@jbrowse/plugin-linear-comparative-view 2.18.0 → 3.0.0

package/esm/LinearSyntenyView/components/ImportForm/TrackSelector.d.ts

@@ -1,10 +0,0 @@
-import React from 'react';
-import type { LinearSyntenyViewModel } from '../../model';
-declare const ImportSyntenyTrackSelector: ({ model, assembly1, assembly2, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack, }: {
-    model: LinearSyntenyViewModel;
-    assembly1: string;
-    assembly2: string;
-    preConfiguredSyntenyTrack: string | undefined;
-    setPreConfiguredSyntenyTrack: (arg: string) => void;
-}) => React.JSX.Element;
-export default ImportSyntenyTrackSelector;

package/esm/LinearSyntenyView/components/ImportForm/TrackSelector.js

@@ -1,32 +0,0 @@
-import React, { useEffect, useState } from 'react';
-import { readConfObject } from '@jbrowse/core/configuration';
-import { ErrorMessage } from '@jbrowse/core/ui';
-import { getSession } from '@jbrowse/core/util';
-import { getTrackName } from '@jbrowse/core/util/tracks';
-import { MenuItem, Paper, Select, Typography } from '@mui/material';
-import { observer } from 'mobx-react';
-const ImportSyntenyTrackSelector = observer(function ({ model, assembly1, assembly2, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack, }) {
-    var _a;
-    const session = getSession(model);
-    const { tracks = [], sessionTracks = [] } = session;
-    const allTracks = [...tracks, ...sessionTracks];
-    const filteredTracks = allTracks.filter(track => {
-        const assemblyNames = readConfObject(track, 'assemblyNames');
-        return (assemblyNames.includes(assembly1) &&
-            assemblyNames.includes(assembly2) &&
-            track.type.includes('Synteny'));
-    });
-    const resetTrack = ((_a = filteredTracks[0]) === null || _a === void 0 ? void 0 : _a.trackId) || '';
-    const [value, setValue] = useState(resetTrack);
-    useEffect(() => {
-        if (value !== preConfiguredSyntenyTrack) {
-            setPreConfiguredSyntenyTrack(value);
-        }
-    }, [value, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack]);
-    return (React.createElement(Paper, { style: { padding: 12 } },
-        React.createElement(Typography, null, "Select a track from the select box below, the track will be shown when you hit \"Launch\"."),
-        filteredTracks.length ? (React.createElement(Select, { value: value, onChange: event => {
-                setValue(event.target.value);
-            } }, filteredTracks.map(track => (React.createElement(MenuItem, { key: track.trackId, value: track.trackId }, getTrackName(track, session)))))) : (React.createElement(ErrorMessage, { error: `No synteny tracks found for ${assembly1},${assembly2}` }))));
-});
-export default ImportSyntenyTrackSelector;

package/esm/LinearSyntenyView/components/ImportForm/TrackSelectorUtil.d.ts

@@ -1,14 +0,0 @@
-import React from 'react';
-import type { LinearSyntenyViewModel } from '../../model';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { SnapshotIn } from 'mobx-state-tree';
-type Conf = SnapshotIn<AnyConfigurationModel>;
-export default function TrackSelector({ model, assembly1, assembly2, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack, setUserOpenedSyntenyTrack, }: {
-    model: LinearSyntenyViewModel;
-    assembly1: string;
-    assembly2: string;
-    preConfiguredSyntenyTrack: string | undefined;
-    setUserOpenedSyntenyTrack: (arg: Conf) => void;
-    setPreConfiguredSyntenyTrack: (arg?: string) => void;
-}): React.JSX.Element;
-export {};

package/esm/LinearSyntenyView/components/ImportForm/TrackSelectorUtil.js

@@ -1,23 +0,0 @@
-import React, { useEffect, useState } from 'react';
-import { FormControl, FormControlLabel, Radio, RadioGroup } from '@mui/material';
-import ImportCustomTrack from './AddCustomTrack';
-import ImportSyntenyTrackSelector from './TrackSelector';
-export default function TrackSelector({ model, assembly1, assembly2, preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack, setUserOpenedSyntenyTrack, }) {
-    const [choice, setChoice] = useState('tracklist');
-    useEffect(() => {
-        if (choice === 'none') {
-            setPreConfiguredSyntenyTrack(undefined);
-            setUserOpenedSyntenyTrack(undefined);
-        }
-    }, [choice, setPreConfiguredSyntenyTrack, setUserOpenedSyntenyTrack]);
-    return (React.createElement("div", null,
-        React.createElement(FormControl, null,
-            React.createElement(RadioGroup, { row: true, value: choice, onChange: event => {
-                    setChoice(event.target.value);
-                }, "aria-labelledby": "group-label" },
-                React.createElement(FormControlLabel, { value: "none", control: React.createElement(Radio, null), label: "None" }),
-                React.createElement(FormControlLabel, { value: "tracklist", control: React.createElement(Radio, null), label: "Existing track" }),
-                React.createElement(FormControlLabel, { value: "custom", control: React.createElement(Radio, null), label: "New track" }))),
-        choice === 'custom' ? (React.createElement(ImportCustomTrack, { setUserOpenedSyntenyTrack: setUserOpenedSyntenyTrack, assembly2: assembly2, assembly1: assembly1 })) : null,
-        choice === 'tracklist' ? (React.createElement(ImportSyntenyTrackSelector, { key: `${assembly1}-${assembly2}`, model: model, assembly1: assembly1, assembly2: assembly2, preConfiguredSyntenyTrack: preConfiguredSyntenyTrack, setPreConfiguredSyntenyTrack: setPreConfiguredSyntenyTrack })) : null));
-}