@jbrowse/plugin-linear-comparative-view 2.18.0 → 3.0.1

package/esm/SyntenyFeatureDetail/SyntenyFeatureDetail.js

@@ -1,63 +1,10 @@
-import React, { lazy } from 'react';
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 import BaseFeatureDetail from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
 import BaseCard from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard';
-import { SimpleFeature, assembleLocString, getSession, } from '@jbrowse/core/util';
-import { Link, Paper } from '@mui/material';
+import { Paper } from '@mui/material';
 import { observer } from 'mobx-react';
-const LaunchSyntenyViewDialog = lazy(() => import('../LGVSyntenyDisplay/components/LaunchSyntenyViewDialog'));
-const CustomLinker = observer(function ({ model, }) {
-    const { featureData, view, level, trackId } = model;
-    return (React.createElement("ul", null,
-        view.type === 'LinearSyntenyView' ? (React.createElement("li", null,
-            React.createElement(Link, { href: "#", onClick: event => {
-                    var _a, _b;
-                    event.preventDefault();
-                    const { views } = view;
-                    if (level !== undefined) {
-                        (_a = views[level]) === null || _a === void 0 ? void 0 : _a.navTo(featureData);
-                        (_b = views[level + 1]) === null || _b === void 0 ? void 0 : _b.navTo(featureData.mate);
-                    }
-                    else {
-                        const f1 = featureData;
-                        const f2 = featureData.mate;
-                        const r1 = f1.assemblyName;
-                        const r2 = f2.assemblyName;
-                        const v1 = views.find(view => view.assemblyNames[0] === r1);
-                        const v2 = views.find(view => view.assemblyNames[0] === r2);
-                        if (!v1 || !v2) {
-                            getSession(model).notify([
-                                v1
-                                    ? `Unable to find ${assembleLocString(f1)} in synteny view`
-                                    : '',
-                                v2
-                                    ? `Unable to find ${assembleLocString(f2)} in synteny view`
-                                    : '',
-                            ].join(' ... '));
-                        }
-                        v1 === null || v1 === void 0 ? void 0 : v1.navTo(f1);
-                        v2 === null || v2 === void 0 ? void 0 : v2.navTo(f2);
-                    }
-                } }, "Center view on this feature"))) : null,
-        React.createElement("li", null,
-            React.createElement(Link, { href: "#", onClick: event => {
-                    event.preventDefault();
-                    const session = getSession(model);
-                    const feature = new SimpleFeature(featureData);
-                    session.queueDialog(handleClose => [
-                        LaunchSyntenyViewDialog,
-                        {
-                            model,
-                            feature,
-                            trackId,
-                            handleClose,
-                        },
-                    ]);
-                } }, "Launch new linear synteny view on this feature"))));
-});
+import LinkToSyntenyView from './LinkToSyntenyView';
 const SyntenyFeatureDetail = observer(function ({ model, }) {
-    return (React.createElement(Paper, null,
-        React.createElement(BaseFeatureDetail, { title: "Feature", model: model }),
-        React.createElement(BaseCard, { title: "Link to view" },
-            React.createElement(CustomLinker, { model: model }))));
+    return (_jsxs(Paper, { children: [_jsx(BaseFeatureDetail, { title: "Feature", model: model }), _jsx(BaseCard, { title: "Link to view", children: _jsx(LinkToSyntenyView, { model: model }) })] }));
 });
 export default SyntenyFeatureDetail;

package/esm/SyntenyFeatureDetail/types.d.ts

@@ -0,0 +1,9 @@
+import type { SimpleFeatureSerialized } from '@jbrowse/core/util';
+export interface SyntenyFeatureDetailModel {
+    trackId: string;
+    featureData: SimpleFeatureSerialized;
+    level?: number;
+    view: {
+        type: string;
+    };
+}

package/esm/SyntenyFeatureDetail/types.js

@@ -0,0 +1 @@
+export {};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-comparative-view",
-  "version": "2.18.0",
+  "version": "3.0.1",
   "description": "JBrowse 2 linear comparative view",
   "keywords": [
     "jbrowse",
@@ -36,28 +36,28 @@
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
+    "@jbrowse/core": "^3.0.1",
+    "@jbrowse/plugin-alignments": "^3.0.1",
+    "@jbrowse/plugin-linear-genome-view": "^3.0.1",
     "@mui/icons-material": "^6.0.0",
-    "copy-to-clipboard": "^3.3.1",
-    "file-saver": "^2.0.0"
-  },
-  "peerDependencies": {
-    "@jbrowse/core": "^2.0.0",
-    "@jbrowse/plugin-alignments": "^2.0.0",
-    "@jbrowse/plugin-linear-genome-view": "^2.0.0",
     "@mui/material": "^6.0.0",
+    "copy-to-clipboard": "^3.3.1",
+    "file-saver": "^2.0.0",
     "mobx": "^6.0.0",
     "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.0.0",
-    "react": ">=16.8.0",
-    "react-dom": ">=16.8.0",
     "rxjs": "^7.0.0",
     "tss-react": "^4.0.0"
   },
+  "peerDependencies": {
+    "react": ">=18.0.0",
+    "react-dom": ">=18.0.0"
+  },
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "c344ea60099cb7e460b77f15808946b24a7eee74"
+  "gitHead": "aa2f1d1a89d2361c7fd1a93fe29506fa4554f5cc"
 }

package/dist/LinearSyntenyView/components/ImportForm/AddCustomTrack.d.ts

@@ -1,10 +0,0 @@
-import React from 'react';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { SnapshotIn } from 'mobx-state-tree';
-type Conf = SnapshotIn<AnyConfigurationModel>;
-declare const ImportCustomTrack: ({ assembly1, assembly2, setUserOpenedSyntenyTrack, }: {
-    assembly1: string;
-    assembly2: string;
-    setUserOpenedSyntenyTrack: (arg: Conf) => void;
-}) => React.JSX.Element;
-export default ImportCustomTrack;

package/dist/LinearSyntenyView/components/ImportForm/AddCustomTrack.js

@@ -1,194 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const util_1 = require("./util");
-function getAdapter({ radioOption, assembly1, assembly2, fileLocation, indexFileLocation, bed1Location, bed2Location, }) {
-    if (radioOption === '.paf') {
-        return {
-            type: 'PAFAdapter',
-            pafLocation: fileLocation,
-            queryAssembly: assembly1,
-            targetAssembly: assembly2,
-        };
-    }
-    else if (radioOption === '.out') {
-        return {
-            type: 'MashMapAdapter',
-            outLocation: fileLocation,
-            queryAssembly: assembly1,
-            targetAssembly: assembly2,
-        };
-    }
-    else if (radioOption === '.delta') {
-        return {
-            type: 'DeltaAdapter',
-            deltaLocation: fileLocation,
-            queryAssembly: assembly1,
-            targetAssembly: assembly2,
-        };
-    }
-    else if (radioOption === '.chain') {
-        return {
-            type: 'ChainAdapter',
-            chainLocation: fileLocation,
-            queryAssembly: assembly1,
-            targetAssembly: assembly2,
-        };
-    }
-    else if (radioOption === '.anchors') {
-        return {
-            type: 'MCScanAnchorsAdapter',
-            mcscanAnchorsLocation: fileLocation,
-            bed1Location,
-            bed2Location,
-            assemblyNames: [assembly1, assembly2],
-        };
-    }
-    else if (radioOption === '.anchors.simple') {
-        return {
-            type: 'MCScanSimpleAnchorsAdapter',
-            mcscanSimpleAnchorsLocation: fileLocation,
-            bed1Location,
-            bed2Location,
-            assemblyNames: [assembly1, assembly2],
-        };
-    }
-    else if (radioOption === '.pif.gz') {
-        return {
-            type: 'PairwiseIndexedPAFAdapter',
-            pifGzLocation: fileLocation,
-            index: { location: indexFileLocation },
-            assemblyNames: [assembly1, assembly2],
-        };
-    }
-    else {
-        throw new Error(`Unknown to detect type ${radioOption} from filename (select radio button to clarify)`);
-    }
-}
-const ImportCustomTrack = (0, mobx_react_1.observer)(function ({ assembly1, assembly2, setUserOpenedSyntenyTrack, }) {
-    const [bed2Location, setBed2Location] = (0, react_1.useState)();
-    const [bed1Location, setBed1Location] = (0, react_1.useState)();
-    const [fileLocation, setFileLocation] = (0, react_1.useState)();
-    const [indexFileLocation, setIndexFileLocation] = (0, react_1.useState)();
-    const [value, setValue] = (0, react_1.useState)('');
-    const [error, setError] = (0, react_1.useState)();
-    const fileName = (0, util_1.getName)(fileLocation);
-    const radioOption = value || (fileName ? (0, util_1.extName)((0, util_1.stripGz)(fileName)) : '');
-    (0, react_1.useEffect)(() => {
-        try {
-            if (fileLocation) {
-                const fn = fileName ? (0, util_1.basename)(fileName) : 'MyTrack';
-                const trackId = `${fn}-${Date.now()}`;
-                setError(undefined);
-                setUserOpenedSyntenyTrack({
-                    trackId,
-                    name: fn,
-                    assemblyNames: [assembly2, assembly1],
-                    type: 'SyntenyTrack',
-                    adapter: getAdapter({
-                        radioOption,
-                        assembly1,
-                        assembly2,
-                        fileLocation,
-                        indexFileLocation,
-                        bed1Location,
-                        bed2Location,
-                    }),
-                });
-            }
-        }
-        catch (e) {
-            console.error(e);
-            setError(e);
-        }
-    }, [
-        fileName,
-        assembly1,
-        assembly2,
-        bed1Location,
-        bed2Location,
-        fileLocation,
-        indexFileLocation,
-        radioOption,
-        setUserOpenedSyntenyTrack,
-    ]);
-    return (react_1.default.createElement(material_1.Paper, { style: { padding: 12 } },
-        error ? react_1.default.createElement(ui_1.ErrorMessage, { error: error }) : null,
-        react_1.default.createElement(material_1.Typography, { style: { textAlign: 'center' } }, "Add a .paf, .out (MashMap), .delta (Mummer), .chain, .anchors or .anchors.simple (MCScan) file to view. These file types can also be gzipped. The first assembly should be the query sequence (e.g. left column of the PAF) and the second assembly should be the target sequence (e.g. right column of the PAF)"),
-        react_1.default.createElement(material_1.RadioGroup, { value: radioOption, onChange: event => {
-                setValue(event.target.value);
-            } },
-            react_1.default.createElement(material_1.Grid, { container: true, justifyContent: "center" },
-                react_1.default.createElement(material_1.Grid, { item: true },
-                    react_1.default.createElement(material_1.FormControlLabel, { value: ".paf", control: react_1.default.createElement(material_1.Radio, null), label: ".paf" })),
-                react_1.default.createElement(material_1.Grid, { item: true },
-                    react_1.default.createElement(material_1.FormControlLabel, { value: ".out", control: react_1.default.createElement(material_1.Radio, null), label: ".out" })),
-                react_1.default.createElement(material_1.Grid, { item: true },
-                    react_1.default.createElement(material_1.FormControlLabel, { value: ".delta", control: react_1.default.createElement(material_1.Radio, null), label: ".delta" })),
-                react_1.default.createElement(material_1.Grid, { item: true },
-                    react_1.default.createElement(material_1.FormControlLabel, { value: ".chain", control: react_1.default.createElement(material_1.Radio, null), label: ".chain" })),
-                react_1.default.createElement(material_1.Grid, { item: true },
-                    react_1.default.createElement(material_1.FormControlLabel, { value: ".anchors", control: react_1.default.createElement(material_1.Radio, null), label: ".anchors" })),
-                react_1.default.createElement(material_1.Grid, { item: true },
-                    react_1.default.createElement(material_1.FormControlLabel, { value: ".anchors.simple", control: react_1.default.createElement(material_1.Radio, null), label: ".anchors.simple" })),
-                react_1.default.createElement(material_1.Grid, { item: true },
-                    react_1.default.createElement(material_1.FormControlLabel, { value: ".pif.gz", control: react_1.default.createElement(material_1.Radio, null), label: ".pif.gz" })))),
-        react_1.default.createElement(material_1.Grid, { container: true, justifyContent: "center" },
-            react_1.default.createElement(material_1.Grid, { item: true }, value === '.anchors' || value === '.anchors.simple' ? (react_1.default.createElement("div", null,
-                react_1.default.createElement("div", { style: { margin: 20 } },
-                    "Open the ",
-                    value,
-                    " and .bed files for both genome assemblies from the MCScan (Python version) pipeline",
-                    ' ',
-                    react_1.default.createElement("a", { href: "https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)" }, "(more info)")),
-                react_1.default.createElement("div", { style: { display: 'flex' } },
-                    react_1.default.createElement("div", null,
-                        react_1.default.createElement(ui_1.FileSelector, { name: ".anchors file", description: "", location: fileLocation, setLocation: loc => {
-                                setFileLocation(loc);
-                            } })),
-                    react_1.default.createElement("div", null,
-                        react_1.default.createElement(ui_1.FileSelector, { name: "genome 1 .bed (left column of anchors file)", description: "", location: bed1Location, setLocation: loc => {
-                                setBed1Location(loc);
-                            } })),
-                    react_1.default.createElement("div", null,
-                        react_1.default.createElement(ui_1.FileSelector, { name: "genome 2 .bed (right column of anchors file)", description: "", location: bed2Location, setLocation: loc => {
-                                setBed2Location(loc);
-                            } }))))) : value === '.pif.gz' ? (react_1.default.createElement("div", { style: { display: 'flex' } },
-                react_1.default.createElement("div", null,
-                    react_1.default.createElement(ui_1.FileSelector, { name: `${value} location`, description: "", location: fileLocation, setLocation: loc => {
-                            setFileLocation(loc);
-                        } })),
-                react_1.default.createElement("div", null,
-                    react_1.default.createElement(ui_1.FileSelector, { name: `${value} index location`, description: "", location: indexFileLocation, setLocation: loc => {
-                            setIndexFileLocation(loc);
-                        } })))) : (react_1.default.createElement(ui_1.FileSelector, { name: value ? `${value} location` : '', description: "", location: fileLocation, setLocation: loc => {
-                    setFileLocation(loc);
-                } }))))));
-});
-exports.default = ImportCustomTrack;

package/dist/LinearSyntenyView/components/ImportForm/Spacer.d.ts

@@ -1,2 +0,0 @@
-import React from 'react';
-export default function Spacer(): React.JSX.Element;

package/dist/LinearSyntenyView/components/ImportForm/Spacer.js

@@ -1,10 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = Spacer;
-const react_1 = __importDefault(require("react"));
-function Spacer() {
-    return react_1.default.createElement("div", { style: { flexGrow: 1 } });
-}

package/dist/LinearSyntenyView/components/ImportForm/TrackSelector.d.ts

@@ -1,10 +0,0 @@
-import React from 'react';
-import type { LinearSyntenyViewModel } from '../../model';
-declare const ImportSyntenyTrackSelector: ({ model, assembly1, assembly2, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack, }: {
-    model: LinearSyntenyViewModel;
-    assembly1: string;
-    assembly2: string;
-    preConfiguredSyntenyTrack: string | undefined;
-    setPreConfiguredSyntenyTrack: (arg: string) => void;
-}) => React.JSX.Element;
-export default ImportSyntenyTrackSelector;

package/dist/LinearSyntenyView/components/ImportForm/TrackSelector.js

@@ -1,57 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const configuration_1 = require("@jbrowse/core/configuration");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const ImportSyntenyTrackSelector = (0, mobx_react_1.observer)(function ({ model, assembly1, assembly2, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack, }) {
-    var _a;
-    const session = (0, util_1.getSession)(model);
-    const { tracks = [], sessionTracks = [] } = session;
-    const allTracks = [...tracks, ...sessionTracks];
-    const filteredTracks = allTracks.filter(track => {
-        const assemblyNames = (0, configuration_1.readConfObject)(track, 'assemblyNames');
-        return (assemblyNames.includes(assembly1) &&
-            assemblyNames.includes(assembly2) &&
-            track.type.includes('Synteny'));
-    });
-    const resetTrack = ((_a = filteredTracks[0]) === null || _a === void 0 ? void 0 : _a.trackId) || '';
-    const [value, setValue] = (0, react_1.useState)(resetTrack);
-    (0, react_1.useEffect)(() => {
-        if (value !== preConfiguredSyntenyTrack) {
-            setPreConfiguredSyntenyTrack(value);
-        }
-    }, [value, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack]);
-    return (react_1.default.createElement(material_1.Paper, { style: { padding: 12 } },
-        react_1.default.createElement(material_1.Typography, null, "Select a track from the select box below, the track will be shown when you hit \"Launch\"."),
-        filteredTracks.length ? (react_1.default.createElement(material_1.Select, { value: value, onChange: event => {
-                setValue(event.target.value);
-            } }, filteredTracks.map(track => (react_1.default.createElement(material_1.MenuItem, { key: track.trackId, value: track.trackId }, (0, tracks_1.getTrackName)(track, session)))))) : (react_1.default.createElement(ui_1.ErrorMessage, { error: `No synteny tracks found for ${assembly1},${assembly2}` }))));
-});
-exports.default = ImportSyntenyTrackSelector;

package/dist/LinearSyntenyView/components/ImportForm/TrackSelectorUtil.d.ts

@@ -1,14 +0,0 @@
-import React from 'react';
-import type { LinearSyntenyViewModel } from '../../model';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { SnapshotIn } from 'mobx-state-tree';
-type Conf = SnapshotIn<AnyConfigurationModel>;
-export default function TrackSelector({ model, assembly1, assembly2, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack, setUserOpenedSyntenyTrack, }: {
-    model: LinearSyntenyViewModel;
-    assembly1: string;
-    assembly2: string;
-    preConfiguredSyntenyTrack: string | undefined;
-    setUserOpenedSyntenyTrack: (arg: Conf) => void;
-    setPreConfiguredSyntenyTrack: (arg?: string) => void;
-}): React.JSX.Element;
-export {};

package/dist/LinearSyntenyView/components/ImportForm/TrackSelectorUtil.js

@@ -1,52 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = TrackSelector;
-const react_1 = __importStar(require("react"));
-const material_1 = require("@mui/material");
-const AddCustomTrack_1 = __importDefault(require("./AddCustomTrack"));
-const TrackSelector_1 = __importDefault(require("./TrackSelector"));
-function TrackSelector({ model, assembly1, assembly2, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack, setUserOpenedSyntenyTrack, }) {
-    const [choice, setChoice] = (0, react_1.useState)('tracklist');
-    (0, react_1.useEffect)(() => {
-        if (choice === 'none') {
-            setPreConfiguredSyntenyTrack(undefined);
-            setUserOpenedSyntenyTrack(undefined);
-        }
-    }, [choice, setPreConfiguredSyntenyTrack, setUserOpenedSyntenyTrack]);
-    return (react_1.default.createElement("div", null,
-        react_1.default.createElement(material_1.FormControl, null,
-            react_1.default.createElement(material_1.RadioGroup, { row: true, value: choice, onChange: event => {
-                    setChoice(event.target.value);
-                }, "aria-labelledby": "group-label" },
-                react_1.default.createElement(material_1.FormControlLabel, { value: "none", control: react_1.default.createElement(material_1.Radio, null), label: "None" }),
-                react_1.default.createElement(material_1.FormControlLabel, { value: "tracklist", control: react_1.default.createElement(material_1.Radio, null), label: "Existing track" }),
-                react_1.default.createElement(material_1.FormControlLabel, { value: "custom", control: react_1.default.createElement(material_1.Radio, null), label: "New track" }))),
-        choice === 'custom' ? (react_1.default.createElement(AddCustomTrack_1.default, { setUserOpenedSyntenyTrack: setUserOpenedSyntenyTrack, assembly2: assembly2, assembly1: assembly1 })) : null,
-        choice === 'tracklist' ? (react_1.default.createElement(TrackSelector_1.default, { key: `${assembly1}-${assembly2}`, model: model, assembly1: assembly1, assembly2: assembly2, preConfiguredSyntenyTrack: preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack: setPreConfiguredSyntenyTrack })) : null));
-}

package/esm/LinearSyntenyView/components/ImportForm/AddCustomTrack.d.ts

@@ -1,10 +0,0 @@
-import React from 'react';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { SnapshotIn } from 'mobx-state-tree';
-type Conf = SnapshotIn<AnyConfigurationModel>;
-declare const ImportCustomTrack: ({ assembly1, assembly2, setUserOpenedSyntenyTrack, }: {
-    assembly1: string;
-    assembly2: string;
-    setUserOpenedSyntenyTrack: (arg: Conf) => void;
-}) => React.JSX.Element;
-export default ImportCustomTrack;