@jbrowse/plugin-linear-comparative-view 2.17.0 → 2.18.0

package/esm/LinearSyntenyView/model.d.ts

@@ -1,7 +1,7 @@
-import React from 'react';
-import { Instance } from 'mobx-state-tree';
-import PluginManager from '@jbrowse/core/PluginManager';
+import type React from 'react';
 import { Curves } from './components/Icons';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { Instance } from 'mobx-state-tree';
 export interface ExportSvgOptions {
     rasterizeLayers?: boolean;
     scale?: number;
@@ -18,11 +18,6 @@ export interface ExportSvgOptions {
     themeName?: string;
     trackLabels?: string;
 }
-/**
- * #stateModel LinearSyntenyView
- * extends
- * - [LinearComparativeView](../linearcomparativeview)
- */
 export default function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -98,6 +93,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         scaleBarDisplayPrefix(): string | undefined;
         MiniControlsComponent(): React.FC<any>;
         HeaderComponent(): React.FC<any>;
+        readonly assembliesNotFound: string | undefined;
         readonly assemblyErrors: string;
         readonly assembliesInitialized: boolean;
         readonly initialized: boolean;
@@ -310,29 +306,12 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
 } & {
     afterAttach(): void;
 } & {
-    /**
-     * #action
-     */
     toggleCurves(): void;
-    /**
-     * #action
-     */
     toggleCIGAR(): void;
-    /**
-     * #action
-     */
     showAllRegions(): void;
 } & {
-    /**
-     * #action
-     */
     exportSvg(opts: ExportSvgOptions): Promise<void>;
 } & {
-    /**
-     * #method
-     * includes a subset of view menu options because the full list is a
-     * little overwhelming
-     */
     headerMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
         label: string;
         onClick: () => void;
@@ -366,9 +345,6 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         checked?: undefined;
         type?: undefined;
     })[];
-    /**
-     * #method
-     */
     menuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
         label: string;
         icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
@@ -453,6 +429,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         scaleBarDisplayPrefix(): string | undefined;
         MiniControlsComponent(): React.FC<any>;
         HeaderComponent(): React.FC<any>;
+        readonly assembliesNotFound: string | undefined;
         readonly assemblyErrors: string;
         readonly assembliesInitialized: boolean;
         readonly initialized: boolean;

package/esm/LinearSyntenyView/model.js

@@ -1,54 +1,28 @@
 import { lazy } from 'react';
-import { types } from 'mobx-state-tree';
-import { transaction } from 'mobx';
 import { getSession } from '@jbrowse/core/util';
-import { saveAs } from 'file-saver';
-// icons
 import CropFreeIcon from '@mui/icons-material/CropFree';
-import VisibilityIcon from '@mui/icons-material/Visibility';
 import PhotoCameraIcon from '@mui/icons-material/PhotoCamera';
+import VisibilityIcon from '@mui/icons-material/Visibility';
+import { saveAs } from 'file-saver';
+import { transaction } from 'mobx';
+import { types } from 'mobx-state-tree';
 import { Curves } from './components/Icons';
-// locals
 import baseModel from '../LinearComparativeView/model';
-// lazies
 const ExportSvgDialog = lazy(() => import('./components/ExportSvgDialog'));
-/**
- * #stateModel LinearSyntenyView
- * extends
- * - [LinearComparativeView](../linearcomparativeview)
- */
 export default function stateModelFactory(pluginManager) {
     return types
         .compose('LinearSyntenyView', baseModel(pluginManager), types.model({
-        /**
-         * #property
-         */
         type: types.literal('LinearSyntenyView'),
-        /**
-         * #property/
-         */
         drawCIGAR: true,
-        /**
-         * #property
-         */
         drawCurves: false,
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         toggleCurves() {
             self.drawCurves = !self.drawCurves;
         },
-        /**
-         * #action
-         */
         toggleCIGAR() {
             self.drawCIGAR = !self.drawCIGAR;
         },
-        /**
-         * #action
-         */
         showAllRegions() {
             transaction(() => {
                 for (const view of self.views) {
@@ -58,9 +32,6 @@ export default function stateModelFactory(pluginManager) {
         },
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         async exportSvg(opts) {
             const { renderToSvg } = await import('./svgcomponents/SVGLinearSyntenyView');
             const html = await renderToSvg(self, opts);
@@ -72,11 +43,6 @@ export default function stateModelFactory(pluginManager) {
         const superHeaderMenuItems = self.headerMenuItems;
         const superMenuItems = self.menuItems;
         return {
-            /**
-             * #method
-             * includes a subset of view menu options because the full list is a
-             * little overwhelming
-             */
             headerMenuItems() {
                 return [
                     ...superHeaderMenuItems(),
@@ -118,9 +84,6 @@ export default function stateModelFactory(pluginManager) {
                     },
                 ];
             },
-            /**
-             * #method
-             */
             menuItems() {
                 return [
                     ...superMenuItems(),

package/esm/LinearSyntenyView/svgcomponents/SVGBackground.js

@@ -1,6 +1,6 @@
 import React from 'react';
-import { useTheme } from '@mui/material';
 import { stripAlpha } from '@jbrowse/core/util';
+import { useTheme } from '@mui/material';
 export default function SVGBackground({ width, height, shift, }) {
     const theme = useTheme();
     return (React.createElement("rect", { width: width + shift * 2, height: height, fill: stripAlpha(theme.palette.background.default) }));

package/esm/LinearSyntenyView/svgcomponents/SVGLinearGenomeView.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
+import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
 export default function SVGLinearGenomeView({ trackLabelOffset, fontSize, textHeight, trackLabels, view, displayResults, rulerHeight, shift, }: {
     textHeight: number;
     trackLabels: string;

package/esm/LinearSyntenyView/svgcomponents/SVGLinearGenomeView.js

@@ -1,7 +1,7 @@
 import React from 'react';
-import { useTheme } from '@mui/material';
 import { getFillProps } from '@jbrowse/core/util';
-import { SVGTracks, SVGRuler, } from '@jbrowse/plugin-linear-genome-view';
+import { SVGRuler, SVGTracks } from '@jbrowse/plugin-linear-genome-view';
+import { useTheme } from '@mui/material';
 export default function SVGLinearGenomeView({ trackLabelOffset, fontSize, textHeight, trackLabels, view, displayResults, rulerHeight, shift, }) {
     const theme = useTheme();
     return (React.createElement("g", { transform: `translate(${shift} ${fontSize})` },

package/esm/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.d.ts

@@ -1,2 +1,2 @@
-import { ExportSvgOptions, LinearSyntenyViewModel } from '../model';
+import type { ExportSvgOptions, LinearSyntenyViewModel } from '../model';
 export declare function renderToSvg(model: LinearSyntenyViewModel, opts: ExportSvgOptions): Promise<string>;

package/esm/LinearSyntenyView/svgcomponents/SVGLinearSyntenyView.js

@@ -1,16 +1,14 @@
 import React from 'react';
-import { ThemeProvider } from '@mui/material';
-import { getRoot } from 'mobx-state-tree';
-import { when } from 'mobx';
-import { getSession, getSerializedSvg, max, measureText, ReactRendering, renderToAbstractCanvas, renderToStaticMarkup, sum, } from '@jbrowse/core/util';
-import { getTrackName } from '@jbrowse/core/util/tracks';
 import { createJBrowseTheme } from '@jbrowse/core/ui';
+import { ReactRendering, getSerializedSvg, getSession, max, measureText, renderToAbstractCanvas, renderToStaticMarkup, sum, } from '@jbrowse/core/util';
+import { getTrackName } from '@jbrowse/core/util/tracks';
 import { totalHeight } from '@jbrowse/plugin-linear-genome-view';
-// locals
+import { ThemeProvider } from '@mui/material';
+import { when } from 'mobx';
+import { getRoot } from 'mobx-state-tree';
 import SVGBackground from './SVGBackground';
 import SVGLinearGenomeView from './SVGLinearGenomeView';
 import { drawRef } from '../../LinearSyntenyDisplay/drawSynteny';
-// render LGV to SVG
 export async function renderToSvg(model, opts) {
     var _a;
     await when(() => model.initialized);
@@ -75,14 +73,11 @@ export async function renderToSvg(model, opts) {
             levelHeight ? (React.createElement("defs", null,
                 React.createElement("clipPath", { id: `synclip-${i}` },
                     React.createElement("rect", { x: 0, y: 0, width: width, height: levelHeight })))) : null,
-            React.createElement("g", { transform: `translate(${shift + trackLabelOffset} ${fontSize})`, clipPath: `url(#synclip-${i})` }, rendering === null || rendering === void 0 ? void 0 : rendering.map((r, i) => (
-            /* biome-ignore lint/suspicious/noArrayIndexKey: */
-            React.createElement(ReactRendering, { key: i, rendering: r })))),
+            React.createElement("g", { transform: `translate(${shift + trackLabelOffset} ${fontSize})`, clipPath: `url(#synclip-${i})` }, rendering === null || rendering === void 0 ? void 0 : rendering.map((r, i) => (React.createElement(ReactRendering, { key: i, rendering: r })))),
             React.createElement("g", { transform: `translate(0 ${levelHeight})` },
                 React.createElement(SVGLinearGenomeView, { rulerHeight: rulerHeight, shift: shift, trackLabelOffset: trackLabelOffset, textHeight: textHeight, trackLabels: trackLabels, displayResults: displayResults[i], key: view.id, view: view, fontSize: fontSize }))));
         currOffset += height + fontSize + rulerHeight + levelHeight;
     }
-    // the xlink namespace is used for rendering <image> tag
     return renderToStaticMarkup(React.createElement(ThemeProvider, { theme: theme },
         React.createElement(Wrapper, null,
             React.createElement("svg", { width: width, height: totalHeightSvg, xmlns: "http://www.w3.org/2000/svg", xmlnsXlink: "http://www.w3.org/1999/xlink", viewBox: [0, 0, w + shift * 2, totalHeightSvg].toString() },

package/esm/LinearSyntenyViewHelper/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function LinearSyntenyViewF(pluginManager: PluginManager): void;

package/esm/LinearSyntenyViewHelper/stateModelFactory.d.ts

@@ -1,5 +1,5 @@
-import { Instance } from 'mobx-state-tree';
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { Instance } from 'mobx-state-tree';
 export declare function linearSyntenyViewHelperModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").IType<string | undefined, string, string>;
@@ -7,21 +7,9 @@ export declare function linearSyntenyViewHelperModelFactory(pluginManager: Plugi
     height: import("mobx-state-tree").IType<number | undefined, number, number>;
     level: import("mobx-state-tree").ISimpleType<number>;
 }, {
-    /**
-     * #action
-     */
     setHeight(n: number): number;
-    /**
-     * #action
-     */
     showTrack(trackId: string, initialSnapshot?: {}): void;
-    /**
-     * #action
-     */
     hideTrack(trackId: string): number;
-    /**
-     * #action
-     */
     toggleTrack(trackId: string): boolean;
 } & {
     readonly assemblyNames: (string | undefined)[];

package/esm/LinearSyntenyViewHelper/stateModelFactory.js

@@ -1,41 +1,20 @@
-import { getRoot, resolveIdentifier, types, getParent, } from 'mobx-state-tree';
-import { transaction } from 'mobx';
 import { ElementId } from '@jbrowse/core/util/types/mst';
+import { transaction } from 'mobx';
+import { getParent, getRoot, resolveIdentifier, types } from 'mobx-state-tree';
 export function linearSyntenyViewHelperModelFactory(pluginManager) {
     return types
         .model('LinearSyntenyViewHelper', {
-        /**
-         * #property
-         */
         id: ElementId,
-        /**
-         * #property
-         */
         type: 'LinearSyntenyViewHelper',
-        /**
-         * #property
-         */
         tracks: types.array(pluginManager.pluggableMstType('track', 'stateModel')),
-        /**
-         * #property
-         */
         height: 100,
-        /**
-         * #property
-         */
         level: types.number,
     })
         .actions(self => ({
-        /**
-         * #action
-         */
         setHeight(n) {
             self.height = n;
             return self.height;
         },
-        /**
-         * #action
-         */
         showTrack(trackId, initialSnapshot = {}) {
             const schema = pluginManager.pluggableConfigSchemaType('track');
             const configuration = resolveIdentifier(schema, getRoot(self), trackId);
@@ -64,9 +43,6 @@ export function linearSyntenyViewHelperModelFactory(pluginManager) {
                 ],
             }));
         },
-        /**
-         * #action
-         */
         hideTrack(trackId) {
             const schema = pluginManager.pluggableConfigSchemaType('track');
             const config = resolveIdentifier(schema, getRoot(self), trackId);
@@ -78,9 +54,6 @@ export function linearSyntenyViewHelperModelFactory(pluginManager) {
             });
             return shownTracks.length;
         },
-        /**
-         * #action
-         */
         toggleTrack(trackId) {
             const hiddenCount = this.hideTrack(trackId);
             if (!hiddenCount) {

package/esm/SyntenyFeatureDetail/SyntenyFeatureDetail.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { SimpleFeatureSerialized } from '@jbrowse/core/util';
+import type { SimpleFeatureSerialized } from '@jbrowse/core/util';
 interface SyntenyFeatureDetailModel {
     trackId: string;
     featureData: SimpleFeatureSerialized;

package/esm/SyntenyFeatureDetail/SyntenyFeatureDetail.js

@@ -1,11 +1,9 @@
 import React, { lazy } from 'react';
+import BaseFeatureDetail from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
+import BaseCard from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard';
+import { SimpleFeature, assembleLocString, getSession, } from '@jbrowse/core/util';
 import { Link, Paper } from '@mui/material';
 import { observer } from 'mobx-react';
-// locals
-import BaseCard from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard';
-import BaseFeatureDetail from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
-import { assembleLocString, getSession, SimpleFeature, } from '@jbrowse/core/util';
-// lazies
 const LaunchSyntenyViewDialog = lazy(() => import('../LGVSyntenyDisplay/components/LaunchSyntenyViewDialog'));
 const CustomLinker = observer(function ({ model, }) {
     const { featureData, view, level, trackId } = model;
@@ -16,17 +14,10 @@ const CustomLinker = observer(function ({ model, }) {
                     event.preventDefault();
                     const { views } = view;
                     if (level !== undefined) {
-                        // level is "pre-known", and stored in the SyntenyFeatureWidget
-                        // model state e.g. when clicking on a feature from a
-                        // LinearSyntenyRendering
                         (_a = views[level]) === null || _a === void 0 ? void 0 : _a.navTo(featureData);
                         (_b = views[level + 1]) === null || _b === void 0 ? void 0 : _b.navTo(featureData.mate);
                     }
                     else {
-                        // best effort to find the right level. this is triggered for
-                        // example if a user clicks on a feature in a LGVSyntenyDisplay
-                        // in an existing LinearSyntenyView, there is no real proper
-                        // level "pre-known" to this situation
                         const f1 = featureData;
                         const f2 = featureData.mate;
                         const r1 = f1.assemblyName;
@@ -64,7 +55,7 @@ const CustomLinker = observer(function ({ model, }) {
                 } }, "Launch new linear synteny view on this feature"))));
 });
 const SyntenyFeatureDetail = observer(function ({ model, }) {
-    return (React.createElement(Paper, { "data-testid": "alignment-side-drawer" },
+    return (React.createElement(Paper, null,
         React.createElement(BaseFeatureDetail, { title: "Feature", model: model }),
         React.createElement(BaseCard, { title: "Link to view" },
             React.createElement(CustomLinker, { model: model }))));

package/esm/SyntenyFeatureDetail/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function SyntenyFeatureWidgetF(pluginManager: PluginManager): void;

package/esm/SyntenyFeatureDetail/index.js

@@ -1,18 +1,12 @@
 import { lazy } from 'react';
+import { stateModelFactory as BaseFeatureWidgetStateModelF } from '@jbrowse/core/BaseFeatureWidget';
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
 import WidgetType from '@jbrowse/core/pluggableElementTypes/WidgetType';
 import { types } from 'mobx-state-tree';
-import { stateModelFactory as BaseFeatureWidgetStateModelF } from '@jbrowse/core/BaseFeatureWidget';
 const configSchema = ConfigurationSchema('SyntenyFeatureWidget', {});
 function stateModelF(pluginManager) {
     return types.compose(BaseFeatureWidgetStateModelF(pluginManager), types.model('SyntenyFeatureWidget', {
-        /**
-         * #property
-         */
         type: types.literal('SyntenyFeatureWidget'),
-        /**
-         * #property
-         */
         level: types.maybe(types.number),
     }));
 }

package/esm/SyntenyTrack/configSchema.d.ts

@@ -1,4 +1,4 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     name: {
         description: string;

package/esm/SyntenyTrack/configSchema.js

@@ -1,15 +1,7 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
 import { createBaseTrackConfig } from '@jbrowse/core/pluggableElementTypes/models';
-/**
- * #config SyntenyTrack
- * extends
- * - [BaseTrack](../basetrack)
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const configSchema = (pluginManager) => ConfigurationSchema('SyntenyTrack', {}, {
-    /**
-     * #baseConfiguration
-     */
     baseConfiguration: createBaseTrackConfig(pluginManager),
 });
 export default configSchema;

package/esm/SyntenyTrack/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function registerSyntenyTrack(pluginManager: PluginManager): void;

package/esm/SyntenyTrack/index.js

@@ -1,5 +1,5 @@
-import { createBaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
 import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
+import { createBaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
 import configSchemaF from './configSchema';
 export default function registerSyntenyTrack(pluginManager) {
     pluginManager.addTrackType(() => {

package/esm/index.d.ts

@@ -1,5 +1,5 @@
 import Plugin from '@jbrowse/core/Plugin';
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default class LinearComparativeViewPlugin extends Plugin {
     name: string;
     install(pluginManager: PluginManager): void;

package/esm/index.js

@@ -1,16 +1,16 @@
 import Plugin from '@jbrowse/core/Plugin';
 import { isAbstractMenuManager } from '@jbrowse/core/util';
 import CalendarIcon from '@mui/icons-material/CalendarViewDay';
+import LGVSyntenyDisplayF from './LGVSyntenyDisplay';
+import LaunchLinearSyntenyViewF from './LaunchLinearSyntenyView';
 import LinearComparativeDisplayF from './LinearComparativeDisplay';
 import LinearComparativeViewF from './LinearComparativeView';
+import LinearReadVsRefMenuItemF from './LinearReadVsRef';
 import LinearSyntenyDisplayF from './LinearSyntenyDisplay';
-import LGVSyntenyDisplayF from './LGVSyntenyDisplay';
 import LinearSyntenyViewF from './LinearSyntenyView';
 import LinearSyntenyViewHelperF from './LinearSyntenyViewHelper';
-import LaunchLinearSyntenyViewF from './LaunchLinearSyntenyView';
-import SyntenyTrackF from './SyntenyTrack';
-import LinearReadVsRefMenuItemF from './LinearReadVsRef';
 import SyntenyFeatureWidgetF from './SyntenyFeatureDetail';
+import SyntenyTrackF from './SyntenyTrack';
 export default class LinearComparativeViewPlugin extends Plugin {
     constructor() {
         super(...arguments);

package/esm/util.d.ts

@@ -1,5 +1,5 @@
-import { Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
+import type { Feature } from '@jbrowse/core/util/simpleFeature';
+import type { Region } from '@jbrowse/core/util/types';
 export type LayoutRecord = [number, number, number, number];
 export interface ReducedLinearGenomeView {
     bpPerPx: number;

package/esm/util.js

@@ -19,18 +19,14 @@ export function getTrackPos(view, trackConfigId) {
     const idx = view.tracks.findIndex(t => t.configuration === trackConfigId);
     let accum = 0;
     for (let i = 0; i < idx; i += 1) {
-        accum += view.tracks[i].height + 3; // +1px for trackresizehandle
+        accum += view.tracks[i].height + 3;
     }
     return accum;
 }
-// Uses bpToPx to get the screen pixel coordinates but ignores some conditions
-// where bpToPx could return undefined
 export function getPxFromCoordinate(view, refName, coord) {
     var _a;
     return (((_a = bpToPx(view, { refName, coord })) === null || _a === void 0 ? void 0 : _a.offsetPx) || 0) - view.offsetPx;
 }
-// Retrieves the y-position of a layout record in a track
-// If track not found returns 0
 export function overlayYPos(trackConfigId, level, views, c, cond) {
     const track = views[level].tracks.find(t => t.configuration === trackConfigId);
     const ypos = track
@@ -40,11 +36,6 @@ export function overlayYPos(trackConfigId, level, views, c, cond) {
         : 0;
     return ypos + (cond ? cheight(c) : 0);
 }
-// Returns the pixel screen position of a refName:coord input, or undefined if
-// the input could not be located. Uses view.displayedRegions as a representation
-// of what is on the screen
-//
-// Note: does not consider that this refName:coord input could multi-match
 function bpToPx(view, { refName, coord }) {
     let offsetBp = 0;
     const index = view.displayedRegions.findIndex(r => {
@@ -64,7 +55,6 @@ function bpToPx(view, { refName, coord }) {
     }
     return undefined;
 }
-// Returns either 0 or height depending on condition
 export function interstitialYPos(cond, height) {
     return cond ? 0 : height;
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-comparative-view",
-  "version": "2.17.0",
+  "version": "2.18.0",
   "description": "JBrowse 2 linear comparative view",
   "keywords": [
     "jbrowse",
@@ -36,9 +36,7 @@
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
-    "@floating-ui/react": "^0.26.3",
     "@mui/icons-material": "^6.0.0",
-    "clone": "^2.1.2",
     "copy-to-clipboard": "^3.3.1",
     "file-saver": "^2.0.0"
   },
@@ -61,5 +59,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "eed30b5e671f8f7823652d7cecc51aa89226de46"
+  "gitHead": "c344ea60099cb7e460b77f15808946b24a7eee74"
 }