@jbrowse/plugin-legacy-jbrowse 3.1.0 → 3.3.0

package/dist/JBrowse1Connection/jb1ConfigLoad.js

@@ -130,11 +130,11 @@ function mergeTrackConfigs(a, b) {
         return a;
     }
     const aTracks = {};
-    a.forEach((t, i) => {
+    for (const [i, t] of a.entries()) {
         t.index = i;
         aTracks[t.label] = t;
-    });
-    b.forEach((bT) => {
+    }
+    for (const bT of b) {
         const aT = aTracks[bT.label];
         if (aT) {
             mergeConfigs(aT, bT);
@@ -142,7 +142,7 @@ function mergeTrackConfigs(a, b) {
         else {
             a.push(bT);
         }
-    });
+    }
     return a;
 }
 async function loadIncludes(inputConfig) {
@@ -167,9 +167,9 @@ async function loadIncludes(inputConfig) {
             return loadRecur(includedData, newUpstreamConf);
         });
         const includedDataObjects = await Promise.all(loads);
-        includedDataObjects.forEach((includedData) => {
+        for (const includedData of includedDataObjects) {
             config = mergeConfigs(config, includedData) || config;
-        });
+        }
         return config;
     }
     return loadRecur(inputConfig, {});

package/dist/JBrowse1Connection/jb1ConfigParse.js

@@ -90,7 +90,7 @@ function parse(text, url) {
             }
         }
     }
-    text.split(/\n|\r\n|\r/).forEach((textLine, i) => {
+    for (const [i, textLine] of text.split(/\n|\r\n|\r/).entries()) {
         lineNumber = i + 1;
         const line = textLine.replace(/^\s*#.+/, '');
         let match;
@@ -127,7 +127,7 @@ function parse(text, url) {
             keyPath = undefined;
             value = undefined;
         }
-    });
+    }
     recordVal();
     return data;
 }
@@ -200,11 +200,11 @@ function regularizeConf(conf, url) {
         if (conf.names) {
             addBase.push(conf.names);
         }
-        addBase.forEach((t) => {
+        for (const t of addBase) {
             if (!t.baseUrl) {
                 t.baseUrl = conf.baseUrl || '/';
             }
-        });
+        }
         if (conf.refSeqs && typeof conf.refSeqs === 'string') {
             conf.refSeqs = new URL(conf.refSeqs, conf.sourceUrl).href;
         }
@@ -213,14 +213,14 @@ function regularizeConf(conf, url) {
         }
     }
     conf.stores = conf.stores || {};
-    (conf.tracks || []).forEach((trackConfig) => {
+    for (let trackConfig of conf.tracks || []) {
         if (trackConfig.config) {
             const c = trackConfig.config;
             trackConfig.config = undefined;
             trackConfig = { ...c, ...trackConfig };
         }
         if (trackConfig.store) {
-            return;
+            continue;
         }
         let trackClassName;
         if (trackConfig.type === 'FeatureTrack') {
@@ -246,7 +246,7 @@ function regularizeConf(conf, url) {
             }
             synthesizeTrackStoreConfig(conf, trackConfig.histograms);
         }
-    });
+    }
     return conf;
 }
 function regularizeClass(root, className) {

package/dist/NCListAdapter/NCListFeature.js

@@ -40,7 +40,7 @@ class NCListFeature {
     }
     toJSON() {
         const data = { uniqueId: this.id() };
-        this.ncFeature.tags().forEach((tag) => {
+        for (const tag of this.ncFeature.tags()) {
             const mappedTag = this.jb1TagToJb2Tag(tag);
             const value = this.ncFeature.get(tag);
             if (mappedTag === 'subfeatures') {
@@ -51,7 +51,7 @@ class NCListFeature {
             else {
                 data[mappedTag] = value;
             }
-        });
+        }
         return data;
     }
 }

package/esm/JBrowse1Connection/jb1ConfigLoad.js

@@ -124,11 +124,11 @@ function mergeTrackConfigs(a, b) {
         return a;
     }
     const aTracks = {};
-    a.forEach((t, i) => {
+    for (const [i, t] of a.entries()) {
         t.index = i;
         aTracks[t.label] = t;
-    });
-    b.forEach((bT) => {
+    }
+    for (const bT of b) {
         const aT = aTracks[bT.label];
         if (aT) {
             mergeConfigs(aT, bT);
@@ -136,7 +136,7 @@ function mergeTrackConfigs(a, b) {
         else {
             a.push(bT);
         }
-    });
+    }
     return a;
 }
 async function loadIncludes(inputConfig) {
@@ -161,9 +161,9 @@ async function loadIncludes(inputConfig) {
             return loadRecur(includedData, newUpstreamConf);
         });
         const includedDataObjects = await Promise.all(loads);
-        includedDataObjects.forEach((includedData) => {
+        for (const includedData of includedDataObjects) {
             config = mergeConfigs(config, includedData) || config;
-        });
+        }
         return config;
     }
     return loadRecur(inputConfig, {});

package/esm/JBrowse1Connection/jb1ConfigParse.js

@@ -82,7 +82,7 @@ function parse(text, url) {
             }
         }
     }
-    text.split(/\n|\r\n|\r/).forEach((textLine, i) => {
+    for (const [i, textLine] of text.split(/\n|\r\n|\r/).entries()) {
         lineNumber = i + 1;
         const line = textLine.replace(/^\s*#.+/, '');
         let match;
@@ -119,7 +119,7 @@ function parse(text, url) {
             keyPath = undefined;
             value = undefined;
         }
-    });
+    }
     recordVal();
     return data;
 }
@@ -192,11 +192,11 @@ export function regularizeConf(conf, url) {
         if (conf.names) {
             addBase.push(conf.names);
         }
-        addBase.forEach((t) => {
+        for (const t of addBase) {
             if (!t.baseUrl) {
                 t.baseUrl = conf.baseUrl || '/';
             }
-        });
+        }
         if (conf.refSeqs && typeof conf.refSeqs === 'string') {
             conf.refSeqs = new URL(conf.refSeqs, conf.sourceUrl).href;
         }
@@ -205,14 +205,14 @@ export function regularizeConf(conf, url) {
         }
     }
     conf.stores = conf.stores || {};
-    (conf.tracks || []).forEach((trackConfig) => {
+    for (let trackConfig of conf.tracks || []) {
         if (trackConfig.config) {
             const c = trackConfig.config;
             trackConfig.config = undefined;
             trackConfig = { ...c, ...trackConfig };
         }
         if (trackConfig.store) {
-            return;
+            continue;
         }
         let trackClassName;
         if (trackConfig.type === 'FeatureTrack') {
@@ -238,7 +238,7 @@ export function regularizeConf(conf, url) {
             }
             synthesizeTrackStoreConfig(conf, trackConfig.histograms);
         }
-    });
+    }
     return conf;
 }
 function regularizeClass(root, className) {

package/esm/NCListAdapter/NCListFeature.js

@@ -38,7 +38,7 @@ export default class NCListFeature {
     }
     toJSON() {
         const data = { uniqueId: this.id() };
-        this.ncFeature.tags().forEach((tag) => {
+        for (const tag of this.ncFeature.tags()) {
             const mappedTag = this.jb1TagToJb2Tag(tag);
             const value = this.ncFeature.get(tag);
             if (mappedTag === 'subfeatures') {
@@ -49,7 +49,7 @@ export default class NCListFeature {
             else {
                 data[mappedTag] = value;
             }
-        });
+        }
         return data;
     }
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-legacy-jbrowse",
-  "version": "3.1.0",
+  "version": "3.3.0",
   "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data",
   "keywords": [
     "jbrowse",
@@ -37,7 +37,7 @@
   },
   "dependencies": {
     "@gmod/nclist": "^2.0.0",
-    "@jbrowse/core": "^3.1.0",
+    "@jbrowse/core": "^3.3.0",
     "crc": "^4.0.0",
     "generic-filehandle2": "^1.0.0",
     "get-value": "^3.0.0",
@@ -53,5 +53,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "91492049ddea0aed90eb24d3c066c2d9f5a6b189"
+  "gitHead": "0bb64d8cc7ecdd167515308b31eec3d9acbc59e4"
 }