@jbrowse/plugin-legacy-jbrowse 3.6.5 → 4.0.0

package/dist/JBrowse1Connection/util.js

@@ -1,86 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.isTrack = isTrack;
-exports.isSource = isSource;
-exports.deepUpdate = deepUpdate;
-exports.fillTemplate = fillTemplate;
-exports.structuredClone = structuredClone;
-const get_value_1 = __importDefault(require("get-value"));
-function isTrack(arg) {
-    return (arg === null || arg === void 0 ? void 0 : arg.label) && typeof arg.label === 'string';
-}
-function isSource(arg) {
-    return (arg === null || arg === void 0 ? void 0 : arg.url) && typeof arg.url === 'string';
-}
-function deepUpdate(a, b) {
-    for (const prop of Object.keys(b)) {
-        if (prop in a &&
-            typeof b[prop] === 'object' &&
-            typeof a[prop] === 'object') {
-            deepUpdate(a[prop], b[prop]);
-        }
-        else if (a[prop] === undefined || b[prop] !== undefined) {
-            a[prop] = b[prop];
-        }
-    }
-    return a;
-}
-function fillTemplate(template, fillWith) {
-    return template.replaceAll(/{([\s\w.]+)}/g, (match, varName) => {
-        varName = varName.replaceAll(/\s+/g, '');
-        const fill = (0, get_value_1.default)(fillWith, varName);
-        if (fill !== undefined) {
-            return typeof fill === 'function' ? fill(varName) : fill;
-        }
-        if (fillWith.callback) {
-            const v = fillWith.callback.call(this, varName);
-            if (v !== undefined) {
-                return v;
-            }
-        }
-        return match;
-    });
-}
-function structuredClone(src) {
-    if (!src ||
-        typeof src !== 'object' ||
-        Object.prototype.toString.call(src) === '[object Function]') {
-        return src;
-    }
-    if (src.nodeType && 'cloneNode' in src) {
-        return src.cloneNode(true);
-    }
-    if (src instanceof Date) {
-        return new Date(src);
-    }
-    if (src instanceof RegExp) {
-        return new RegExp(src);
-    }
-    let r;
-    if (Array.isArray(src)) {
-        r = [];
-        for (let i = 0, l = src.length; i < l; ++i) {
-            if (i in src) {
-                r[i] = structuredClone(src[i]);
-            }
-        }
-    }
-    else {
-        r = src.constructor ? new src.constructor() : {};
-    }
-    return mixin(r, src, a => structuredClone(a));
-}
-function mixin(dest, source, copyFunc) {
-    const empty = {};
-    for (const name in source) {
-        const s = source[name];
-        if (!(name in dest) ||
-            (dest[name] !== s && (!(name in empty) || empty[name] !== s))) {
-            dest[name] = copyFunc ? copyFunc(s) : s;
-        }
-    }
-    return dest;
-}

package/dist/JBrowse1TextSearchAdapter/HttpMap.d.ts

@@ -1,19 +0,0 @@
-export default class HttpMap {
-    url: string;
-    constructor(args: {
-        url: string;
-    });
-    readMeta(): Promise<{
-        hashHexCharacters: number;
-        compress: any;
-        tracks: any;
-    }>;
-    getHashHexCharacters(): Promise<number>;
-    getCompress(): Promise<any>;
-    getTrackNames(): Promise<any>;
-    get(key: string): Promise<any>;
-    getBucket(key: string): Promise<any>;
-    loadFile(id: string): Promise<any>;
-    hexToDirPath(hex: string): Promise<string>;
-    hash(data: string): string;
-}

package/dist/JBrowse1TextSearchAdapter/HttpMap.js

@@ -1,65 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const crc32_1 = __importDefault(require("crc/crc32"));
-class HttpMap {
-    constructor(args) {
-        this.url = args.url.endsWith('/') ? args.url : `${args.url}/`;
-    }
-    async readMeta() {
-        const meta = await this.loadFile('meta.json');
-        const { compress, track_names: tracks } = meta;
-        const hashHexCharacters = Math.ceil(meta.hash_bits / 4);
-        return { hashHexCharacters, compress, tracks };
-    }
-    async getHashHexCharacters() {
-        const meta = await this.readMeta();
-        return meta.hashHexCharacters;
-    }
-    async getCompress() {
-        const meta = await this.readMeta();
-        return meta.compress;
-    }
-    async getTrackNames() {
-        const meta = await this.readMeta();
-        return meta.tracks;
-    }
-    async get(key) {
-        const bucket = await this.getBucket(key);
-        return bucket[key];
-    }
-    async getBucket(key) {
-        const bucketIdent = this.hash(key);
-        const hexToDirPath = await this.hexToDirPath(bucketIdent);
-        return this.loadFile(hexToDirPath);
-    }
-    async loadFile(id) {
-        const response = await fetch(`${this.url}${id}`);
-        if (!response.ok) {
-            throw new Error(`HTTP ${response.status} ${response.statusText}`);
-        }
-        return response.json();
-    }
-    async hexToDirPath(hex) {
-        const hashHexCharacters = await this.getHashHexCharacters();
-        if (hashHexCharacters) {
-            const compress = await this.getCompress();
-            while (hex.length < 8) {
-                hex = `0${hex}`;
-            }
-            hex = hex.slice(8 - hashHexCharacters);
-            const dirpath = [];
-            for (let i = 0; i < hex.length; i += 3) {
-                dirpath.push(hex.slice(i, i + 3));
-            }
-            return `${dirpath.join('/')}.json${compress ? 'z' : ''}`;
-        }
-        return '';
-    }
-    hash(data) {
-        return (0, crc32_1.default)(data).toString(16).toLowerCase().replace('-', 'n');
-    }
-}
-exports.default = HttpMap;

package/dist/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.d.ts

@@ -1,28 +0,0 @@
-import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import HttpMap from './HttpMap';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { BaseTextSearchAdapter, BaseTextSearchArgs } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export interface TooManyHits {
-    name: string;
-    hitLimit: number;
-}
-interface SearchResults {
-    prefix: ({
-        name: string;
-    } | string)[];
-    exact: [string, number, string, string, number, number][];
-}
-export type NamesIndexRecord = string | (string | number)[];
-type IndexFile = Record<string, SearchResults>;
-export default class JBrowse1TextSearchAdapter extends BaseAdapter implements BaseTextSearchAdapter {
-    httpMap: HttpMap;
-    tracksNames?: string[];
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    loadIndexFile(query: string): Promise<IndexFile>;
-    searchIndex(args: BaseTextSearchArgs): Promise<BaseResult[]>;
-    formatResults(results: SearchResults, tracks: string[], searchType?: string): BaseResult[];
-}
-export {};

package/dist/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js

@@ -1,58 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
-const configuration_1 = require("@jbrowse/core/configuration");
-const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
-const HttpMap_1 = __importDefault(require("./HttpMap"));
-class JBrowse1TextSearchAdapter extends BaseAdapter_1.BaseAdapter {
-    constructor(config, getSubAdapter, pluginManager) {
-        super(config, getSubAdapter, pluginManager);
-        const namesIndex = (0, configuration_1.readConfObject)(config, 'namesIndexLocation');
-        const { baseUri, uri } = namesIndex;
-        this.httpMap = new HttpMap_1.default({
-            url: baseUri ? new URL(uri, baseUri).href : uri,
-        });
-    }
-    async loadIndexFile(query) {
-        return this.httpMap.getBucket(query);
-    }
-    async searchIndex(args) {
-        const { searchType, queryString } = args;
-        const tracks = this.tracksNames || (await this.httpMap.getTrackNames());
-        const str = queryString.toLowerCase();
-        const entries = await this.loadIndexFile(str);
-        return entries[str]
-            ? this.formatResults(entries[str], tracks, searchType)
-            : [];
-    }
-    formatResults(results, tracks, searchType) {
-        return [
-            ...(searchType === 'exact'
-                ? []
-                : results.prefix.map(result => new BaseResults_1.default({
-                    label: typeof result === 'object' ? result.name : result,
-                    matchedAttribute: 'name',
-                    matchedObject: { result: result },
-                }))),
-            ...results.exact.map(result => {
-                const name = result[0];
-                const trackIndex = result[1];
-                const refName = result[3];
-                const start = result[4];
-                const end = result[5];
-                const locstring = `${refName || name}:${start}-${end}`;
-                return new BaseResults_1.default({
-                    locString: locstring,
-                    label: name,
-                    matchedAttribute: 'name',
-                    matchedObject: result,
-                    trackId: tracks[trackIndex],
-                });
-            }),
-        ].filter(result => result.getLabel() !== 'too many matches');
-    }
-}
-exports.default = JBrowse1TextSearchAdapter;

package/dist/JBrowse1TextSearchAdapter/configSchema.d.ts

@@ -1,21 +0,0 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    namesIndexLocation: {
-        type: string;
-        defaultValue: {
-            uri: string;
-            locationType: string;
-        };
-        description: string;
-    };
-    tracks: {
-        type: string;
-        defaultValue: never[];
-        description: string;
-    };
-    assemblyNames: {
-        type: string;
-        defaultValue: never[];
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "textSearchAdapterId">>;
-export default _default;

package/dist/JBrowse1TextSearchAdapter/configSchema.js

@@ -1,24 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-exports.default = (0, configuration_1.ConfigurationSchema)('JBrowse1TextSearchAdapter', {
-    namesIndexLocation: {
-        type: 'fileLocation',
-        defaultValue: { uri: '/volvox/names', locationType: 'UriLocation' },
-        description: 'the location of the JBrowse1 names index data directory',
-    },
-    tracks: {
-        type: 'stringArray',
-        defaultValue: [],
-        description: 'List of tracks covered by text search adapter',
-    },
-    assemblyNames: {
-        type: 'stringArray',
-        defaultValue: [],
-        description: 'List of assemblies covered by text search adapter',
-    },
-}, {
-    explicitlyTyped: true,
-    explicitIdentifier: 'textSearchAdapterId',
-});

package/dist/JBrowse1TextSearchAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function JBrowse1TextSearchAdapterF(pluginManager: PluginManager): void;

package/dist/JBrowse1TextSearchAdapter/index.js

@@ -1,49 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = JBrowse1TextSearchAdapterF;
-const TextSearchAdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TextSearchAdapterType"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function JBrowse1TextSearchAdapterF(pluginManager) {
-    pluginManager.addTextSearchAdapterType(() => new TextSearchAdapterType_1.default({
-        name: 'JBrowse1TextSearchAdapter',
-        configSchema: configSchema_1.default,
-        description: 'A JBrowse 1 text search adapter',
-        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./JBrowse1TextSearchAdapter'))).then(t => t.default),
-    }));
-}

package/dist/NCListAdapter/NCListAdapter.d.ts

@@ -1,17 +0,0 @@
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import NCListFeature from './NCListFeature';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-import type { Feature } from '@jbrowse/core/util/simpleFeature';
-import type { Region } from '@jbrowse/core/util/types';
-export default class NCListAdapter extends BaseFeatureDataAdapter {
-    private nclist;
-    private configRefNames?;
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getFeatures(region: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
-    wrapFeature(ncFeature: any): NCListFeature;
-    hasDataForRefName(refName: string): Promise<boolean>;
-    getRefNames(): Promise<string[]>;
-}

package/dist/NCListAdapter/NCListAdapter.js

@@ -1,48 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const nclist_1 = __importDefault(require("@gmod/nclist"));
-const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
-const rxjs_1 = require("@jbrowse/core/util/rxjs");
-const stopToken_1 = require("@jbrowse/core/util/stopToken");
-const generic_filehandle2_1 = require("generic-filehandle2");
-const NCListFeature_1 = __importDefault(require("./NCListFeature"));
-class NCListAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
-    constructor(config, getSubAdapter, pluginManager) {
-        super(config, getSubAdapter, pluginManager);
-        const refNames = this.getConf('refNames');
-        const rootUrlTemplate = this.getConf('rootUrlTemplate');
-        this.configRefNames = refNames;
-        this.nclist = new nclist_1.default({
-            baseUrl: '',
-            urlTemplate: rootUrlTemplate.uri,
-            readFile: (url) => new generic_filehandle2_1.RemoteFile(String(rootUrlTemplate.baseUri
-                ? new URL(url, rootUrlTemplate.baseUri).toString()
-                : url)).readFile(),
-        });
-    }
-    getFeatures(region, opts = {}) {
-        return (0, rxjs_1.ObservableCreate)(async (observer) => {
-            const { stopToken } = opts;
-            for await (const feature of this.nclist.getFeatures(region, opts)) {
-                (0, stopToken_1.checkStopToken)(stopToken);
-                observer.next(this.wrapFeature(feature));
-            }
-            observer.complete();
-        });
-    }
-    wrapFeature(ncFeature) {
-        return new NCListFeature_1.default(ncFeature, undefined, `${this.id}-${ncFeature.id()}`);
-    }
-    async hasDataForRefName(refName) {
-        var _a;
-        const root = await this.nclist.getDataRoot(refName);
-        return !!((_a = root === null || root === void 0 ? void 0 : root.stats) === null || _a === void 0 ? void 0 : _a.featureCount);
-    }
-    async getRefNames() {
-        return this.configRefNames || [];
-    }
-}
-exports.default = NCListAdapter;

package/dist/NCListAdapter/NCListFeature.d.ts

@@ -1,16 +0,0 @@
-import type { Feature, SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
-export default class NCListFeature implements Feature {
-    private ncFeature;
-    private parentHandle?;
-    private uniqueId;
-    constructor(ncFeature: any, parent?: Feature, id?: string);
-    set(): void;
-    jb2TagToJb1Tag(tag: string): string;
-    jb1TagToJb2Tag(tag: string): string;
-    get(attrName: string): any;
-    tags(): string[];
-    id(): string;
-    parent(): Feature | undefined;
-    children(): Feature[] | undefined;
-    toJSON(): SimpleFeatureSerialized;
-}

package/dist/NCListAdapter/NCListFeature.js

@@ -1,58 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jb2ToJb1 = { refName: 'seq_id' };
-const jb1ToJb2 = { seq_id: 'refName' };
-class NCListFeature {
-    constructor(ncFeature, parent, id) {
-        this.ncFeature = ncFeature;
-        this.uniqueId = id || ncFeature.id();
-        this.parentHandle = parent;
-    }
-    set() {
-        throw new Error('not implemented');
-    }
-    jb2TagToJb1Tag(tag) {
-        const mapped = jb2ToJb1[tag] || tag;
-        return mapped.toLowerCase();
-    }
-    jb1TagToJb2Tag(tag) {
-        const t = tag.toLowerCase();
-        return jb1ToJb2[t] || t;
-    }
-    get(attrName) {
-        const attr = this.ncFeature.get(this.jb2TagToJb1Tag(attrName));
-        if (attr && attrName === 'subfeatures') {
-            return attr.map((subfeature) => new NCListFeature(subfeature, this));
-        }
-        return attr;
-    }
-    tags() {
-        return this.ncFeature.tags().map((t) => this.jb1TagToJb2Tag(t));
-    }
-    id() {
-        return this.uniqueId;
-    }
-    parent() {
-        return this.parentHandle;
-    }
-    children() {
-        return this.get('subfeatures');
-    }
-    toJSON() {
-        const data = { uniqueId: this.id() };
-        for (const tag of this.ncFeature.tags()) {
-            const mappedTag = this.jb1TagToJb2Tag(tag);
-            const value = this.ncFeature.get(tag);
-            if (mappedTag === 'subfeatures') {
-                data.subfeatures = (value || []).map((f) => {
-                    return new NCListFeature(f, this).toJSON();
-                });
-            }
-            else {
-                data[mappedTag] = value;
-            }
-        }
-        return data;
-    }
-}
-exports.default = NCListFeature;

package/dist/NCListAdapter/configSchema.d.ts

@@ -1,15 +0,0 @@
-declare const NCListAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    rootUrlTemplate: {
-        type: string;
-        defaultValue: {
-            uri: string;
-            locationType: string;
-        };
-    };
-    refNames: {
-        type: string;
-        defaultValue: never[];
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default NCListAdapter;

package/dist/NCListAdapter/configSchema.js

@@ -1,21 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-const NCListAdapter = (0, configuration_1.ConfigurationSchema)('NCListAdapter', {
-    rootUrlTemplate: {
-        type: 'fileLocation',
-        defaultValue: {
-            uri: '/path/to/my/{refseq}/trackData.json',
-            locationType: 'UriLocation',
-        },
-    },
-    refNames: {
-        type: 'stringArray',
-        defaultValue: [],
-        description: 'List of refNames used by the NCList used for aliasing',
-    },
-}, {
-    explicitlyTyped: true,
-});
-exports.default = NCListAdapter;

package/dist/NCListAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function NCListAdapterF(pluginManager: PluginManager): void;

package/dist/NCListAdapter/index.js

@@ -1,52 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = NCListAdapterF;
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const configSchema_1 = __importDefault(require("./configSchema"));
-function NCListAdapterF(pluginManager) {
-    pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
-        name: 'NCListAdapter',
-        displayName: 'NCList adapter',
-        configSchema: configSchema_1.default,
-        adapterMetadata: {
-            category: 'Uncommon',
-        },
-        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./NCListAdapter'))).then(r => r.default),
-    }));
-}

package/dist/index.d.ts

@@ -1,6 +0,0 @@
-import Plugin from '@jbrowse/core/Plugin';
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default class LegacyJBrowsePlugin extends Plugin {
-    name: string;
-    install(pluginManager: PluginManager): void;
-}

package/dist/index.js

@@ -1,23 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
-const GuessNCList_1 = __importDefault(require("./GuessNCList"));
-const JBrowse1Connection_1 = __importDefault(require("./JBrowse1Connection"));
-const JBrowse1TextSearchAdapter_1 = __importDefault(require("./JBrowse1TextSearchAdapter"));
-const NCListAdapter_1 = __importDefault(require("./NCListAdapter"));
-class LegacyJBrowsePlugin extends Plugin_1.default {
-    constructor() {
-        super(...arguments);
-        this.name = 'LegacyJBrowsePlugin';
-    }
-    install(pluginManager) {
-        (0, NCListAdapter_1.default)(pluginManager);
-        (0, GuessNCList_1.default)(pluginManager);
-        (0, JBrowse1TextSearchAdapter_1.default)(pluginManager);
-        (0, JBrowse1Connection_1.default)(pluginManager);
-    }
-}
-exports.default = LegacyJBrowsePlugin;