@jbrowse/plugin-legacy-jbrowse 5.0.0-beta.17 → 5.0.0-beta.19

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Files changed (4) hide show
  1. package/esm/JBrowse1Connection/jb1ToJb2.js +1 -1
  2. package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.d.ts +1 -1
  3. package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js +1 -1
  4. package/package.json +5 -5
package/esm/JBrowse1Connection/jb1ToJb2.js CHANGED
@@ -47,7 +47,7 @@ const NO_ADAPTER = {
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  */
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  function wiggleDisplays(jb1TrackConfig, jb2TrackConfig) {
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  const mark = jb1TrackConfig.type?.endsWith('Density')
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- ? 'span'
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+ ? 'rect'
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  : jb1TrackConfig.type?.endsWith('XYPlot')
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  ? 'bar'
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  : undefined;
package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.d.ts CHANGED
@@ -9,7 +9,7 @@ interface SearchResults {
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  prefix: ({
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  name: string;
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  } | string)[];
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- exact: [string, number, string, string, number, number][];
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+ exact: [string, number, string, string, number | string, number | string][];
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  }
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  type IndexFile = Record<string, SearchResults>;
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  export default class JBrowse1TextSearchAdapter extends BaseAdapter implements BaseTextSearchAdapter {
package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js CHANGED
@@ -39,7 +39,7 @@ export default class JBrowse1TextSearchAdapter extends BaseAdapter {
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  // matched it exactly — which is what lets a caller ask once rather than
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  // asking for exact hits and then for all of them
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  ...results.exact.map(([name, trackIndex, , refName, start, end]) => new BaseResult({
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- locString: `${refName || name}:${start}-${end}`,
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+ locString: `${refName || name}:${Number(start) + 1}-${end}`,
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  label: name,
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  trackId: tracks[trackIndex],
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  exact: true,
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-legacy-jbrowse",
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- "version": "5.0.0-beta.17",
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+ "version": "5.0.0-beta.19",
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  "type": "module",
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  "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data",
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  "keywords": [
@@ -22,12 +22,12 @@
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  ],
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  "dependencies": {
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  "@gmod/nclist": "^3.0.15",
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- "@jbrowse/mobx-state-tree": "^6.9.0",
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+ "@jbrowse/mobx-state-tree": "^6.10.0",
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  "generic-filehandle2": "^2.5.1",
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- "mobx": "^7.0.6",
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+ "mobx": "^7.1.3",
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  "rxjs": "^7.8.2",
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- "@jbrowse/add-track-core": "^5.0.0-beta.17",
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- "@jbrowse/core": "^5.0.0-beta.17"
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+ "@jbrowse/add-track-core": "^5.0.0-beta.19",
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+ "@jbrowse/core": "^5.0.0-beta.19"
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  },
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  "peerDependencies": {
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  "react": ">=19.0.0",