@jbrowse/plugin-linear-comparative-view 2.13.0 → 2.13.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearComparativeView/model.d.ts +7 -3
- package/dist/LinearComparativeView/model.js +7 -9
- package/dist/LinearSyntenyView/model.d.ts +4 -3
- package/esm/LinearComparativeView/model.d.ts +7 -3
- package/esm/LinearComparativeView/model.js +7 -9
- package/esm/LinearSyntenyView/model.d.ts +4 -3
- package/package.json +2 -2
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@@ -40,6 +40,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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@@ -61,12 +62,12 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
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} & {
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scaleBarDisplayPrefix(): "";
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readonly trackLabelsSetting: any;
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readonly width: number;
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readonly interRegionPaddingWidth: number;
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readonly assemblyNames: string[];
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} & {
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scaleBarDisplayPrefix(): string;
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MiniControlsComponent(): import("react").FC<any>;
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HeaderComponent(): import("react").FC<any>;
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readonly assemblyErrors: string;
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@@ -96,6 +97,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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rewriteOnClicks(trackType: string, viewMenuActions: MenuItem[]): void;
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readonly trackTypeActions: Map<string, MenuItem[]>;
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} & {
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setShowTrackOutlines(arg: boolean): void;
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setColorByCDS(flag: boolean): void;
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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@@ -215,8 +217,6 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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} | undefined;
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} & {
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afterCreate(): void;
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} & {
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scaleBarDisplayPrefix(): string;
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}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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@@ -238,6 +238,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}>>, import("mobx-state-tree")._NotCustomized>>;
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viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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}, {
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@@ -249,6 +250,9 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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setWidth(newWidth: number): void;
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setMinimized(flag: boolean): void;
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} & {
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/**
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* #volatile
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*/
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width: number | undefined;
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} & {
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/**
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@@ -44,8 +44,6 @@ const ReturnToImportFormDialog = (0, react_1.lazy)(() => Promise.resolve().then(
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* - [BaseViewModel](../baseviewmodel)
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*/
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function stateModelFactory(pluginManager) {
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const model = pluginManager.getViewType('LinearGenomeView')
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.stateModel;
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return mobx_state_tree_1.types
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.compose('LinearComparativeView', BaseViewModel_1.default, mobx_state_tree_1.types.model({
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* #property
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* currently this is limited to an array of two
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*/
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views: mobx_state_tree_1.types.array(
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return self.assemblyNames[0];
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},
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}))),
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views: mobx_state_tree_1.types.array(pluginManager.getViewType('LinearGenomeView')
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.stateModel),
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/**
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* #property
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* this represents tracks specific to this view specifically used
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*
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* this represents tracks specific to this view specifically used for
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* read vs ref dotplots where this track would not really apply
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* elsewhere
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*/
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viewTrackConfigs: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('track')),
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}))
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.volatile(() => ({
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/**
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*/
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width: undefined,
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}))
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.views(self => ({
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@@ -56,6 +56,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
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} & {
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scaleBarDisplayPrefix(): "";
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readonly trackLabelsSetting: any;
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readonly width: number;
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readonly interRegionPaddingWidth: number;
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readonly assemblyNames: string[];
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} & {
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scaleBarDisplayPrefix(): string;
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MiniControlsComponent(): React.FC<any>;
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HeaderComponent(): React.FC<any>;
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readonly assemblyErrors: string;
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@@ -112,6 +113,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
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readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
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} & {
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setShowTrackOutlines(arg: boolean): void;
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setColorByCDS(flag: boolean): void;
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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@@ -231,8 +233,6 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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} | undefined;
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} & {
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afterCreate(): void;
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} & {
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scaleBarDisplayPrefix(): string;
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}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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@@ -254,6 +254,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}>>, import("mobx-state-tree")._NotCustomized>>;
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viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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} & {
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@@ -40,6 +40,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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@@ -61,12 +62,12 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
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} & {
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scaleBarDisplayPrefix(): "";
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readonly trackLabelsSetting: any;
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readonly width: number;
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readonly interRegionPaddingWidth: number;
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readonly assemblyNames: string[];
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} & {
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scaleBarDisplayPrefix(): string;
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MiniControlsComponent(): import("react").FC<any>;
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HeaderComponent(): import("react").FC<any>;
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readonly assemblyErrors: string;
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@@ -96,6 +97,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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rewriteOnClicks(trackType: string, viewMenuActions: MenuItem[]): void;
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readonly trackTypeActions: Map<string, MenuItem[]>;
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} & {
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setShowTrackOutlines(arg: boolean): void;
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setColorByCDS(flag: boolean): void;
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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@@ -215,8 +217,6 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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} | undefined;
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} & {
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afterCreate(): void;
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} & {
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scaleBarDisplayPrefix(): string;
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}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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@@ -238,6 +238,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}>>, import("mobx-state-tree")._NotCustomized>>;
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viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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}, {
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@@ -249,6 +250,9 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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setWidth(newWidth: number): void;
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setMinimized(flag: boolean): void;
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} & {
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/**
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* #volatile
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*/
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width: number | undefined;
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} & {
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/**
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@@ -16,8 +16,6 @@ const ReturnToImportFormDialog = lazy(() => import('@jbrowse/core/ui/ReturnToImp
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* - [BaseViewModel](../baseviewmodel)
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*/
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function stateModelFactory(pluginManager) {
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return types
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.compose('LinearComparativeView', BaseViewModel, types.model({
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* #property
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* currently this is limited to an array of two
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*/
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views: types.array(
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return self.assemblyNames[0];
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views: types.array(pluginManager.getViewType('LinearGenomeView')
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.stateModel),
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/**
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* #property
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* this represents tracks specific to this view specifically used
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*
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* this represents tracks specific to this view specifically used for
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* read vs ref dotplots where this track would not really apply
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* elsewhere
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*/
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viewTrackConfigs: types.array(pluginManager.pluggableConfigSchemaType('track')),
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}))
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.volatile(() => ({
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*/
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width: undefined,
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}))
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.views(self => ({
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
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rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
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} & {
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scaleBarDisplayPrefix(): "";
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readonly trackLabelsSetting: any;
|
|
82
82
|
readonly width: number;
|
|
83
83
|
readonly interRegionPaddingWidth: number;
|
|
84
84
|
readonly assemblyNames: string[];
|
|
85
85
|
} & {
|
|
86
|
+
scaleBarDisplayPrefix(): string;
|
|
86
87
|
MiniControlsComponent(): React.FC<any>;
|
|
87
88
|
HeaderComponent(): React.FC<any>;
|
|
88
89
|
readonly assemblyErrors: string;
|
|
@@ -112,6 +113,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
112
113
|
rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
|
|
113
114
|
readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
|
|
114
115
|
} & {
|
|
116
|
+
setShowTrackOutlines(arg: boolean): void;
|
|
115
117
|
setColorByCDS(flag: boolean): void;
|
|
116
118
|
setShowCytobands(flag: boolean): void;
|
|
117
119
|
setWidth(newWidth: number): void;
|
|
@@ -231,8 +233,6 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
231
233
|
} | undefined;
|
|
232
234
|
} & {
|
|
233
235
|
afterCreate(): void;
|
|
234
|
-
} & {
|
|
235
|
-
scaleBarDisplayPrefix(): string;
|
|
236
236
|
}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
|
|
237
237
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
238
238
|
displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
@@ -254,6 +254,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
254
254
|
showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
255
255
|
highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
|
|
256
256
|
colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
257
|
+
showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
257
258
|
}>>, import("mobx-state-tree")._NotCustomized>>;
|
|
258
259
|
viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
259
260
|
} & {
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-linear-comparative-view",
|
|
3
|
-
"version": "2.13.
|
|
3
|
+
"version": "2.13.1",
|
|
4
4
|
"description": "JBrowse 2 linear comparative view",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -61,5 +61,5 @@
|
|
|
61
61
|
"publishConfig": {
|
|
62
62
|
"access": "public"
|
|
63
63
|
},
|
|
64
|
-
"gitHead": "
|
|
64
|
+
"gitHead": "fcebca71cc1d066654603e1a9accfa6c6d4f764d"
|
|
65
65
|
}
|