@jbrowse/plugin-linear-comparative-view 2.11.2 → 2.12.1

package/esm/LinearSyntenyView/model.d.ts

@@ -32,7 +32,6 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
     type: import("mobx-state-tree").ISimpleType<"LinearComparativeView">;
     trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
     showIntraviewLinks: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    linkViews: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     interactToggled: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     middleComparativeHeight: import("mobx-state-tree").IType<number | undefined, number, number>;
     tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
@@ -45,20 +44,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         type: import("mobx-state-tree").IType<string | undefined, string, string>;
         offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
         bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>; /**
-             * #property/
-             */
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-             * #action
-             */
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
         tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
         hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -81,15 +67,15 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
     } & {
         volatileWidth: number | undefined;
         minimumBlockWidth: number;
-        draggingTrackId: string | undefined;
+        draggingTrackId: undefined | string;
         volatileError: unknown;
         afterDisplayedRegionsSetCallbacks: Function[];
         scaleFactor: number;
         trackRefs: Record<string, HTMLDivElement>;
         coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
         coarseTotalBp: number;
-        leftOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
-        rightOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
+        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
+        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset;
     } & {
         readonly trackLabelsSetting: any;
         readonly width: number;
@@ -138,8 +124,8 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
         scrollTo(offsetPx: number): number;
         zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
-        setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
+        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset): void;
+        setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
         setNewView(bpPerPx: number, offsetPx: number): void;
         horizontallyFlip(): void;
         showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -152,30 +138,30 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         moveTrack(movingId: string, targetId: string): void;
         closeView(): void;
         toggleTrack(trackId: string): boolean;
-        setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+        setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
         setShowCenterLine(b: boolean): void;
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
         activateTrackSelector(): import("@jbrowse/core/util").Widget;
-        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
+        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset): {
             start: number;
             end: number;
             type: string;
-            regionNumber?: number | undefined;
-            reversed?: boolean | undefined;
+            regionNumber?: number;
+            reversed?: boolean;
             refName: string;
             assemblyName: string;
             key: string;
             offsetPx: number;
             widthPx: number;
-            variant?: string | undefined;
-            isLeftEndOfDisplayedRegion?: boolean | undefined;
+            variant?: string;
+            isLeftEndOfDisplayedRegion?: boolean;
         }[];
         afterDisplayedRegionsSet(cb: Function): void;
         horizontalScroll(distance: number): number;
         center(): void;
         showAllRegions(): void;
-        showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-        setDraggingTrackId(idx?: string | undefined): void;
+        showAllRegionsInAssembly(assemblyName?: string): void;
+        setDraggingTrackId(idx?: string): void;
         setScaleFactor(factor: number): void;
         clearView(): void;
         exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions): Promise<void>;
@@ -200,141 +186,13 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
         afterAttach(): void;
     } & {
-        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
-        navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset): void;
+        navToLocString(input: string, optAssemblyName?: string): Promise<void>;
         navToSearchString({ input, assembly, }: {
             input: string;
-            assembly: {
-                configuration: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean; /**
-                 * #property/
-                 */
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-            }, {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean; /**
-                 * #property/
-                 */
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+            assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
         }): Promise<void>;
-        navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
+        navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
         navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").NavLocation): void;
         navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").NavLocation[]): void;
     } & {
@@ -342,12 +200,12 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): {
             index: number;
             offsetPx: number;
         } | undefined;
-        centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
+        centerAt(coord: number, refName: string, regionNumber?: number): void;
         pxToBp(px: number): {
             coord: number;
             index: number;
@@ -357,7 +215,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
             offset: number;
             start: number;
             end: number;
-            reversed: boolean;
+            reversed?: boolean;
         };
         readonly centerLineInfo: {
             coord: number;
@@ -368,7 +226,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
             offset: number;
             start: number;
             end: number;
-            reversed: boolean;
+            reversed?: boolean;
         } | undefined;
     } & {
         afterCreate(): void;
@@ -381,20 +239,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         type: import("mobx-state-tree").IType<string | undefined, string, string>;
         offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
         bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>; /**
-             * #property/
-             */
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-             * #action
-             */
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
         tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
         hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -428,766 +273,13 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
     readonly refNames: string[][];
     readonly assemblyNames: string[];
 } & {
-    afterAttach(): void;
     beforeDestroy(): void;
-    onSubviewAction(actionName: string, path: string, args?: unknown[] | undefined): void;
+    onSubviewAction(actionName: string, path: string, args?: unknown[]): void;
     setWidth(newWidth: number): void;
-    setViews(views: import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>; /**
-             * #property/
-             */
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-             * #action
-             */
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    }>>[]): void;
-    removeView(view: {
-        id: string;
-        displayName: string | undefined;
-        minimized: boolean;
-        type: string;
-        offsetPx: number;
-        bpPerPx: number;
-        displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>; /**
-             * #property/
-             */
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-             * #action
-             */
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>; /**
-             * #property/
-             */
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-             * #action
-             */
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-        tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-        hideHeader: boolean;
-        hideHeaderOverview: boolean;
-        hideNoTracksActive: boolean;
-        trackSelectorType: string;
-        showCenterLine: boolean;
-        showCytobandsSetting: boolean;
-        trackLabels: string;
-        showGridlines: boolean;
-        highlight: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>>;
-        colorByCDS: boolean;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        width: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        setDisplayName(name: string): void;
-        setWidth(newWidth: number): void;
-        setMinimized(flag: boolean): void;
-    } & {
-        volatileWidth: number | undefined;
-        minimumBlockWidth: number;
-        draggingTrackId: string | undefined;
-        volatileError: unknown;
-        afterDisplayedRegionsSetCallbacks: Function[];
-        scaleFactor: number;
-        trackRefs: Record<string, HTMLDivElement>;
-        coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        coarseTotalBp: number;
-        leftOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
-        rightOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
-    } & {
-        readonly trackLabelsSetting: any;
-        readonly width: number;
-        readonly interRegionPaddingWidth: number;
-        readonly assemblyNames: string[];
-    } & {
-        MiniControlsComponent(): React.FC<any>;
-        HeaderComponent(): React.FC<any>;
-        readonly assemblyErrors: string;
-        readonly assembliesInitialized: boolean;
-        readonly initialized: boolean;
-        readonly hasDisplayedRegions: boolean;
-        readonly scaleBarHeight: number;
-        readonly headerHeight: number;
-        readonly trackHeights: number;
-        readonly trackHeightsWithResizeHandles: number;
-        readonly height: number;
-        readonly totalBp: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly error: {};
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly displayedRegionsTotalPx: number;
-        renderProps(): any;
-        searchScope(assemblyName: string): {
-            assemblyName: string;
-            includeAggregateIndexes: boolean;
-            tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-        };
-        getTrack(id: string): any;
-        rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-        rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-        readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-    } & {
-        setColorByCDS(flag: boolean): void;
-        setShowCytobands(flag: boolean): void;
-        setWidth(newWidth: number): void;
-        setError(error: unknown): void;
-        setHideHeader(b: boolean): void;
-        setHideHeaderOverview(b: boolean): void;
-        setHideNoTracksActive(b: boolean): void;
-        setShowGridlines(b: boolean): void;
-        addToHighlights(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-        setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>[] | undefined): void;
-        removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-        scrollTo(offsetPx: number): number;
-        zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
-        setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
-        setNewView(bpPerPx: number, offsetPx: number): void;
-        horizontallyFlip(): void;
-        showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-        hideTrack(trackId: string): number;
-    } & {
-        moveTrackDown(id: string): void;
-        moveTrackUp(id: string): void;
-        moveTrackToTop(id: string): void;
-        moveTrackToBottom(id: string): void;
-        moveTrack(movingId: string, targetId: string): void;
-        closeView(): void;
-        toggleTrack(trackId: string): boolean;
-        setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-        setShowCenterLine(b: boolean): void;
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        activateTrackSelector(): import("@jbrowse/core/util").Widget;
-        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
-            start: number;
-            end: number;
-            type: string;
-            regionNumber?: number | undefined;
-            reversed?: boolean | undefined;
-            refName: string;
-            assemblyName: string;
-            key: string;
-            offsetPx: number;
-            widthPx: number;
-            variant?: string | undefined;
-            isLeftEndOfDisplayedRegion?: boolean | undefined;
-        }[];
-        afterDisplayedRegionsSet(cb: Function): void;
-        horizontalScroll(distance: number): number;
-        center(): void;
-        showAllRegions(): void;
-        showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-        setDraggingTrackId(idx?: string | undefined): void;
-        setScaleFactor(factor: number): void;
-        clearView(): void;
-        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions): Promise<void>;
-    } & {
-        slide: (viewWidths: number) => void;
-    } & {
-        zoom: (targetBpPerPx: number) => void;
-    } & {
-        readonly canShowCytobands: boolean;
-        readonly showCytobands: boolean;
-        readonly anyCytobandsExist: boolean;
-        readonly cytobandOffset: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        readonly visibleLocStrings: string;
-        readonly coarseVisibleLocStrings: string;
-    } & {
-        setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-        afterAttach(): void;
-    } & {
-        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
-        navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
-        navToSearchString({ input, assembly, }: {
-            input: string;
-            assembly: {
-                configuration: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean; /**
-                 * #property/
-                 */
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-            }, {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean; /**
-                 * #property/
-                 */
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        }): Promise<void>;
-        navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
-        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").NavLocation): void;
-        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").NavLocation[]): void;
-    } & {
-        rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number | undefined;
-        }): {
-            index: number;
-            offsetPx: number;
-        } | undefined;
-        centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed: boolean;
-        };
-        readonly centerLineInfo: {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed: boolean;
-        } | undefined;
-    } & {
-        afterCreate(): void;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>; /**
-             * #property/
-             */
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-             * #action
-             */
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    }, {
-        width: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        setDisplayName(name: string): void;
-        setWidth(newWidth: number): void;
-        setMinimized(flag: boolean): void;
-    } & {
-        volatileWidth: number | undefined;
-        minimumBlockWidth: number;
-        draggingTrackId: string | undefined;
-        volatileError: unknown;
-        afterDisplayedRegionsSetCallbacks: Function[];
-        scaleFactor: number;
-        trackRefs: Record<string, HTMLDivElement>;
-        coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        coarseTotalBp: number;
-        leftOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
-        rightOffset: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined;
-    } & {
-        readonly trackLabelsSetting: any;
-        readonly width: number;
-        readonly interRegionPaddingWidth: number;
-        readonly assemblyNames: string[];
-    } & {
-        MiniControlsComponent(): React.FC<any>;
-        HeaderComponent(): React.FC<any>;
-        readonly assemblyErrors: string;
-        readonly assembliesInitialized: boolean;
-        readonly initialized: boolean;
-        readonly hasDisplayedRegions: boolean;
-        readonly scaleBarHeight: number;
-        readonly headerHeight: number;
-        readonly trackHeights: number;
-        readonly trackHeightsWithResizeHandles: number;
-        readonly height: number;
-        readonly totalBp: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly error: {};
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly displayedRegionsTotalPx: number;
-        renderProps(): any;
-        searchScope(assemblyName: string): {
-            assemblyName: string;
-            includeAggregateIndexes: boolean;
-            tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-        };
-        getTrack(id: string): any;
-        rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-        rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-        readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-    } & {
-        setColorByCDS(flag: boolean): void;
-        setShowCytobands(flag: boolean): void;
-        setWidth(newWidth: number): void;
-        setError(error: unknown): void;
-        setHideHeader(b: boolean): void;
-        setHideHeaderOverview(b: boolean): void;
-        setHideNoTracksActive(b: boolean): void;
-        setShowGridlines(b: boolean): void;
-        addToHighlights(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-        setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>[] | undefined): void;
-        removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-        scrollTo(offsetPx: number): number;
-        zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
-        setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
-        setNewView(bpPerPx: number, offsetPx: number): void;
-        horizontallyFlip(): void;
-        showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-        hideTrack(trackId: string): number;
-    } & {
-        moveTrackDown(id: string): void;
-        moveTrackUp(id: string): void;
-        moveTrackToTop(id: string): void;
-        moveTrackToBottom(id: string): void;
-        moveTrack(movingId: string, targetId: string): void;
-        closeView(): void;
-        toggleTrack(trackId: string): boolean;
-        setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-        setShowCenterLine(b: boolean): void;
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        activateTrackSelector(): import("@jbrowse/core/util").Widget;
-        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
-            start: number;
-            end: number;
-            type: string;
-            regionNumber?: number | undefined;
-            reversed?: boolean | undefined;
-            refName: string;
-            assemblyName: string;
-            key: string;
-            offsetPx: number;
-            widthPx: number;
-            variant?: string | undefined;
-            isLeftEndOfDisplayedRegion?: boolean | undefined;
-        }[];
-        afterDisplayedRegionsSet(cb: Function): void;
-        horizontalScroll(distance: number): number;
-        center(): void;
-        showAllRegions(): void;
-        showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-        setDraggingTrackId(idx?: string | undefined): void;
-        setScaleFactor(factor: number): void;
-        clearView(): void;
-        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions): Promise<void>;
-    } & {
-        slide: (viewWidths: number) => void;
-    } & {
-        zoom: (targetBpPerPx: number) => void;
-    } & {
-        readonly canShowCytobands: boolean;
-        readonly showCytobands: boolean;
-        readonly anyCytobandsExist: boolean;
-        readonly cytobandOffset: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        readonly visibleLocStrings: string;
-        readonly coarseVisibleLocStrings: string;
-    } & {
-        setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-        afterAttach(): void;
-    } & {
-        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
-        navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
-        navToSearchString({ input, assembly, }: {
-            input: string;
-            assembly: {
-                configuration: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean; /**
-                 * #property/
-                 */
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-            }, {
-                error: unknown;
-                loaded: boolean;
-                loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                refNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                lowerCaseRefNameAliases: {
-                    [x: string]: string | undefined;
-                } | undefined;
-                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-            } & {
-                getConf(arg: string): any;
-            } & {
-                readonly initialized: boolean; /**
-                 * #property/
-                 */
-                readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                readonly aliases: string[];
-                readonly displayName: string | undefined;
-                hasName(name: string): boolean;
-                readonly allAliases: string[];
-                readonly allRefNames: string[] | undefined;
-                readonly lowerCaseRefNames: string[] | undefined;
-                readonly allRefNamesWithLowerCase: string[] | undefined;
-                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                readonly refNameColors: string[];
-            } & {
-                readonly refNames: string[] | undefined;
-            } & {
-                getCanonicalRefName(refName: string): string | undefined;
-                getRefNameColor(refName: string): string | undefined;
-                isValidRefName(refName: string): boolean;
-            } & {
-                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                setError(e: unknown): void;
-                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                setRefNameAliases(aliases: {
-                    [x: string]: string | undefined;
-                }, lcAliases: {
-                    [x: string]: string | undefined;
-                }): void;
-                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                setLoadingP(p?: Promise<void> | undefined): void;
-                load(): Promise<void>;
-                loadPre(): Promise<void>;
-            } & {
-                getAdapterMapEntry(adapterConf: {
-                    [x: string]: unknown;
-                }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                getRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-                getReverseRefNameMapForAdapter(adapterConf: {
-                    [x: string]: unknown;
-                }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                    [x: string]: string | undefined;
-                }>;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        }): Promise<void>;
-        navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
-        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").NavLocation): void;
-        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").NavLocation[]): void;
-    } & {
-        rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number | undefined;
-        }): {
-            index: number;
-            offsetPx: number;
-        } | undefined;
-        centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed: boolean;
-        };
-        readonly centerLineInfo: {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed: boolean;
-        } | undefined;
-    } & {
-        afterCreate(): void;
-    }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>; /**
-             * #property/
-             */
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-             * #action
-             */
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    }>>, import("mobx-state-tree")._NotCustomized>>): void;
+    setViews(views: import("mobx-state-tree").SnapshotIn<import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel>[]): void;
+    removeView(view: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel): void;
     closeView(): void;
     setMiddleComparativeHeight(n: number): number;
-    toggleLinkViews(): void;
     activateTrackSelector(): import("@jbrowse/core/util").Widget | undefined;
     toggleTrack(trackId: string): boolean;
     showTrack(trackId: string, initialSnapshot?: {}): void;
@@ -1244,15 +336,6 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
         type: string;
         description: string;
         icon?: undefined;
-    } | {
-        label: string;
-        type: string;
-        checked: boolean;
-        onClick: () => void;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        description?: undefined;
     } | {
         label: string;
         type: string;