay/model.ts +0 -177
- package/src/LaunchLinearSyntenyView.ts +0 -86
- package/src/LinearComparativeDisplay/configSchemaF.ts +0 -22
- package/src/LinearComparativeDisplay/index.ts +0 -21
- package/src/LinearComparativeDisplay/stateModelFactory.ts +0 -212
- package/src/LinearComparativeView/components/Header.tsx +0 -103
- package/src/LinearComparativeView/components/LinearComparativeView.tsx +0 -152
- package/src/LinearComparativeView/components/Rubberband.tsx +0 -329
- package/src/LinearComparativeView/index.ts +0 -15
- package/src/LinearComparativeView/model.ts +0 -395
- package/src/LinearReadVsRef/LinearReadVsRef.tsx +0 -360
- package/src/LinearReadVsRef/index.ts +0 -58
- package/src/LinearSyntenyDisplay/afterAttach.ts +0 -149
- package/src/LinearSyntenyDisplay/components/Component.tsx +0 -75
- package/src/LinearSyntenyDisplay/components/LinearSyntenyRendering.tsx +0 -200
- package/src/LinearSyntenyDisplay/components/SyntenyTooltip.tsx +0 -82
- package/src/LinearSyntenyDisplay/components/util.ts +0 -142
- package/src/LinearSyntenyDisplay/configSchemaF.ts +0 -38
- package/src/LinearSyntenyDisplay/drawSynteny.ts +0 -266
- package/src/LinearSyntenyDisplay/index.ts +0 -21
- package/src/LinearSyntenyDisplay/model.ts +0 -187
- package/src/LinearSyntenyView/components/ExportSvgDialog.tsx +0 -148
- package/src/LinearSyntenyView/components/Icons.tsx +0 -24
- package/src/LinearSyntenyView/components/ImportCustomTrack.tsx +0 -262
- package/src/LinearSyntenyView/components/ImportForm.tsx +0 -221
- package/src/LinearSyntenyView/components/ImportSyntenyTrackSelector.tsx +0 -82
- package/src/LinearSyntenyView/components/LinearSyntenyView.tsx +0 -20
- package/src/LinearSyntenyView/index.ts +0 -15
- package/src/LinearSyntenyView/model.test.ts +0 -1605
- package/src/LinearSyntenyView/model.ts +0 -169
- package/src/LinearSyntenyView/svgcomponents/SVGBackground.tsx +0 -21
- package/src/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.tsx +0 -176
- package/src/SyntenyFeatureDetail/SyntenyFeatureDetail.tsx +0 -64
- package/src/SyntenyFeatureDetail/index.ts +0 -36
- package/src/SyntenyTrack/configSchema.ts +0 -23
- package/src/SyntenyTrack/index.tsx +0 -15
- package/src/index.tsx +0 -42
- package/src/util.ts +0 -124
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@@ -219,7 +219,7 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: Feature | undefined;
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} & {
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readonly blockType: "
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readonly blockType: "dynamicBlocks" | "staticBlocks";
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
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} & {
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readonly renderDelay: number;
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@@ -250,7 +250,9 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
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afterAttach(): void;
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} & {
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colorTagMap: import("mobx").ObservableMap<string, string>;
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modificationTagMap: import("mobx").ObservableMap<string, string>;
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modificationTagMap: import("mobx").ObservableMap<string, string>; /**
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* #property
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*/
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featureUnderMouseVolatile: Feature | undefined;
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currSortBpPerPx: number;
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modificationsReady: boolean;
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@@ -7,6 +7,7 @@ import { Menu } from '@jbrowse/core/ui';
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// icons
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import MoreVertIcon from '@mui/icons-material/MoreVert';
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import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons';
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import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
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const useStyles = makeStyles()(() => ({
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headerBar: {
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gridArea: '1/1/auto/span 2',
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}));
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return (React.createElement(
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return (React.createElement(CascadingMenuButton, { menuItems: [
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{
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label: 'Synteny track selector',
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onClick: () => model.activateTrackSelector(),
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},
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...model.views.map((view, idx) => ({
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label: `View ${idx + 1} track selector`,
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onClick: () => view.activateTrackSelector(),
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})),
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] },
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React.createElement(TrackSelectorIcon, null)));
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});
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const Header = observer(function ({ model }) {
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}, menuItems: model.headerMenuItems(), onClose: () => setMenuAnchorEl(undefined) })) : null));
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});
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export default Header;
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//# sourceMappingURL=Header.js.map
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const middle = model.tracks.some(({ displays }) => displays.some((d) => getConf(d, 'middle')));
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return middle ? (React.createElement(MiddleComparativeView, { ...props })) : (React.createElement(OverlayComparativeView, { ...props }));
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});
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//# sourceMappingURL=LinearComparativeView.js.map
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import React, { useRef, useEffect, useState } from 'react';
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import { observer } from 'mobx-react';
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.map(view => view.pxToBp(coordX))
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const numOfBpSelected = views.map(view => Math.ceil(width * view.bpPerPx));
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}, open: true, anchorEl: rubberbandRef.current, anchorOrigin: {
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type LCV = LinearComparativeViewModel;
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.map(view => view.pxToBp(coordX))
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.map((elt, idx) => (React.createElement(Typography, { className: classes.sm, key: [JSON.stringify(elt), idx].join('-') }, stringify(elt, true)))), arrow: true },
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} })));
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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* #getter
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
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hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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* #getter
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*/
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hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
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@@ -72,9 +71,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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leftOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
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rightOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
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* #action
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*/
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rightOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
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} & {
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readonly width: number;
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readonly interRegionPaddingWidth: number;
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@@ -89,9 +86,6 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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readonly scaleBarHeight: number;
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readonly headerHeight: number;
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readonly trackHeights: number;
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/**
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* #action
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*/
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readonly trackHeightsWithResizeHandles: number;
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readonly height: number;
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readonly totalBp: number;
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@@ -120,12 +114,12 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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toggleNoTracksActive(): void;
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toggleShowGridlines(): void;
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scrollTo(offsetPx: number): number;
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zoomTo(bpPerPx: number, offset?: number
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zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
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setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
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setNewView(bpPerPx: number, offsetPx: number): void;
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horizontallyFlip(): void;
|
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|
-
showTrack(trackId: string, initialSnapshot?: {}
|
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+
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
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hideTrack(trackId: string): number;
|
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} & {
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moveTrack(movingId: string, targetId: string): void;
|
|
@@ -156,7 +150,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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setDraggingTrackId(idx?: string | undefined): void;
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setScaleFactor(factor: number): void;
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clearView(): void;
|
|
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|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions
|
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|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions): Promise<void>;
|
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} & {
|
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161
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slide: (viewWidths: number) => void;
|
|
162
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} & {
|
|
@@ -255,4 +255,3 @@ export default function ReadVsRefDialog({ track, feature: preFeature, handleClos
|
|
|
255
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|
React.createElement(Button, { variant: "contained", color: "secondary", onClick: handleClose }, "Cancel"),
|
|
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|
React.createElement(Button, { disabled: !primaryFeature, variant: "contained", color: "primary", onClick: onSubmit }, "Submit"))));
|
|
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|
}
|
|
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|
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//# sourceMappingURL=LinearReadVsRef.js.map
|
|
@@ -129,4 +129,3 @@ export default observer(function LinearSyntenyRendering({ model, }) {
|
|
|
129
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|
}, width: width, height: height }),
|
|
130
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|
model.mouseoverId && tooltip && currX && currY ? (React.createElement(SyntenyTooltip, { x: currX, y: currY, title: tooltip })) : null));
|
|
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|
});
|
|
132
|
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//# sourceMappingURL=LinearSyntenyRendering.js.map
|
|
@@ -149,4 +149,3 @@ const OpenTrack = observer(({ sessionTrackData, assembly1, assembly2, setSession
|
|
|
149
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|
React.createElement(FileSelector, { name: "genome 2 .bed (right column of anchors file)", description: "", location: bed2Location, setLocation: loc => setBed2Location(loc) }))))) : (React.createElement(FileSelector, { name: value ? value + ' location' : '', description: "", location: fileLocation, setLocation: loc => setFileLocation(loc) }))))));
|
|
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|
});
|
|
151
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|
export default OpenTrack;
|
|
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|
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//# sourceMappingURL=ImportCustomTrack.js.map
|
|
@@ -96,4 +96,3 @@ export default observer(function ({ model, }) {
|
|
|
96
96
|
React.createElement(Button, { onClick: onOpenClick, variant: "contained", color: "primary" }, "Launch"))))),
|
|
97
97
|
React.createElement(TrackSelector, { setShowTrackId: setShowTrackId, assembly2: assembly2, assembly1: assembly1, setSessionTrackData: setSessionTrackData, sessionTrackData: sessionTrackData, model: model })))));
|
|
98
98
|
});
|
|
99
|
-
//# sourceMappingURL=ImportForm.js.map
|
|
@@ -35,4 +35,3 @@ const Selector = observer(({ model, assembly1, assembly2, setShowTrackId, }) =>
|
|
|
35
35
|
filteredTracks.length ? (React.createElement(Select, { value: value, onChange: event => setValue(event.target.value) }, filteredTracks.map(track => (React.createElement(MenuItem, { key: track.trackId, value: track.trackId }, getTrackName(track, session)))))) : (React.createElement(ErrorMessage, { error: `No synteny tracks found for ${assembly1},${assembly2}` }))));
|
|
36
36
|
});
|
|
37
37
|
export default Selector;
|
|
38
|
-
//# sourceMappingURL=ImportSyntenyTrackSelector.js.map
|
|
@@ -7,4 +7,3 @@ const LinearSyntenyView = observer(({ model }) => {
|
|
|
7
7
|
return !model.initialized ? (React.createElement(ImportForm, { model: model })) : (React.createElement(LinearComparativeViewComponent, { model: model }));
|
|
8
8
|
});
|
|
9
9
|
export default LinearSyntenyView;
|
|
10
|
-
//# sourceMappingURL=LinearSyntenyView.js.map
|
|
@@ -125,12 +125,12 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
125
125
|
toggleNoTracksActive(): void;
|
|
126
126
|
toggleShowGridlines(): void;
|
|
127
127
|
scrollTo(offsetPx: number): number;
|
|
128
|
-
zoomTo(bpPerPx: number, offset?: number
|
|
128
|
+
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
129
129
|
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
|
|
130
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|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
|
|
131
131
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
132
132
|
horizontallyFlip(): void;
|
|
133
|
-
showTrack(trackId: string, initialSnapshot?: {}
|
|
133
|
+
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
|
|
134
134
|
hideTrack(trackId: string): number;
|
|
135
135
|
} & {
|
|
136
136
|
moveTrack(movingId: string, targetId: string): void;
|
|
@@ -161,7 +161,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
161
161
|
setDraggingTrackId(idx?: string | undefined): void;
|
|
162
162
|
setScaleFactor(factor: number): void;
|
|
163
163
|
clearView(): void;
|
|
164
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions
|
|
164
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions): Promise<void>;
|
|
165
165
|
} & {
|
|
166
166
|
slide: (viewWidths: number) => void;
|
|
167
167
|
} & {
|
|
@@ -375,12 +375,12 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
375
375
|
toggleNoTracksActive(): void;
|
|
376
376
|
toggleShowGridlines(): void;
|
|
377
377
|
scrollTo(offsetPx: number): number;
|
|
378
|
-
zoomTo(bpPerPx: number, offset?: number
|
|
378
|
+
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
379
379
|
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
|
|
380
380
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
|
|
381
381
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
382
382
|
horizontallyFlip(): void;
|
|
383
|
-
showTrack(trackId: string, initialSnapshot?: {}
|
|
383
|
+
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
|
|
384
384
|
hideTrack(trackId: string): number;
|
|
385
385
|
} & {
|
|
386
386
|
moveTrack(movingId: string, targetId: string): void;
|
|
@@ -411,7 +411,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
411
411
|
setDraggingTrackId(idx?: string | undefined): void;
|
|
412
412
|
setScaleFactor(factor: number): void;
|
|
413
413
|
clearView(): void;
|
|
414
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions
|
|
414
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions): Promise<void>;
|
|
415
415
|
} & {
|
|
416
416
|
slide: (viewWidths: number) => void;
|
|
417
417
|
} & {
|
|
@@ -563,12 +563,12 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
563
563
|
toggleNoTracksActive(): void;
|
|
564
564
|
toggleShowGridlines(): void;
|
|
565
565
|
scrollTo(offsetPx: number): number;
|
|
566
|
-
zoomTo(bpPerPx: number, offset?: number
|
|
566
|
+
zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
|
|
567
567
|
setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
|
|
568
568
|
setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
|
|
569
569
|
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
570
570
|
horizontallyFlip(): void;
|
|
571
|
-
showTrack(trackId: string, initialSnapshot?: {}
|
|
571
|
+
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
|
|
572
572
|
hideTrack(trackId: string): number;
|
|
573
573
|
} & {
|
|
574
574
|
moveTrack(movingId: string, targetId: string): void;
|
|
@@ -599,7 +599,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
599
599
|
setDraggingTrackId(idx?: string | undefined): void;
|
|
600
600
|
setScaleFactor(factor: number): void;
|
|
601
601
|
clearView(): void;
|
|
602
|
-
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions
|
|
602
|
+
exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions): Promise<void>;
|
|
603
603
|
} & {
|
|
604
604
|
slide: (viewWidths: number) => void;
|
|
605
605
|
} & {
|
|
@@ -75,4 +75,3 @@ export async function renderToSvg(model, opts) {
|
|
|
75
75
|
React.createElement(SVGRuler, { model: displayResults[1].view, fontSize: fontSize })),
|
|
76
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React.createElement(SVGTracks, { textHeight: textHeight, trackLabels: trackLabels, fontSize: fontSize, model: displayResults[1].view, displayResults: displayResults[1].data, offset: offset, trackLabelOffset: trackLabelOffset }))))));
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//# sourceMappingURL=SVGLinearSyntenyView.js.map
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package/esm/index.js
CHANGED
package/esm/util.js
CHANGED
package/package.json
CHANGED
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{
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2
|
"name": "@jbrowse/plugin-linear-comparative-view",
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-
"version": "2.6.
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+
"version": "2.6.2",
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4
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"description": "JBrowse 2 linear comparative view",
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5
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"keywords": [
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"jbrowse",
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"main": "dist/index.js",
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"files": [
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"dist",
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-
"src",
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"esm"
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],
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"scripts": {
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"useSrc": "node ../../scripts/useSrc.js",
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"prebuild": "npm run clean",
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"build:esm": "tsc --build tsconfig.build.esm.json",
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-
"build:
|
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+
"build:commonjs": "tsc --build tsconfig.build.commonjs.json",
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|
"clean": "rimraf dist esm *.tsbuildinfo"
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38
37
|
},
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|
"dependencies": {
|
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@@ -63,5 +62,5 @@
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|
"publishConfig": {
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|
64
63
|
"access": "public"
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},
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"gitHead": "
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|
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"gitHead": "bbea587a402d9974acdd804a33f4b77f31a2fd5f"
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|
}
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-
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|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LGVSyntenyDisplay/index.ts"],"names":[],"mappings":";;;;;AACA,kGAAyE;AACzE,oEAA2C;AAC3C,oDAAiC;AACjC,kFAA+E;AAE/E,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,uBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,MAAM,UAAU,GAAG,IAAA,eAAW,EAAC,YAAY,CAAC,CAAA;QAC5C,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,mBAAmB;YACzB,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,cAAc;YACzB,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,sDAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
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|
@@ -1 +0,0 @@
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|
1
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-
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|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
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|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
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|
|
@@ -1 +0,0 @@
|
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|
1
|
-
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