@jbrowse/plugin-legacy-jbrowse 2.5.0 → 2.6.2

package/dist/GuessNCList/index.js

@@ -17,4 +17,3 @@ exports.default = (pluginManager) => {
         };
     });
 };
-//# sourceMappingURL=index.js.map

package/dist/JBrowse1Connection/configSchema.js

@@ -33,4 +33,3 @@ const JBrowse1Connection = (0, configuration_1.ConfigurationSchema)('JBrowse1Con
     baseConfiguration: models_1.baseConnectionConfig,
 });
 exports.default = JBrowse1Connection;
-//# sourceMappingURL=configSchema.js.map

package/dist/JBrowse1Connection/index.js

@@ -17,4 +17,3 @@ exports.default = (pluginManager) => {
         url: '//jbrowse.org/',
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/JBrowse1Connection/jb1ConfigLoad.js

@@ -291,4 +291,3 @@ function validateConfig(config) {
         throw new Error('Must provide a `baseUrl` in configuration');
     }
 }
-//# sourceMappingURL=jb1ConfigLoad.js.map

package/dist/JBrowse1Connection/jb1ConfigParse.js

@@ -58,7 +58,7 @@ function parse(text, url) {
                 }
                 // parse numbers if it looks numeric
                 else if (/^[+-]?[\d.,]+([eE][-+]?\d+)?$/.test(value)) {
-                    parsedValue = parseFloat(value.replace(/,/g, ''));
+                    parsedValue = parseFloat(value.replaceAll(',', ''));
                 }
                 else {
                     parsedValue = value;
@@ -377,4 +377,3 @@ function synthesizeTrackStoreConfig(mainConf, trackConfig) {
     // connect it to the track conf
     trackConfig.store = storeConf.name;
 }
-//# sourceMappingURL=jb1ConfigParse.js.map

package/dist/JBrowse1Connection/jb1ToJb2.js

@@ -28,8 +28,8 @@ function convertTrackConfig(jb1TrackConfig, dataRoot, sequenceAdapter) {
     }
     const resolveUrlTemplate = (urlTemplate) => {
         return new URL(urlTemplate, `${dataRoot}/`).href
-            .replace(/%7B/gi, '{')
-            .replace(/%7D/gi, '}');
+            .replaceAll(/%7B/gi, '{')
+            .replaceAll(/%7D/gi, '}');
     };
     const urlTemplate = resolveUrlTemplate(jb1TrackConfig.urlTemplate);
     if (storeClass) {
@@ -414,4 +414,3 @@ function refSeqAdapterFromConfig(refSeqsData) {
         features,
     };
 }
-//# sourceMappingURL=jb1ToJb2.js.map

package/dist/JBrowse1Connection/model.d.ts

@@ -2,6 +2,18 @@ import PluginManager from '@jbrowse/core/PluginManager';
 export default function (pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     name: import("mobx-state-tree").ISimpleType<string>;
     tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        name: {
+            type: string;
+            defaultValue: string;
+            description: string;
+        };
+        assemblyNames: {
+            type: string;
+            defaultValue: never[];
+            description: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
 } & {
     configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         dataDirLocation: {
@@ -49,5 +61,5 @@ export default function (pluginManager: PluginManager): import("mobx-state-tree"
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
     clear(): void;
 } & {
-    connect(): void;
+    connect(): Promise<void>;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/JBrowse1Connection/model.js

@@ -1,4 +1,27 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
@@ -7,9 +30,8 @@ const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
 const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const mobx_state_tree_1 = require("mobx-state-tree");
+// locals
 const configSchema_1 = __importDefault(require("./configSchema"));
-const jb1ConfigLoad_1 = require("./jb1ConfigLoad");
-const jb1ToJb2_1 = require("./jb1ToJb2");
 function default_1(pluginManager) {
     return mobx_state_tree_1.types
         .compose('JBrowse1Connection', (0, models_1.BaseConnectionModelFactory)(pluginManager), mobx_state_tree_1.types.model({
@@ -17,17 +39,19 @@ function default_1(pluginManager) {
         type: mobx_state_tree_1.types.literal('JBrowse1Connection'),
     }))
         .actions(self => ({
-        connect() {
-            const dataDirLocation = (0, configuration_1.readConfObject)(self.configuration, 'dataDirLocation');
+        async connect() {
+            var _a;
             const session = (0, util_1.getSession)(self);
-            (0, jb1ConfigLoad_1.fetchJb1)(dataDirLocation)
-                .then(config => {
-                var _a;
-                const assemblyName = (0, configuration_1.readConfObject)(self.configuration, 'assemblyNames')[0];
+            try {
+                const dataDirLocation = (0, configuration_1.getConf)(self, 'dataDirLocation');
+                const { fetchJb1 } = await Promise.resolve().then(() => __importStar(require('./jb1ConfigLoad')));
+                const { convertTrackConfig } = await Promise.resolve().then(() => __importStar(require('./jb1ToJb2')));
+                const config = await fetchJb1(dataDirLocation);
+                const assemblyName = (0, configuration_1.getConf)(self, 'assemblyNames')[0];
                 if (!assemblyName) {
                     throw new Error('assembly name required for JBrowse 1 connection');
                 }
-                const assemblyConf = session.assemblies.find(assembly => (0, configuration_1.readConfObject)(assembly, 'name') === assemblyName);
+                const assemblyConf = session.assemblies.find(a => (0, configuration_1.readConfObject)(a, 'name') === assemblyName);
                 if (!assemblyConf) {
                     throw new Error(`Assembly "${assemblyName}" not found`);
                 }
@@ -36,21 +60,18 @@ function default_1(pluginManager) {
                     'adapter',
                 ]);
                 // @ts-expect-error
-                const jb2Tracks = (_a = config.tracks) === null || _a === void 0 ? void 0 : _a.map(jb1Track => {
-                    const jb2Track = (0, jb1ToJb2_1.convertTrackConfig)(jb1Track, config.dataRoot || '', sequenceAdapter);
-                    // @ts-expect-error
-                    jb2Track.assemblyNames = [assemblyName];
-                    return jb2Track;
-                });
+                const jb2Tracks = (_a = config.tracks) === null || _a === void 0 ? void 0 : _a.map(jb1Track => ({
+                    ...convertTrackConfig(jb1Track, config.dataRoot || '', sequenceAdapter),
+                    assemblyNames: [assemblyName],
+                }));
                 self.setTrackConfs(jb2Tracks);
-            })
-                .catch(error => {
+            }
+            catch (error) {
                 console.error(error);
                 session.notify(`There was a problem connecting to the JBrowse 1 data directory "${self.name}". Please make sure you have entered a valid location. The error that was thrown is: "${error}"`, 'error');
                 session.breakConnection(self.configuration);
-            });
+            }
         },
     }));
 }
 exports.default = default_1;
-//# sourceMappingURL=model.js.map

package/dist/JBrowse1Connection/types.js

@@ -1,3 +1,2 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-//# sourceMappingURL=types.js.map

package/dist/JBrowse1Connection/util.d.ts

@@ -8,6 +8,7 @@ type Obj = Record<string, any>;
 export declare function deepUpdate(a: Obj, b: Obj): Obj;
 /**
  * replace variables in a template string with values
+ *
  * @param template - String with variable names in curly brackets
  * e.g., `http://foo/{bar}?arg={baz.foo}`
  * @param fillWith - object with attribute-value mappings

package/dist/JBrowse1Connection/util.js

@@ -31,6 +31,7 @@ function deepUpdate(a, b) {
 exports.deepUpdate = deepUpdate;
 /**
  * replace variables in a template string with values
+ *
  * @param template - String with variable names in curly brackets
  * e.g., `http://foo/{bar}?arg={baz.foo}`
  * @param fillWith - object with attribute-value mappings
@@ -39,14 +40,11 @@ exports.deepUpdate = deepUpdate;
  * e.g., 'htp://foo/someurl?arg=valueforbaz'
  */
 function fillTemplate(template, fillWith) {
-    return template.replace(/{([\s\w.]+)}/g, (match, varName) => {
-        varName = varName.replace(/\s+/g, ''); // remove all whitespace
+    return template.replaceAll(/{([\s\w.]+)}/g, (match, varName) => {
+        varName = varName.replaceAll(/\s+/g, '');
         const fill = (0, get_value_1.default)(fillWith, varName);
         if (fill !== undefined) {
-            if (typeof fill === 'function') {
-                return fill(varName);
-            }
-            return fill;
+            return typeof fill === 'function' ? fill(varName) : fill;
         }
         if (fillWith.callback) {
             // @ts-expect-error
@@ -143,4 +141,3 @@ function mixin(dest, source, copyFunc) {
     }
     return dest; // Object
 }
-//# sourceMappingURL=util.js.map

package/dist/JBrowse1TextSearchAdapter/HttpMap.js

@@ -92,4 +92,3 @@ class HttpMap {
     }
 }
 exports.default = HttpMap;
-//# sourceMappingURL=HttpMap.js.map

package/dist/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js

@@ -63,4 +63,3 @@ class JBrowse1TextSearchAdapter extends BaseAdapter_1.BaseAdapter {
     freeResources() { }
 }
 exports.default = JBrowse1TextSearchAdapter;
-//# sourceMappingURL=JBrowse1TextSearchAdapter.js.map

package/dist/JBrowse1TextSearchAdapter/configSchema.js

@@ -38,4 +38,3 @@ exports.default = (0, configuration_1.ConfigurationSchema)('JBrowse1TextSearchAd
      */
     explicitIdentifier: 'textSearchAdapterId',
 });
-//# sourceMappingURL=configSchema.js.map

package/dist/JBrowse1TextSearchAdapter/index.js

@@ -15,4 +15,3 @@ exports.default = (pluginManager) => {
         description: 'A JBrowse 1 text search adapter',
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/NCListAdapter/NCListAdapter.js

@@ -63,4 +63,3 @@ class NCListAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
     freeResources() { }
 }
 exports.default = NCListAdapter;
-//# sourceMappingURL=NCListAdapter.js.map

package/dist/NCListAdapter/NCListFeature.js

@@ -23,8 +23,7 @@ class NCListFeature {
     jb1TagToJb2Tag(tag) {
         const t = tag.toLowerCase();
         // @ts-expect-error
-        const mapped = jb1ToJb2[t] || t;
-        return mapped;
+        return jb1ToJb2[t] || t;
     }
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
     get(attrName) {
@@ -78,4 +77,3 @@ class NCListFeature {
     }
 }
 exports.default = NCListFeature;
-//# sourceMappingURL=NCListFeature.js.map

package/dist/NCListAdapter/configSchema.js

@@ -26,4 +26,3 @@ const NCListAdapter = (0, configuration_1.ConfigurationSchema)('NCListAdapter',
     },
 }, { explicitlyTyped: true });
 exports.default = NCListAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/NCListAdapter/index.js

@@ -36,4 +36,3 @@ exports.default = (pluginManager) => {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./NCListAdapter'))).then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/index.js

@@ -21,4 +21,3 @@ class LegacyJBrowsePlugin extends Plugin_1.default {
     }
 }
 exports.default = LegacyJBrowsePlugin;
-//# sourceMappingURL=index.js.map

package/esm/GuessNCList/index.js

@@ -15,4 +15,3 @@ export default (pluginManager) => {
         };
     });
 };
-//# sourceMappingURL=index.js.map

package/esm/JBrowse1Connection/configSchema.js

@@ -31,4 +31,3 @@ const JBrowse1Connection = ConfigurationSchema('JBrowse1Connection', {
     baseConfiguration: baseConnectionConfig,
 });
 export default JBrowse1Connection;
-//# sourceMappingURL=configSchema.js.map

package/esm/JBrowse1Connection/index.js

@@ -12,4 +12,3 @@ export default (pluginManager) => {
         url: '//jbrowse.org/',
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/JBrowse1Connection/jb1ConfigLoad.js

@@ -284,4 +284,3 @@ function validateConfig(config) {
         throw new Error('Must provide a `baseUrl` in configuration');
     }
 }
-//# sourceMappingURL=jb1ConfigLoad.js.map

package/esm/JBrowse1Connection/jb1ConfigParse.js

@@ -50,7 +50,7 @@ function parse(text, url) {
                 }
                 // parse numbers if it looks numeric
                 else if (/^[+-]?[\d.,]+([eE][-+]?\d+)?$/.test(value)) {
-                    parsedValue = parseFloat(value.replace(/,/g, ''));
+                    parsedValue = parseFloat(value.replaceAll(',', ''));
                 }
                 else {
                     parsedValue = value;
@@ -368,4 +368,3 @@ function synthesizeTrackStoreConfig(mainConf, trackConfig) {
     // connect it to the track conf
     trackConfig.store = storeConf.name;
 }
-//# sourceMappingURL=jb1ConfigParse.js.map

package/esm/JBrowse1Connection/jb1ToJb2.js

@@ -25,8 +25,8 @@ export function convertTrackConfig(jb1TrackConfig, dataRoot, sequenceAdapter) {
     }
     const resolveUrlTemplate = (urlTemplate) => {
         return new URL(urlTemplate, `${dataRoot}/`).href
-            .replace(/%7B/gi, '{')
-            .replace(/%7D/gi, '}');
+            .replaceAll(/%7B/gi, '{')
+            .replaceAll(/%7D/gi, '}');
     };
     const urlTemplate = resolveUrlTemplate(jb1TrackConfig.urlTemplate);
     if (storeClass) {
@@ -409,4 +409,3 @@ function refSeqAdapterFromConfig(refSeqsData) {
         features,
     };
 }
-//# sourceMappingURL=jb1ToJb2.js.map

package/esm/JBrowse1Connection/model.d.ts

@@ -2,6 +2,18 @@ import PluginManager from '@jbrowse/core/PluginManager';
 export default function (pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     name: import("mobx-state-tree").ISimpleType<string>;
     tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        name: {
+            type: string;
+            defaultValue: string;
+            description: string;
+        };
+        assemblyNames: {
+            type: string;
+            defaultValue: never[];
+            description: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
 } & {
     configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         dataDirLocation: {
@@ -49,5 +61,5 @@ export default function (pluginManager: PluginManager): import("mobx-state-tree"
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
     clear(): void;
 } & {
-    connect(): void;
+    connect(): Promise<void>;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/esm/JBrowse1Connection/model.js

@@ -1,10 +1,9 @@
-import { ConfigurationReference, readConfObject, } from '@jbrowse/core/configuration';
+import { ConfigurationReference, getConf, readConfObject, } from '@jbrowse/core/configuration';
 import { getSession } from '@jbrowse/core/util';
 import { BaseConnectionModelFactory } from '@jbrowse/core/pluggableElementTypes/models';
 import { types } from 'mobx-state-tree';
+// locals
 import configSchema from './configSchema';
-import { fetchJb1 } from './jb1ConfigLoad';
-import { convertTrackConfig } from './jb1ToJb2';
 export default function (pluginManager) {
     return types
         .compose('JBrowse1Connection', BaseConnectionModelFactory(pluginManager), types.model({
@@ -12,17 +11,19 @@ export default function (pluginManager) {
         type: types.literal('JBrowse1Connection'),
     }))
         .actions(self => ({
-        connect() {
-            const dataDirLocation = readConfObject(self.configuration, 'dataDirLocation');
+        async connect() {
+            var _a;
             const session = getSession(self);
-            fetchJb1(dataDirLocation)
-                .then(config => {
-                var _a;
-                const assemblyName = readConfObject(self.configuration, 'assemblyNames')[0];
+            try {
+                const dataDirLocation = getConf(self, 'dataDirLocation');
+                const { fetchJb1 } = await import('./jb1ConfigLoad');
+                const { convertTrackConfig } = await import('./jb1ToJb2');
+                const config = await fetchJb1(dataDirLocation);
+                const assemblyName = getConf(self, 'assemblyNames')[0];
                 if (!assemblyName) {
                     throw new Error('assembly name required for JBrowse 1 connection');
                 }
-                const assemblyConf = session.assemblies.find(assembly => readConfObject(assembly, 'name') === assemblyName);
+                const assemblyConf = session.assemblies.find(a => readConfObject(a, 'name') === assemblyName);
                 if (!assemblyConf) {
                     throw new Error(`Assembly "${assemblyName}" not found`);
                 }
@@ -31,20 +32,17 @@ export default function (pluginManager) {
                     'adapter',
                 ]);
                 // @ts-expect-error
-                const jb2Tracks = (_a = config.tracks) === null || _a === void 0 ? void 0 : _a.map(jb1Track => {
-                    const jb2Track = convertTrackConfig(jb1Track, config.dataRoot || '', sequenceAdapter);
-                    // @ts-expect-error
-                    jb2Track.assemblyNames = [assemblyName];
-                    return jb2Track;
-                });
+                const jb2Tracks = (_a = config.tracks) === null || _a === void 0 ? void 0 : _a.map(jb1Track => ({
+                    ...convertTrackConfig(jb1Track, config.dataRoot || '', sequenceAdapter),
+                    assemblyNames: [assemblyName],
+                }));
                 self.setTrackConfs(jb2Tracks);
-            })
-                .catch(error => {
+            }
+            catch (error) {
                 console.error(error);
                 session.notify(`There was a problem connecting to the JBrowse 1 data directory "${self.name}". Please make sure you have entered a valid location. The error that was thrown is: "${error}"`, 'error');
                 session.breakConnection(self.configuration);
-            });
+            }
         },
     }));
 }
-//# sourceMappingURL=model.js.map

package/esm/JBrowse1Connection/types.js

@@ -1,2 +1 @@
 export {};
-//# sourceMappingURL=types.js.map

package/esm/JBrowse1Connection/util.d.ts

@@ -8,6 +8,7 @@ type Obj = Record<string, any>;
 export declare function deepUpdate(a: Obj, b: Obj): Obj;
 /**
  * replace variables in a template string with values
+ *
  * @param template - String with variable names in curly brackets
  * e.g., `http://foo/{bar}?arg={baz.foo}`
  * @param fillWith - object with attribute-value mappings

package/esm/JBrowse1Connection/util.js

@@ -22,6 +22,7 @@ export function deepUpdate(a, b) {
 }
 /**
  * replace variables in a template string with values
+ *
  * @param template - String with variable names in curly brackets
  * e.g., `http://foo/{bar}?arg={baz.foo}`
  * @param fillWith - object with attribute-value mappings
@@ -30,14 +31,11 @@ export function deepUpdate(a, b) {
  * e.g., 'htp://foo/someurl?arg=valueforbaz'
  */
 export function fillTemplate(template, fillWith) {
-    return template.replace(/{([\s\w.]+)}/g, (match, varName) => {
-        varName = varName.replace(/\s+/g, ''); // remove all whitespace
+    return template.replaceAll(/{([\s\w.]+)}/g, (match, varName) => {
+        varName = varName.replaceAll(/\s+/g, '');
         const fill = getValue(fillWith, varName);
         if (fill !== undefined) {
-            if (typeof fill === 'function') {
-                return fill(varName);
-            }
-            return fill;
+            return typeof fill === 'function' ? fill(varName) : fill;
         }
         if (fillWith.callback) {
             // @ts-expect-error
@@ -132,4 +130,3 @@ function mixin(dest, source, copyFunc) {
     }
     return dest; // Object
 }
-//# sourceMappingURL=util.js.map

package/esm/JBrowse1TextSearchAdapter/HttpMap.js

@@ -86,4 +86,3 @@ export default class HttpMap {
             .replace('-', 'n');
     }
 }
-//# sourceMappingURL=HttpMap.js.map

package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js

@@ -57,4 +57,3 @@ export default class JBrowse1TextSearchAdapter extends BaseAdapter {
     }
     freeResources() { }
 }
-//# sourceMappingURL=JBrowse1TextSearchAdapter.js.map

package/esm/JBrowse1TextSearchAdapter/configSchema.js

@@ -36,4 +36,3 @@ export default ConfigurationSchema('JBrowse1TextSearchAdapter', {
      */
     explicitIdentifier: 'textSearchAdapterId',
 });
-//# sourceMappingURL=configSchema.js.map

package/esm/JBrowse1TextSearchAdapter/index.js

@@ -10,4 +10,3 @@ export default (pluginManager) => {
         description: 'A JBrowse 1 text search adapter',
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/NCListAdapter/NCListAdapter.js

@@ -57,4 +57,3 @@ export default class NCListAdapter extends BaseFeatureDataAdapter {
      */
     freeResources() { }
 }
-//# sourceMappingURL=NCListAdapter.js.map

package/esm/NCListAdapter/NCListFeature.js

@@ -21,8 +21,7 @@ export default class NCListFeature {
     jb1TagToJb2Tag(tag) {
         const t = tag.toLowerCase();
         // @ts-expect-error
-        const mapped = jb1ToJb2[t] || t;
-        return mapped;
+        return jb1ToJb2[t] || t;
     }
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
     get(attrName) {
@@ -75,4 +74,3 @@ export default class NCListFeature {
         return data;
     }
 }
-//# sourceMappingURL=NCListFeature.js.map

package/esm/NCListAdapter/configSchema.js

@@ -24,4 +24,3 @@ const NCListAdapter = ConfigurationSchema('NCListAdapter', {
     },
 }, { explicitlyTyped: true });
 export default NCListAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/NCListAdapter/index.js

@@ -8,4 +8,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./NCListAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/index.js

@@ -15,4 +15,3 @@ export default class LegacyJBrowsePlugin extends Plugin {
         JBrowse1ConnectionF(pluginManager);
     }
 }
-//# sourceMappingURL=index.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-legacy-jbrowse",
-  "version": "2.5.0",
+  "version": "2.6.2",
   "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data",
   "keywords": [
     "jbrowse",
@@ -20,7 +20,6 @@
   "main": "dist/index.js",
   "files": [
     "dist",
-    "src",
     "esm"
   ],
   "scripts": {
@@ -33,7 +32,7 @@
     "useSrc": "node ../../scripts/useSrc.js",
     "prebuild": "npm run clean",
     "build:esm": "tsc --build tsconfig.build.esm.json",
-    "build:es5": "tsc --build tsconfig.build.es5.json",
+    "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
@@ -56,5 +55,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "d1ca073996d008f0fe9a52f7c1a47ae649dcfdaf"
+  "gitHead": "bbea587a402d9974acdd804a33f4b77f31a2fd5f"
 }

package/dist/GuessNCList/index.js.map

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package/dist/JBrowse1Connection/configSchema.js.map

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package/dist/JBrowse1Connection/index.js.map

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package/dist/JBrowse1Connection/jb1ConfigLoad.js.map

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