@jbrowse/plugin-linear-comparative-view 2.10.1 → 2.10.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/dist/LGVSyntenyDisplay/model.d.ts +9 -2
  2. package/dist/LinearComparativeView/model.d.ts +8 -8
  3. package/dist/LinearSyntenyView/components/ExportSvgDialog.d.ts +1 -1
  4. package/dist/LinearSyntenyView/components/ExportSvgDialog.js +2 -2
  5. package/dist/LinearSyntenyView/model.d.ts +22 -15
  6. package/esm/LGVSyntenyDisplay/model.d.ts +9 -2
  7. package/esm/LinearComparativeView/model.d.ts +8 -8
  8. package/esm/LinearSyntenyView/components/ExportSvgDialog.d.ts +1 -1
  9. package/esm/LinearSyntenyView/components/ExportSvgDialog.js +1 -1
  10. package/esm/LinearSyntenyView/model.d.ts +22 -15
  11. package/package.json +2 -2
package/dist/LGVSyntenyDisplay/model.d.ts CHANGED
@@ -44,8 +44,15 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
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- model: any;
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- }) => any;
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+ model: {
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+ error?: unknown;
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+ reload: () => void;
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+ message: import("react").ReactNode;
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+ filled?: boolean | undefined;
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+ status?: string | undefined;
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+ reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ };
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+ }) => import("react").JSX.Element | undefined;
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  renderProps: any;
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  } & {
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  doReload(): void;
package/dist/LinearComparativeView/model.d.ts CHANGED
@@ -49,6 +49,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -63,9 +64,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  draggingTrackId: string | undefined;
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  volatileError: unknown;
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  afterDisplayedRegionsSetCallbacks: Function[];
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- scaleFactor: number; /**
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- * #action
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- */
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+ scaleFactor: number;
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  trackRefs: Record<string, HTMLDivElement>;
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  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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  coarseTotalBp: number;
@@ -109,10 +108,11 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  setShowCytobands(flag: boolean): void;
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  setWidth(newWidth: number): void;
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  setError(error: unknown): void;
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- toggleHeader(): void;
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- toggleHeaderOverview(): void;
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- toggleNoTracksActive(): void;
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- toggleShowGridlines(): void;
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+ setHideHeader(b: boolean): void;
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+ setHideHeaderOverview(b: boolean): void;
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+ setHideNoTracksActive(b: boolean): void;
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+ setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -126,7 +126,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  closeView(): void;
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  toggleTrack(trackId: string): boolean;
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  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
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- toggleCenterLine(): void;
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+ setShowCenterLine(b: boolean): void;
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
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  getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
package/dist/LinearSyntenyView/components/ExportSvgDialog.d.ts CHANGED
@@ -1,6 +1,6 @@
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  import React from 'react';
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  import { ExportSvgOptions } from '../model';
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- export default function ExportSvgDlg({ model, handleClose, }: {
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+ export default function ExportSvgDialog({ model, handleClose, }: {
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  model: {
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  exportSvg(opts: ExportSvgOptions): Promise<void>;
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  };
package/dist/LinearSyntenyView/components/ExportSvgDialog.js CHANGED
@@ -35,7 +35,7 @@ function LoadingMessage() {
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  function useSvgLocal(key, val) {
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  return (0, util_1.useLocalStorage)('svg-' + key, val);
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  }
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- function ExportSvgDlg({ model, handleClose, }) {
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+ function ExportSvgDialog({ model, handleClose, }) {
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  const session = (0, util_1.getSession)(model);
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  const offscreenCanvas = typeof OffscreenCanvas !== 'undefined';
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  const [rasterizeLayers, setRasterizeLayers] = (0, react_1.useState)(offscreenCanvas);
@@ -82,4 +82,4 @@ function ExportSvgDlg({ model, handleClose, }) {
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  }
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  } }, "Submit"))));
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  }
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- exports.default = ExportSvgDlg;
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+ exports.default = ExportSvgDialog;
package/dist/LinearSyntenyView/model.d.ts CHANGED
@@ -68,6 +68,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -126,10 +127,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  setShowCytobands(flag: boolean): void;
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  setWidth(newWidth: number): void;
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  setError(error: unknown): void;
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- toggleHeader(): void;
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- toggleHeaderOverview(): void;
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- toggleNoTracksActive(): void;
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- toggleShowGridlines(): void;
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+ setHideHeader(b: boolean): void;
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+ setHideHeaderOverview(b: boolean): void;
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+ setHideNoTracksActive(b: boolean): void;
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+ setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
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  scrollTo(offsetPx: number): number;
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -143,7 +145,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  closeView(): void;
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  toggleTrack(trackId: string): boolean;
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  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
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- toggleCenterLine(): void;
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+ setShowCenterLine(b: boolean): void;
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
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  getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
@@ -419,6 +421,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
419
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
420
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }>>[]): void;
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  removeView(view: {
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  id: string;
@@ -463,6 +466,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  showCytobandsSetting: boolean;
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  trackLabels: string;
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  showGridlines: boolean;
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+ highlight: (Required<import("@jbrowse/core/util").ParsedLocString> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>>) | undefined;
466
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  width: number;
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  } & {
@@ -521,10 +525,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  setShowCytobands(flag: boolean): void;
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  setWidth(newWidth: number): void;
523
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  setError(error: unknown): void;
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- toggleHeader(): void;
525
- toggleHeaderOverview(): void;
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- toggleNoTracksActive(): void;
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- toggleShowGridlines(): void;
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+ setHideHeader(b: boolean): void;
529
+ setHideHeaderOverview(b: boolean): void;
530
+ setHideNoTracksActive(b: boolean): void;
531
+ setShowGridlines(b: boolean): void;
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+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
528
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  scrollTo(offsetPx: number): number;
529
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
530
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  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -538,7 +543,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  closeView(): void;
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  toggleTrack(trackId: string): boolean;
540
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  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
541
- toggleCenterLine(): void;
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+ setShowCenterLine(b: boolean): void;
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
543
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
544
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  getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
@@ -788,6 +793,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
788
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  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
789
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  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
790
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  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
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  }, {
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  width: number;
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  } & {
@@ -846,10 +852,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  setShowCytobands(flag: boolean): void;
847
853
  setWidth(newWidth: number): void;
848
854
  setError(error: unknown): void;
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- toggleHeader(): void;
850
- toggleHeaderOverview(): void;
851
- toggleNoTracksActive(): void;
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- toggleShowGridlines(): void;
855
+ setHideHeader(b: boolean): void;
856
+ setHideHeaderOverview(b: boolean): void;
857
+ setHideNoTracksActive(b: boolean): void;
858
+ setShowGridlines(b: boolean): void;
859
+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
853
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  scrollTo(offsetPx: number): number;
854
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  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
855
862
  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -863,7 +870,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
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  closeView(): void;
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  toggleTrack(trackId: string): boolean;
865
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  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
866
- toggleCenterLine(): void;
873
+ setShowCenterLine(b: boolean): void;
867
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  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
868
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
869
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  getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
package/esm/LGVSyntenyDisplay/model.d.ts CHANGED
@@ -44,8 +44,15 @@ declare function stateModelFactory(schema: AnyConfigurationSchemaType): import("
44
44
  message: string | undefined;
45
45
  maxHeightReached: boolean;
46
46
  ReactComponent: ({ model, }: {
47
- model: any;
48
- }) => any;
47
+ model: {
48
+ error?: unknown;
49
+ reload: () => void;
50
+ message: import("react").ReactNode;
51
+ filled?: boolean | undefined;
52
+ status?: string | undefined;
53
+ reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
54
+ };
55
+ }) => import("react").JSX.Element | undefined;
49
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  renderProps: any;
50
57
  } & {
51
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  doReload(): void;
package/esm/LinearComparativeView/model.d.ts CHANGED
@@ -49,6 +49,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
49
49
  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
50
50
  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
51
51
  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
52
+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
52
53
  }, {
53
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  width: number;
54
55
  } & {
@@ -63,9 +64,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
63
64
  draggingTrackId: string | undefined;
64
65
  volatileError: unknown;
65
66
  afterDisplayedRegionsSetCallbacks: Function[];
66
- scaleFactor: number; /**
67
- * #action
68
- */
67
+ scaleFactor: number;
69
68
  trackRefs: Record<string, HTMLDivElement>;
70
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  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
71
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  coarseTotalBp: number;
@@ -109,10 +108,11 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
109
108
  setShowCytobands(flag: boolean): void;
110
109
  setWidth(newWidth: number): void;
111
110
  setError(error: unknown): void;
112
- toggleHeader(): void;
113
- toggleHeaderOverview(): void;
114
- toggleNoTracksActive(): void;
115
- toggleShowGridlines(): void;
111
+ setHideHeader(b: boolean): void;
112
+ setHideHeaderOverview(b: boolean): void;
113
+ setHideNoTracksActive(b: boolean): void;
114
+ setShowGridlines(b: boolean): void;
115
+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
116
116
  scrollTo(offsetPx: number): number;
117
117
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
118
118
  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -126,7 +126,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
126
126
  closeView(): void;
127
127
  toggleTrack(trackId: string): boolean;
128
128
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
129
- toggleCenterLine(): void;
129
+ setShowCenterLine(b: boolean): void;
130
130
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
131
131
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
132
132
  getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
package/esm/LinearSyntenyView/components/ExportSvgDialog.d.ts CHANGED
@@ -1,6 +1,6 @@
1
1
  import React from 'react';
2
2
  import { ExportSvgOptions } from '../model';
3
- export default function ExportSvgDlg({ model, handleClose, }: {
3
+ export default function ExportSvgDialog({ model, handleClose, }: {
4
4
  model: {
5
5
  exportSvg(opts: ExportSvgOptions): Promise<void>;
6
6
  };
package/esm/LinearSyntenyView/components/ExportSvgDialog.js CHANGED
@@ -10,7 +10,7 @@ function LoadingMessage() {
10
10
  function useSvgLocal(key, val) {
11
11
  return useLocalStorage('svg-' + key, val);
12
12
  }
13
- export default function ExportSvgDlg({ model, handleClose, }) {
13
+ export default function ExportSvgDialog({ model, handleClose, }) {
14
14
  const session = getSession(model);
15
15
  const offscreenCanvas = typeof OffscreenCanvas !== 'undefined';
16
16
  const [rasterizeLayers, setRasterizeLayers] = useState(offscreenCanvas);
package/esm/LinearSyntenyView/model.d.ts CHANGED
@@ -68,6 +68,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
68
68
  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
69
69
  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
70
70
  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
71
+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
71
72
  }, {
72
73
  width: number;
73
74
  } & {
@@ -126,10 +127,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
126
127
  setShowCytobands(flag: boolean): void;
127
128
  setWidth(newWidth: number): void;
128
129
  setError(error: unknown): void;
129
- toggleHeader(): void;
130
- toggleHeaderOverview(): void;
131
- toggleNoTracksActive(): void;
132
- toggleShowGridlines(): void;
130
+ setHideHeader(b: boolean): void;
131
+ setHideHeaderOverview(b: boolean): void;
132
+ setHideNoTracksActive(b: boolean): void;
133
+ setShowGridlines(b: boolean): void;
134
+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
133
135
  scrollTo(offsetPx: number): number;
134
136
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
135
137
  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -143,7 +145,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
143
145
  closeView(): void;
144
146
  toggleTrack(trackId: string): boolean;
145
147
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
146
- toggleCenterLine(): void;
148
+ setShowCenterLine(b: boolean): void;
147
149
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
148
150
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
149
151
  getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
@@ -419,6 +421,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
419
421
  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
420
422
  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
421
423
  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
424
+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
422
425
  }>>[]): void;
423
426
  removeView(view: {
424
427
  id: string;
@@ -463,6 +466,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
463
466
  showCytobandsSetting: boolean;
464
467
  trackLabels: string;
465
468
  showGridlines: boolean;
469
+ highlight: (Required<import("@jbrowse/core/util").ParsedLocString> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>>) | undefined;
466
470
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
467
471
  width: number;
468
472
  } & {
@@ -521,10 +525,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
521
525
  setShowCytobands(flag: boolean): void;
522
526
  setWidth(newWidth: number): void;
523
527
  setError(error: unknown): void;
524
- toggleHeader(): void;
525
- toggleHeaderOverview(): void;
526
- toggleNoTracksActive(): void;
527
- toggleShowGridlines(): void;
528
+ setHideHeader(b: boolean): void;
529
+ setHideHeaderOverview(b: boolean): void;
530
+ setHideNoTracksActive(b: boolean): void;
531
+ setShowGridlines(b: boolean): void;
532
+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
528
533
  scrollTo(offsetPx: number): number;
529
534
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
530
535
  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -538,7 +543,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
538
543
  closeView(): void;
539
544
  toggleTrack(trackId: string): boolean;
540
545
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
541
- toggleCenterLine(): void;
546
+ setShowCenterLine(b: boolean): void;
542
547
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
543
548
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
544
549
  getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
@@ -788,6 +793,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
788
793
  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
789
794
  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
790
795
  showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
796
+ highlight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>;
791
797
  }, {
792
798
  width: number;
793
799
  } & {
@@ -846,10 +852,11 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
846
852
  setShowCytobands(flag: boolean): void;
847
853
  setWidth(newWidth: number): void;
848
854
  setError(error: unknown): void;
849
- toggleHeader(): void;
850
- toggleHeaderOverview(): void;
851
- toggleNoTracksActive(): void;
852
- toggleShowGridlines(): void;
855
+ setHideHeader(b: boolean): void;
856
+ setHideHeaderOverview(b: boolean): void;
857
+ setHideNoTracksActive(b: boolean): void;
858
+ setShowGridlines(b: boolean): void;
859
+ setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString> | undefined): void;
853
860
  scrollTo(offsetPx: number): number;
854
861
  zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
855
862
  setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): void;
@@ -863,7 +870,7 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
863
870
  closeView(): void;
864
871
  toggleTrack(trackId: string): boolean;
865
872
  setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
866
- toggleCenterLine(): void;
873
+ setShowCenterLine(b: boolean): void;
867
874
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
868
875
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
869
876
  getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").BpOffset | undefined): {
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-linear-comparative-view",
3
- "version": "2.10.1",
3
+ "version": "2.10.3",
4
4
  "description": "JBrowse 2 linear comparative view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -61,5 +61,5 @@
61
61
  "publishConfig": {
62
62
  "access": "public"
63
63
  },
64
- "gitHead": "442b5f87efddfdf4ccf520b4d9dd01ddd370cb07"
64
+ "gitHead": "c8fc800cd17decd72b2e971c7a6add3b95214e72"
65
65
  }