@jbrowse/plugin-linear-comparative-view 2.10.2 → 2.10.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (7) hide show
  1. package/dist/LGVSyntenyDisplay/model.d.ts +9 -2
  2. package/dist/LinearComparativeView/model.d.ts +3 -3
  3. package/dist/LinearSyntenyView/model.d.ts +7 -0
  4. package/esm/LGVSyntenyDisplay/model.d.ts +9 -2
  5. package/esm/LinearComparativeView/model.d.ts +3 -3
  6. package/esm/LinearSyntenyView/model.d.ts +7 -0
  7. package/package.json +2 -2
package/dist/LGVSyntenyDisplay/model.d.ts CHANGED
@@ -44,8 +44,15 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
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- model: any;
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- }) => any;
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+ model: {
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+ error?: unknown;
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+ reload: () => void;
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+ message: import("react").ReactNode;
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+ filled?: boolean | undefined;
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+ status?: string | undefined;
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+ reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ };
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+ }) => import("react").JSX.Element | undefined;
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  renderProps: any;
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  } & {
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  doReload(): void;
package/dist/LinearComparativeView/model.d.ts CHANGED
@@ -49,6 +49,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -63,9 +64,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  draggingTrackId: string | undefined;
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  volatileError: unknown;
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  afterDisplayedRegionsSetCallbacks: Function[];
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- scaleFactor: number; /**
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- * #action
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- */
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+ scaleFactor: number;
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  trackRefs: Record<string, HTMLDivElement>;
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  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  coarseTotalBp: number;
@@ -113,6 +112,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
package/dist/LinearSyntenyView/model.d.ts CHANGED
@@ -68,6 +68,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -130,6 +131,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -419,6 +421,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }>>[]): void;
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  removeView(view: {
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  id: string;
@@ -463,6 +466,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  showCytobandsSetting: boolean;
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  trackLabels: string;
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  showGridlines: boolean;
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+ highlight: (Required<import("@jbrowse/core/util").ParsedLocString> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>>) | undefined;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  width: number;
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  } & {
@@ -525,6 +529,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -788,6 +793,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
788
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -850,6 +856,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
package/esm/LGVSyntenyDisplay/model.d.ts CHANGED
@@ -44,8 +44,15 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
44
44
  message: string | undefined;
45
45
  maxHeightReached: boolean;
46
46
  ReactComponent: ({ model, }: {
47
- model: any;
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- }) => any;
47
+ model: {
48
+ error?: unknown;
49
+ reload: () => void;
50
+ message: import("react").ReactNode;
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+ filled?: boolean | undefined;
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+ status?: string | undefined;
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+ reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ };
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+ }) => import("react").JSX.Element | undefined;
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  renderProps: any;
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  } & {
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  doReload(): void;
package/esm/LinearComparativeView/model.d.ts CHANGED
@@ -49,6 +49,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -63,9 +64,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
63
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  draggingTrackId: string | undefined;
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  volatileError: unknown;
65
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  afterDisplayedRegionsSetCallbacks: Function[];
66
- scaleFactor: number; /**
67
- * #action
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- */
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+ scaleFactor: number;
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  trackRefs: Record<string, HTMLDivElement>;
70
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  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
71
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  coarseTotalBp: number;
@@ -113,6 +112,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
113
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  setHideHeaderOverview(b: boolean): void;
114
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  setHideNoTracksActive(b: boolean): void;
115
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  setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
117
117
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
package/esm/LinearSyntenyView/model.d.ts CHANGED
@@ -68,6 +68,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -130,6 +131,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
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  setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -419,6 +421,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
420
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }>>[]): void;
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  removeView(view: {
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  id: string;
@@ -463,6 +466,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  showCytobandsSetting: boolean;
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  trackLabels: string;
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  showGridlines: boolean;
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+ highlight: (Required<import("@jbrowse/core/util").ParsedLocString> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>>) | undefined;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  width: number;
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  } & {
@@ -525,6 +529,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
525
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  setHideHeaderOverview(b: boolean): void;
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  setHideNoTracksActive(b: boolean): void;
527
531
  setShowGridlines(b: boolean): void;
532
+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
529
534
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -788,6 +793,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
788
793
  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
789
794
  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
790
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
796
+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -850,6 +856,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
850
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  setHideHeaderOverview(b: boolean): void;
851
857
  setHideNoTracksActive(b: boolean): void;
852
858
  setShowGridlines(b: boolean): void;
859
+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
853
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  scrollTo(offsetPx: number): number;
854
861
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
855
862
  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
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  "name": "@jbrowse/plugin-linear-comparative-view",
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- "version": "2.10.2",
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+ "version": "2.10.3",
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  "description": "JBrowse 2 linear comparative view",
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  "keywords": [
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  "jbrowse",
@@ -61,5 +61,5 @@
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  "publishConfig": {
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  "access": "public"
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  },
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- "gitHead": "7ca3b7db337ebd88853e2d96cdab940ed550c4fb"
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+ "gitHead": "c8fc800cd17decd72b2e971c7a6add3b95214e72"
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  }