@jbrowse/plugin-linear-comparative-view 2.12.3 → 2.13.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LGVSyntenyDisplay/model.d.ts +3 -1
- package/dist/LinearComparativeView/model.d.ts +7 -0
- package/dist/LinearComparativeView/model.js +5 -2
- package/dist/LinearSyntenyView/model.d.ts +4 -0
- package/esm/LGVSyntenyDisplay/model.d.ts +3 -1
- package/esm/LinearComparativeView/model.d.ts +7 -0
- package/esm/LinearComparativeView/model.js +5 -2
- package/esm/LinearSyntenyView/model.d.ts +4 -0
- package/package.json +2 -2
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@@ -23,7 +23,9 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree"
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reversed: import("mobx-state-tree" /**
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* #property
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*/).IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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@@ -40,6 +40,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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@@ -66,6 +67,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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readonly interRegionPaddingWidth: number;
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readonly assemblyNames: string[];
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} & {
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scaleBarDisplayPrefix(): string;
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MiniControlsComponent(): import("react").FC<any>;
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HeaderComponent(): import("react").FC<any>;
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readonly assemblyErrors: string;
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@@ -95,6 +97,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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rewriteOnClicks(trackType: string, viewMenuActions: MenuItem[]): void;
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readonly trackTypeActions: Map<string, MenuItem[]>;
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} & {
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setShowTrackOutlines(arg: boolean): void;
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setColorByCDS(flag: boolean): void;
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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@@ -235,6 +238,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}>>, import("mobx-state-tree")._NotCustomized>>;
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viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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}, {
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@@ -246,6 +250,9 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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setWidth(newWidth: number): void;
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setMinimized(flag: boolean): void;
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} & {
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/**
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* #volatile
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*/
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width: number | undefined;
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} & {
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/**
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@@ -82,13 +82,16 @@ function stateModelFactory(pluginManager) {
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.stateModel),
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/**
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* #property
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* this represents tracks specific to this view specifically used
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*
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* this represents tracks specific to this view specifically used for
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* read vs ref dotplots where this track would not really apply
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* elsewhere
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*/
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viewTrackConfigs: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('track')),
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}))
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.volatile(() => ({
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/**
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*/
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width: undefined,
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}))
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.views(self => ({
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@@ -56,6 +56,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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@@ -82,6 +83,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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readonly interRegionPaddingWidth: number;
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readonly assemblyNames: string[];
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} & {
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scaleBarDisplayPrefix(): string;
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MiniControlsComponent(): React.FC<any>;
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HeaderComponent(): React.FC<any>;
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readonly assemblyErrors: string;
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@@ -111,6 +113,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
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readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
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} & {
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setShowTrackOutlines(arg: boolean): void;
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setColorByCDS(flag: boolean): void;
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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@@ -251,6 +254,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}>>, import("mobx-state-tree")._NotCustomized>>;
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viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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} & {
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@@ -23,7 +23,9 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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-
reversed: import("mobx-state-tree"
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+
reversed: import("mobx-state-tree" /**
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* #property
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*/).IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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@@ -40,6 +40,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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+
showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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@@ -66,6 +67,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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readonly interRegionPaddingWidth: number;
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readonly assemblyNames: string[];
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} & {
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scaleBarDisplayPrefix(): string;
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MiniControlsComponent(): import("react").FC<any>;
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HeaderComponent(): import("react").FC<any>;
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readonly assemblyErrors: string;
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@@ -95,6 +97,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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rewriteOnClicks(trackType: string, viewMenuActions: MenuItem[]): void;
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readonly trackTypeActions: Map<string, MenuItem[]>;
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} & {
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setShowTrackOutlines(arg: boolean): void;
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setColorByCDS(flag: boolean): void;
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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@@ -235,6 +238,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}>>, import("mobx-state-tree")._NotCustomized>>;
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viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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}, {
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@@ -246,6 +250,9 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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setWidth(newWidth: number): void;
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setMinimized(flag: boolean): void;
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} & {
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/**
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* #volatile
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*/
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width: number | undefined;
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} & {
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/**
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@@ -54,13 +54,16 @@ function stateModelFactory(pluginManager) {
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.stateModel),
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/**
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* #property
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-
* this represents tracks specific to this view specifically used
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-
*
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* this represents tracks specific to this view specifically used for
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* read vs ref dotplots where this track would not really apply
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* elsewhere
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*/
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viewTrackConfigs: types.array(pluginManager.pluggableConfigSchemaType('track')),
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}))
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.volatile(() => ({
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/**
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* #volatile
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*/
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width: undefined,
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}))
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.views(self => ({
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@@ -56,6 +56,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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@@ -82,6 +83,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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readonly interRegionPaddingWidth: number;
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readonly assemblyNames: string[];
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} & {
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scaleBarDisplayPrefix(): string;
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MiniControlsComponent(): React.FC<any>;
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HeaderComponent(): React.FC<any>;
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readonly assemblyErrors: string;
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@@ -111,6 +113,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
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readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
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} & {
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setShowTrackOutlines(arg: boolean): void;
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setColorByCDS(flag: boolean): void;
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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@@ -251,6 +254,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
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colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}>>, import("mobx-state-tree")._NotCustomized>>;
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viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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} & {
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package/package.json
CHANGED
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{
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"name": "@jbrowse/plugin-linear-comparative-view",
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"version": "2.
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"version": "2.13.1",
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"description": "JBrowse 2 linear comparative view",
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"keywords": [
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"publishConfig": {
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"access": "public"
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},
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"gitHead": "
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"gitHead": "fcebca71cc1d066654603e1a9accfa6c6d4f764d"
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}
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