@jbrowse/plugin-legacy-jbrowse 2.6.1 → 2.6.2

package/src/NCListAdapter/configSchema.ts

@@ -1,32 +0,0 @@
-import { ConfigurationSchema } from '@jbrowse/core/configuration'
-
-/**
- * #config NCListAdapter
- */
-function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
-
-const NCListAdapter = ConfigurationSchema(
-  'NCListAdapter',
-  {
-    /**
-     * #slot
-     */
-    rootUrlTemplate: {
-      type: 'fileLocation',
-      defaultValue: {
-        uri: '/path/to/my/{refseq}/trackData.json',
-        locationType: 'UriLocation',
-      },
-    },
-    /**
-     * #slot
-     */
-    refNames: {
-      type: 'stringArray',
-      defaultValue: [],
-      description: 'List of refNames used by the NCList used for aliasing',
-    },
-  },
-  { explicitlyTyped: true },
-)
-export default NCListAdapter

package/src/NCListAdapter/index.ts

@@ -1,16 +0,0 @@
-import { AdapterType } from '@jbrowse/core/pluggableElementTypes'
-import PluginManager from '@jbrowse/core/PluginManager'
-
-import configSchema from './configSchema'
-
-export default (pluginManager: PluginManager) => {
-  pluginManager.addAdapterType(
-    () =>
-      new AdapterType({
-        name: 'NCListAdapter',
-        displayName: 'NCList adapter',
-        configSchema,
-        getAdapterClass: () => import('./NCListAdapter').then(r => r.default),
-      }),
-  )
-}

package/src/__snapshots__/index.test.ts.snap

@@ -1,16 +0,0 @@
-// Jest Snapshot v1, https://goo.gl/fbAQLP
-
-exports[`plugin in a stock JBrowse 1`] = `{}`;
-
-exports[`test creating a text search adapter 1`] = `
-{
-  "namesIndexLocation": {
-    "internetAccountId": undefined,
-    "internetAccountPreAuthorization": undefined,
-    "locationType": "UriLocation",
-    "uri": "names/",
-  },
-  "textSearchAdapterId": "JBrowse1GenerateNamesAdapterTest",
-  "type": "JBrowse1TextSearchAdapter",
-}
-`;

package/src/index.test.ts

@@ -1,35 +0,0 @@
-import PluginManager from '@jbrowse/core/PluginManager'
-import { getSnapshot } from 'mobx-state-tree'
-import ThisPlugin from '.'
-
-test('plugin in a stock JBrowse', () => {
-  const pm = new PluginManager([new ThisPlugin()])
-  pm.createPluggableElements()
-  pm.configure()
-  expect(() => pm.addPlugin(new ThisPlugin())).toThrow(
-    /JBrowse already configured, cannot add plugins/,
-  )
-
-  const NCListAdapter = pm.getAdapterType('NCListAdapter')
-  const config = NCListAdapter.configSchema.create({ type: 'NCListAdapter' })
-  expect(getSnapshot(config)).toMatchSnapshot()
-})
-
-test('test creating a text search adapter', () => {
-  const pm = new PluginManager([new ThisPlugin()])
-  pm.createPluggableElements()
-  pm.configure()
-
-  const Adapter = pm.getTextSearchAdapterType('JBrowse1TextSearchAdapter')
-  const config = Adapter.configSchema.create({
-    type: 'JBrowse1TextSearchAdapter',
-    textSearchAdapterId: 'JBrowse1GenerateNamesAdapterTest',
-    namesIndexLocation: {
-      uri: 'names/',
-      locationType: 'UriLocation',
-    },
-    tracks: [],
-    assemblies: [],
-  })
-  expect(getSnapshot(config)).toMatchSnapshot()
-})

package/src/index.ts

@@ -1,17 +0,0 @@
-import Plugin from '@jbrowse/core/Plugin'
-import PluginManager from '@jbrowse/core/PluginManager'
-import NCListAdapterF from './NCListAdapter'
-import JBrowse1TextSearchAdapterF from './JBrowse1TextSearchAdapter'
-import JBrowse1ConnectionF from './JBrowse1Connection'
-import GuessNCListF from './GuessNCList'
-
-export default class LegacyJBrowsePlugin extends Plugin {
-  name = 'LegacyJBrowsePlugin'
-
-  install(pluginManager: PluginManager) {
-    NCListAdapterF(pluginManager)
-    GuessNCListF(pluginManager)
-    JBrowse1TextSearchAdapterF(pluginManager)
-    JBrowse1ConnectionF(pluginManager)
-  }
-}