@jbrowse/plugin-legacy-jbrowse 2.4.0 → 2.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/JBrowse1Connection/jb1ConfigLoad.js +17 -11
- package/dist/JBrowse1Connection/jb1ConfigLoad.js.map +1 -1
- package/dist/JBrowse1Connection/jb1ConfigParse.js +16 -22
- package/dist/JBrowse1Connection/jb1ConfigParse.js.map +1 -1
- package/dist/JBrowse1Connection/jb1ToJb2.js +16 -28
- package/dist/JBrowse1Connection/jb1ToJb2.js.map +1 -1
- package/dist/JBrowse1Connection/model.js +2 -2
- package/dist/JBrowse1Connection/model.js.map +1 -1
- package/dist/JBrowse1Connection/util.js +4 -5
- package/dist/JBrowse1Connection/util.js.map +1 -1
- package/dist/JBrowse1TextSearchAdapter/HttpMap.js +2 -2
- package/dist/JBrowse1TextSearchAdapter/HttpMap.js.map +1 -1
- package/dist/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.d.ts +4 -4
- package/dist/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js +13 -20
- package/dist/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js.map +1 -1
- package/dist/NCListAdapter/NCListFeature.js +2 -2
- package/dist/NCListAdapter/NCListFeature.js.map +1 -1
- package/esm/JBrowse1Connection/jb1ConfigLoad.js +17 -11
- package/esm/JBrowse1Connection/jb1ConfigLoad.js.map +1 -1
- package/esm/JBrowse1Connection/jb1ConfigParse.js +16 -22
- package/esm/JBrowse1Connection/jb1ConfigParse.js.map +1 -1
- package/esm/JBrowse1Connection/jb1ToJb2.js +16 -28
- package/esm/JBrowse1Connection/jb1ToJb2.js.map +1 -1
- package/esm/JBrowse1Connection/model.js +2 -2
- package/esm/JBrowse1Connection/model.js.map +1 -1
- package/esm/JBrowse1Connection/util.js +4 -5
- package/esm/JBrowse1Connection/util.js.map +1 -1
- package/esm/JBrowse1TextSearchAdapter/HttpMap.js +2 -2
- package/esm/JBrowse1TextSearchAdapter/HttpMap.js.map +1 -1
- package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.d.ts +4 -4
- package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js +14 -21
- package/esm/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.js.map +1 -1
- package/esm/NCListAdapter/NCListFeature.js +2 -2
- package/esm/NCListAdapter/NCListFeature.js.map +1 -1
- package/package.json +2 -2
- package/src/JBrowse1Connection/jb1ConfigLoad.ts +12 -15
- package/src/JBrowse1Connection/jb1ConfigParse.ts +8 -14
- package/src/JBrowse1Connection/jb1ToJb2.ts +36 -44
- package/src/JBrowse1Connection/model.tsx +2 -2
- package/src/JBrowse1Connection/util.ts +18 -24
- package/src/JBrowse1TextSearchAdapter/HttpMap.ts +2 -2
- package/src/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.test.ts +71 -32
- package/src/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.ts +24 -25
- package/src/NCListAdapter/NCListAdapter.test.ts +2 -2
- package/src/NCListAdapter/NCListFeature.ts +2 -2
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@@ -1 +1 @@
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-
{"version":3,"file":"NCListFeature.js","sourceRoot":"","sources":["../../src/NCListAdapter/NCListFeature.ts"],"names":[],"mappings":";;AAKA,MAAM,QAAQ,GAAG,EAAE,OAAO,EAAE,QAAQ,EAAE,CAAA;AAEtC,MAAM,QAAQ,GAAG,EAAE,MAAM,EAAE,SAAS,EAAE,CAAA;AAEtC;;GAEG;AACH,MAAqB,aAAa;IAKhC,8DAA8D;IAC9D,YAAoB,SAAc,EAAE,MAAgB,EAAE,EAAW;QAA7C,cAAS,GAAT,SAAS,CAAK;QAChC,IAAI,CAAC,QAAQ,GAAG,EAAE,IAAI,SAAS,CAAC,EAAE,EAAE,CAAA;QACpC,IAAI,CAAC,YAAY,GAAG,MAAM,CAAA;IAC5B,CAAC;IAED,GAAG;QACD,MAAM,IAAI,KAAK,CAAC,iBAAiB,CAAC,CAAA;IACpC,CAAC;IAED,cAAc,CAAC,GAAW;QACxB,
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+
{"version":3,"file":"NCListFeature.js","sourceRoot":"","sources":["../../src/NCListAdapter/NCListFeature.ts"],"names":[],"mappings":";;AAKA,MAAM,QAAQ,GAAG,EAAE,OAAO,EAAE,QAAQ,EAAE,CAAA;AAEtC,MAAM,QAAQ,GAAG,EAAE,MAAM,EAAE,SAAS,EAAE,CAAA;AAEtC;;GAEG;AACH,MAAqB,aAAa;IAKhC,8DAA8D;IAC9D,YAAoB,SAAc,EAAE,MAAgB,EAAE,EAAW;QAA7C,cAAS,GAAT,SAAS,CAAK;QAChC,IAAI,CAAC,QAAQ,GAAG,EAAE,IAAI,SAAS,CAAC,EAAE,EAAE,CAAA;QACpC,IAAI,CAAC,YAAY,GAAG,MAAM,CAAA;IAC5B,CAAC;IAED,GAAG;QACD,MAAM,IAAI,KAAK,CAAC,iBAAiB,CAAC,CAAA;IACpC,CAAC;IAED,cAAc,CAAC,GAAW;QACxB,mBAAmB;QACnB,MAAM,MAAM,GAAG,QAAQ,CAAC,GAAG,CAAC,IAAI,GAAG,CAAA;QACnC,OAAO,MAAM,CAAC,WAAW,EAAE,CAAA;IAC7B,CAAC;IAED,cAAc,CAAC,GAAW;QACxB,MAAM,CAAC,GAAG,GAAG,CAAC,WAAW,EAAE,CAAA;QAC3B,mBAAmB;QACnB,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QAC/B,OAAO,MAAM,CAAA;IACf,CAAC;IAED,8DAA8D;IAC9D,GAAG,CAAC,QAAgB;QAClB,MAAM,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,IAAI,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC9D,IAAI,IAAI,IAAI,QAAQ,KAAK,aAAa,EAAE;YACtC,8DAA8D;YAC9D,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,UAAe,EAAE,EAAE,CAAC,IAAI,aAAa,CAAC,UAAU,EAAE,IAAI,CAAC,CAAC,CAAA;SAC1E;QACD,OAAO,IAAI,CAAA;IACb,CAAC;IAED;;OAEG;IACH,IAAI;QACF,OAAO,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,CAAC,GAAG,CAAC,CAAC,CAAS,EAAE,EAAE,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAA;IACzE,CAAC;IAED;;OAEG;IACH,EAAE;QACA,OAAO,IAAI,CAAC,QAAQ,CAAA;IACtB,CAAC;IAED;;OAEG;IACH,MAAM;QACJ,OAAO,IAAI,CAAC,YAAY,CAAA;IAC1B,CAAC;IAED;;OAEG;IACH,QAAQ;QACN,OAAO,IAAI,CAAC,GAAG,CAAC,aAAa,CAAC,CAAA;IAChC,CAAC;IAED,MAAM;QACJ,MAAM,IAAI,GAA4B,EAAE,QAAQ,EAAE,IAAI,CAAC,EAAE,EAAE,EAAE,CAAA;QAC7D,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,CAAC,OAAO,CAAC,CAAC,GAAW,EAAE,EAAE;YAC5C,MAAM,SAAS,GAAG,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,CAAA;YAC1C,MAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC,CAAA;YACrC,IAAI,SAAS,KAAK,aAAa,EAAE;gBAC/B,IAAI,CAAC,WAAW,GAAG,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAU,EAAE,EAAE;oBAClD,qEAAqE;oBACrE,OAAO,IAAI,aAAa,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,MAAM,EAAE,CAAA;gBAC5C,CAAC,CAAC,CAAA;aACH;iBAAM;gBACL,IAAI,CAAC,SAAS,CAAC,GAAG,KAAK,CAAA;aACxB;QACH,CAAC,CAAC,CAAA;QACF,OAAO,IAAI,CAAA;IACb,CAAC;CACF;AAlFD,gCAkFC"}
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@@ -7,9 +7,15 @@ function isUriLocation(location) {
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function isLocalPathLocation(location) {
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return location.localPath !== undefined;
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}
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export async function fetchJb1(
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export async function fetchJb1(
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// eslint-disable-next-line unicorn/no-object-as-default-parameter
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dataRoot = { uri: '', locationType: 'UriLocation' },
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// eslint-disable-next-line unicorn/no-object-as-default-parameter
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baseConfig = {
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include: ['{dataRoot}/trackList.json', '{dataRoot}/tracks.conf'],
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},
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},
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// eslint-disable-next-line unicorn/no-object-as-default-parameter
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baseConfigRoot = { uri: '', locationType: 'UriLocation' }) {
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const protocol = 'uri' in dataRoot ? 'uri' : 'localPath';
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const dataRootReg = JSON.parse(JSON.stringify(dataRoot));
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let dataRootLocation = '';
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@@ -20,7 +26,7 @@ export async function fetchJb1(dataRoot = { uri: '', locationType: 'UriLocation'
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dataRootLocation = dataRoot.localPath;
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}
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if (dataRootLocation.endsWith('/')) {
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dataRootReg[protocol] = dataRootLocation.slice(0,
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dataRootReg[protocol] = dataRootLocation.slice(0, -1);
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}
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if ((isUriLocation(baseConfigRoot) && baseConfigRoot.uri) ||
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(isLocalPathLocation(baseConfigRoot) && baseConfigRoot.localPath)) {
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@@ -33,13 +39,13 @@ export async function fetchJb1(dataRoot = { uri: '', locationType: 'UriLocation'
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baseConfigLocation = baseConfigRoot.localPath;
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}
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if (baseConfigLocation.endsWith('/')) {
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baseConfigLocation = baseConfigLocation.slice(0,
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baseConfigLocation = baseConfigLocation.slice(0, -1);
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}
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let newConfig = {};
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for (const conf of ['jbrowse.conf', 'jbrowse_conf.json']) {
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let fetchedConfig = null;
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try {
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// @ts-
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// @ts-expect-error
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fetchedConfig = await fetchConfigFile({
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[baseProtocol]: `${baseConfigLocation}/${conf}`,
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});
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@@ -107,11 +113,11 @@ function mergeConfigs(a, b) {
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}
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else if (!noRecursiveMerge(prop) &&
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prop in a &&
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// @ts-
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// @ts-expect-error
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typeof b[prop] === 'object' &&
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// @ts-
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// @ts-expect-error
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typeof a[prop] === 'object') {
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// @ts-
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// @ts-expect-error
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a[prop] = deepUpdate(a[prop], b[prop]);
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}
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else if (prop === 'dataRoot') {
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@@ -119,10 +125,10 @@ function mergeConfigs(a, b) {
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(a[prop] === 'data' && b[prop] !== undefined)) {
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a[prop] = b[prop];
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}
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// @ts-
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// @ts-expect-error
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}
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else if (a[prop] === undefined || b[prop] !== undefined) {
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// @ts-
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// @ts-expect-error
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a[prop] = b[prop];
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}
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}
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@@ -227,7 +233,7 @@ function fillTemplates(subconfig, config) {
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}
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}
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else if (typeof subconfig === 'string') {
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// @ts-
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// @ts-expect-error
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return fillTemplate(subconfig, config);
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}
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return subconfig;
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{"version":3,"file":"jb1ConfigLoad.js","sourceRoot":"","sources":["../../src/JBrowse1Connection/jb1ConfigLoad.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAA;AAC7E,OAAO,EAAE,KAAK,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAA;AAUxD,SAAS,aAAa,CAAC,QAAoB;IACzC,OAAQ,QAAwB,CAAC,GAAG,KAAK,SAAS,CAAA;AACpD,CAAC;AAED,SAAS,mBAAmB,CAC1B,QAAoB;IAEpB,OAAQ,QAA8B,CAAC,SAAS,KAAK,SAAS,CAAA;AAChE,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,QAAQ,
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+
{"version":3,"file":"jb1ConfigLoad.js","sourceRoot":"","sources":["../../src/JBrowse1Connection/jb1ConfigLoad.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAA;AAC7E,OAAO,EAAE,KAAK,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAA;AAUxD,SAAS,aAAa,CAAC,QAAoB;IACzC,OAAQ,QAAwB,CAAC,GAAG,KAAK,SAAS,CAAA;AACpD,CAAC;AAED,SAAS,mBAAmB,CAC1B,QAAoB;IAEpB,OAAQ,QAA8B,CAAC,SAAS,KAAK,SAAS,CAAA;AAChE,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,QAAQ;AAC5B,kEAAkE;AAClE,WAAuB,EAAE,GAAG,EAAE,EAAE,EAAE,YAAY,EAAE,aAAa,EAAE;AAC/D,kEAAkE;AAClE,aAAqB;IACnB,OAAO,EAAE,CAAC,2BAA2B,EAAE,wBAAwB,CAAC;CACjE;AACD,kEAAkE;AAClE,iBAA6B,EAAE,GAAG,EAAE,EAAE,EAAE,YAAY,EAAE,aAAa,EAAE;IAErE,MAAM,QAAQ,GAAG,KAAK,IAAI,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,WAAW,CAAA;IACxD,MAAM,WAAW,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAA;IACxD,IAAI,gBAAgB,GAAG,EAAE,CAAA;IACzB,IAAI,aAAa,CAAC,QAAQ,CAAC,EAAE;QAC3B,gBAAgB,GAAG,QAAQ,CAAC,GAAG,CAAA;KAChC;IACD,IAAI,mBAAmB,CAAC,QAAQ,CAAC,EAAE;QACjC,gBAAgB,GAAG,QAAQ,CAAC,SAAS,CAAA;KACtC;IACD,IAAI,gBAAgB,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE;QAClC,WAAW,CAAC,QAAQ,CAAC,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;KACtD;IACD,IACE,CAAC,aAAa,CAAC,cAAc,CAAC,IAAI,cAAc,CAAC,GAAG,CAAC;QACrD,CAAC,mBAAmB,CAAC,cAAc,CAAC,IAAI,cAAc,CAAC,SAAS,CAAC,EACjE;QACA,MAAM,YAAY,GAAG,KAAK,IAAI,cAAc,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,WAAW,CAAA;QAClE,IAAI,kBAAkB,GAAG,EAAE,CAAA;QAC3B,IAAI,aAAa,CAAC,cAAc,CAAC,EAAE;YACjC,kBAAkB,GAAG,cAAc,CAAC,GAAG,CAAA;SACxC;QACD,IAAI,mBAAmB,CAAC,cAAc,CAAC,EAAE;YACvC,kBAAkB,GAAG,cAAc,CAAC,SAAS,CAAA;SAC9C;QACD,IAAI,kBAAkB,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE;YACpC,kBAAkB,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;SACrD;QACD,IAAI,SAAS,GAAW,EAAE,CAAA;QAC1B,KAAK,MAAM,IAAI,IAAI,CAAC,cAAc,EAAE,mBAAmB,CAAC,EAAE;YACxD,IAAI,aAAa,GAAG,IAAI,CAAA;YACxB,IAAI;gBACF,mBAAmB;gBACnB,aAAa,GAAG,MAAM,eAAe,CAAC;oBACpC,CAAC,YAAY,CAAC,EAAE,GAAG,kBAAkB,IAAI,IAAI,EAAE;iBAChD,CAAC,CAAA;aACH;YAAC,OAAO,KAAK,EAAE;gBACd,OAAO,CAAC,KAAK,CACX,mBAAmB,kBAAkB,IAAI,IAAI,cAAc,CAC5D,CAAA;aACF;YACD,SAAS,GAAG,YAAY,CAAC,SAAS,EAAE,aAAa,CAAC,IAAI,EAAE,CAAA;SACzD;QACD,IAAI,WAAW,CAAC,QAAQ,CAAC,EAAE;YACzB,SAAS,CAAC,QAAQ,GAAG,WAAW,CAAC,QAAQ,CAAC,CAAA;SAC3C;QACD,OAAO,iBAAiB,CAAC,SAAS,CAAC,CAAA;KACpC;IACD,MAAM,SAAS,GAAG,cAAc,CAAC,UAAU,EAAE,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;IAClE,IAAI,WAAW,CAAC,QAAQ,CAAC,EAAE;QACzB,SAAS,CAAC,QAAQ,GAAG,WAAW,CAAC,QAAQ,CAAC,CAAA;KAC3C;IACD,OAAO,iBAAiB,CAAC,SAAS,CAAC,CAAA;AACrC,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,UAAkB,EAClB,QAAQ,GAAG,cAAc;IAEzB,MAAM,kBAAkB,GAAG,UAAU,CAAC,KAAK,CAAC,QAAQ,CAAC,EAAE,UAAU,CAAC,CAAA;IAClE,IAAI,WAAW,GAAG,MAAM,YAAY,CAAC,kBAAkB,CAAC,CAAA;IACxD,WAAW,GAAG,YAAY,CAAC,WAAW,EAAE,UAAU,CAAC,IAAI,WAAW,CAAA;IAClE,aAAa,CAAC,WAAW,EAAE,WAAW,CAAC,CAAA;IACvC,cAAc,CAAC,WAAW,CAAC,CAAA;IAC3B,OAAO,WAAW,CAAA;AACpB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,QAAoB;IACxD,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,QAAQ,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;IAC5D,IAAI,aAAa,CAAC,QAAQ,CAAC,EAAE;QAC3B,OAAO,QAAQ,CAAC,MAAM,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAA;KACtC;IACD,IAAI,mBAAmB,CAAC,QAAQ,CAAC,EAAE;QACjC,OAAO,QAAQ,CAAC,MAAM,EAAE,QAAQ,CAAC,SAAS,CAAC,CAAA;KAC5C;IACD,OAAO,QAAQ,CAAC,MAAM,CAAC,CAAA;AACzB,CAAC;AAED,MAAM,UAAU,QAAQ,CAAC,MAAc,EAAE,GAAG,GAAG,EAAE;IAC/C,IAAI,MAAM,CAAC,IAAI,EAAE,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE;QACjC,OAAO,YAAY,CAAC,MAAM,EAAE,GAAG,CAAC,CAAA;KACjC;IACD,OAAO,YAAY,CAAC,MAAM,EAAE,GAAG,CAAC,CAAA;AAClC,CAAC;AAED;;GAEG;AACH,SAAS,YAAY,CAAC,CAAgB,EAAE,CAAgB;IACtD,IAAI,CAAC,KAAK,IAAI,EAAE;QACd,OAAO,IAAI,CAAA;KACZ;IAED,IAAI,CAAC,KAAK,IAAI,EAAE;QACd,CAAC,GAAG,EAAE,CAAA;KACP;IAED,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE;QACjC,IAAI,IAAI,KAAK,QAAQ,IAAI,IAAI,IAAI,CAAC,EAAE;YAClC,MAAM,OAAO,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;YAC7B,MAAM,OAAO,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;YAC7B,IAAI,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;gBACpD,CAAC,CAAC,IAAI,CAAC,GAAG,iBAAiB,CAAC,OAAO,IAAI,EAAE,EAAE,OAAO,IAAI,EAAE,CAAC,CAAA;aAC1D;iBAAM;gBACL,MAAM,IAAI,KAAK,CACb,mDAAmD,OAAO,IAAI,OAAO,EAAE,CACxE,CAAA;aACF;SACF;aAAM,IACL,CAAC,gBAAgB,CAAC,IAAI,CAAC;YACvB,IAAI,IAAI,CAAC;YACT,mBAAmB;YACnB,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,QAAQ;YAC3B,mBAAmB;YACnB,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,QAAQ,EAC3B;YACA,mBAAmB;YACnB,CAAC,CAAC,IAAI,CAAC,GAAG,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAA;SACvC;aAAM,IAAI,IAAI,KAAK,UAAU,EAAE;YAC9B,IACE,CAAC,CAAC,IAAI,CAAC,KAAK,SAAS;gBACrB,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,MAAM,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,SAAS,CAAC,EAC7C;gBACA,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;aAClB;YACD,mBAAmB;SACpB;aAAM,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,SAAS,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,SAAS,EAAE;YACzD,mBAAmB;YACnB,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;SAClB;KACF;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED;;GAEG;AACH,SAAS,iBAAiB,CAAC,CAAU,EAAE,CAAU;IAC/C,IAAI,CAAC,CAAC,CAAC,MAAM,EAAE;QACb,OAAO,CAAC,CAAA;KACT;IAED,yCAAyC;IACzC,MAAM,OAAO,GAA0B,EAAE,CAAA;IACzC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,EAAQ,EAAE;QACvB,CAAC,CAAC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@@ -58,7 +58,7 @@ function parse(text, url) {
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if (!keyPath) {
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throw new Error(`Error parsing in section ${section.join(' - ')}`);
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}
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-
const path = section
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+
const path = [...section, ...keyPath].join('.');
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if (operation === '+=') {
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let existing = getValue(data, path);
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if (existing) {
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@@ -105,7 +105,7 @@ function parse(text, url) {
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recordVal();
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keyPath = match[1].trim().split(/\s*\.\s*/);
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[, , operation] = match;
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-
if (isAlwaysArray(section
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+
if (isAlwaysArray([...section, ...keyPath].join('.'))) {
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operation = '+=';
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}
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value = match[3].trim();
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@@ -338,13 +338,9 @@ function synthesizeTrackStoreConfig(mainConf, trackConfig) {
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// figure out what data store class to use with the track, applying some
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// defaults if it is not explicit in the configuration
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const { urlTemplate = '' } = trackConfig;
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-
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}
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else {
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storeClass = guessStoreClass(trackConfig, urlTemplate);
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}
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const storeClass = trackConfig.storeClass
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|
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? regularizeClass('JBrowse/Store', trackConfig.storeClass)
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: guessStoreClass(trackConfig, urlTemplate);
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if (!storeClass) {
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345
|
console.warn(`Unable to determine an appropriate data store to use with track '${trackConfig.label}', please explicitly specify a storeClass in the configuration.`);
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|
return;
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@@ -353,19 +349,17 @@ function synthesizeTrackStoreConfig(mainConf, trackConfig) {
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|
const storeConf = { ...trackConfig, type: storeClass };
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354
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|
// if this is the first sequence store we see, and we have no refseqs store
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|
// defined explicitly, make this the refseqs store.
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-
storeClass === 'JBrowse/Store/Sequence/
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367
|
-
storeConf.name = `store${objectHash(storeConf)}`;
|
|
368
|
-
}
|
|
352
|
+
storeConf.name =
|
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353
|
+
(storeClass === 'JBrowse/Store/Sequence/StaticChunked' ||
|
|
354
|
+
storeClass === 'JBrowse/Store/Sequence/IndexedFasta' ||
|
|
355
|
+
storeClass === 'JBrowse/Store/SeqFeature/IndexedFasta' ||
|
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356
|
+
storeClass === 'JBrowse/Store/SeqFeature/BgzipIndexedFasta' ||
|
|
357
|
+
storeClass === 'JBrowse/Store/SeqFeature/TwoBit' ||
|
|
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|
+
storeClass === 'JBrowse/Store/Sequence/TwoBit' ||
|
|
359
|
+
trackConfig.useAsRefSeqStore) &&
|
|
360
|
+
!(mainConf.stores && mainConf.stores.refseqs)
|
|
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|
+
? 'refseqs'
|
|
362
|
+
: `store${objectHash(storeConf)}`;
|
|
369
363
|
// record it
|
|
370
364
|
if (!mainConf.stores) {
|
|
371
365
|
mainConf.stores = {};
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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@@ -69,18 +69,15 @@ export function convertTrackConfig(jb1TrackConfig, dataRoot, sequenceAdapter) {
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69
69
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cramLocation: { uri: urlTemplate, locationType: 'UriLocation' },
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|
70
70
|
sequenceAdapter,
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|
71
71
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};
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72
|
-
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73
|
-
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72
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+
adapter.craiLocation = jb1TrackConfig.craiUrlTemplate
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73
|
+
? {
|
|
74
74
|
uri: resolveUrlTemplate(jb1TrackConfig.craiUrlTemplate),
|
|
75
75
|
locationType: 'UriLocation',
|
|
76
|
-
}
|
|
77
|
-
|
|
78
|
-
else {
|
|
79
|
-
adapter.craiLocation = {
|
|
76
|
+
}
|
|
77
|
+
: {
|
|
80
78
|
uri: `${urlTemplate}.crai`,
|
|
81
79
|
locationType: 'UriLocation',
|
|
82
80
|
};
|
|
83
|
-
}
|
|
84
81
|
return {
|
|
85
82
|
...jb2TrackConfig,
|
|
86
83
|
type: 'AlignmentsTrack',
|
|
@@ -262,18 +259,15 @@ export function convertTrackConfig(jb1TrackConfig, dataRoot, sequenceAdapter) {
|
|
|
262
259
|
type: 'IndexedFastaAdapter',
|
|
263
260
|
fastaLocation: { uri: urlTemplate, locationType: 'UriLocation' },
|
|
264
261
|
};
|
|
265
|
-
|
|
266
|
-
|
|
262
|
+
adapter.faiLocation = jb1TrackConfig.faiUrlTemplate
|
|
263
|
+
? {
|
|
267
264
|
uri: resolveUrlTemplate(jb1TrackConfig.faiUrlTemplate),
|
|
268
265
|
locationType: 'UriLocation',
|
|
269
|
-
}
|
|
270
|
-
|
|
271
|
-
else {
|
|
272
|
-
adapter.faiLocation = {
|
|
266
|
+
}
|
|
267
|
+
: {
|
|
273
268
|
uri: `${urlTemplate}.fai`,
|
|
274
269
|
locationType: 'UriLocation',
|
|
275
270
|
};
|
|
276
|
-
}
|
|
277
271
|
return {
|
|
278
272
|
...jb2TrackConfig,
|
|
279
273
|
type: 'SequenceTrack',
|
|
@@ -285,30 +279,24 @@ export function convertTrackConfig(jb1TrackConfig, dataRoot, sequenceAdapter) {
|
|
|
285
279
|
type: 'BgzipFastaAdapter',
|
|
286
280
|
fastaLocation: { uri: urlTemplate, locationType: 'UriLocation' },
|
|
287
281
|
};
|
|
288
|
-
|
|
289
|
-
|
|
282
|
+
adapter.faiLocation = jb1TrackConfig.faiUrlTemplate
|
|
283
|
+
? {
|
|
290
284
|
uri: resolveUrlTemplate(jb1TrackConfig.faiUrlTemplate),
|
|
291
285
|
locationType: 'UriLocation',
|
|
292
|
-
}
|
|
293
|
-
|
|
294
|
-
else {
|
|
295
|
-
adapter.faiLocation = {
|
|
286
|
+
}
|
|
287
|
+
: {
|
|
296
288
|
uri: `${urlTemplate}.fai`,
|
|
297
289
|
locationType: 'UriLocation',
|
|
298
290
|
};
|
|
299
|
-
|
|
300
|
-
|
|
301
|
-
adapter.gziLocation = {
|
|
291
|
+
adapter.gziLocation = jb1TrackConfig.gziUrlTemplate
|
|
292
|
+
? {
|
|
302
293
|
uri: resolveUrlTemplate(jb1TrackConfig.gziUrlTemplate),
|
|
303
294
|
locationType: 'UriLocation',
|
|
304
|
-
}
|
|
305
|
-
|
|
306
|
-
else {
|
|
307
|
-
adapter.gziLocation = {
|
|
295
|
+
}
|
|
296
|
+
: {
|
|
308
297
|
uri: `${urlTemplate}.gzi`,
|
|
309
298
|
locationType: 'UriLocation',
|
|
310
299
|
};
|
|
311
|
-
}
|
|
312
300
|
return {
|
|
313
301
|
...jb2TrackConfig,
|
|
314
302
|
type: 'ReferenceSequenceTrack',
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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@@ -30,10 +30,10 @@ export default function (pluginManager) {
|
|
|
30
30
|
'sequence',
|
|
31
31
|
'adapter',
|
|
32
32
|
]);
|
|
33
|
-
// @ts-
|
|
33
|
+
// @ts-expect-error
|
|
34
34
|
const jb2Tracks = (_a = config.tracks) === null || _a === void 0 ? void 0 : _a.map(jb1Track => {
|
|
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35
|
const jb2Track = convertTrackConfig(jb1Track, config.dataRoot || '', sequenceAdapter);
|
|
36
|
-
// @ts-
|
|
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|
+
// @ts-expect-error
|
|
37
37
|
jb2Track.assemblyNames = [assemblyName];
|
|
38
38
|
return jb2Track;
|
|
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39
|
});
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/JBrowse1Connection/model.tsx"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,EACtB,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,0BAA0B,EAAE,MAAM,4CAA4C,CAAA;AACvF,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AACvC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,OAAO,EAAE,QAAQ,EAAE,MAAM,iBAAiB,CAAA;AAC1C,OAAO,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAG/C,MAAM,CAAC,OAAO,WAAW,aAA4B;IACnD,OAAO,KAAK;SACT,OAAO,CACN,oBAAoB,EACpB,0BAA0B,CAAC,aAAa,CAAC,EACzC,KAAK,CAAC,KAAK,CAAC;QACV,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;QACnD,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,oBAAoB,CAAC;KAC1C,CAAC,CACH;SAEA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,OAAO;YACL,MAAM,eAAe,GAAG,cAAc,CACpC,IAAI,CAAC,aAAa,EAClB,iBAAiB,CAClB,CAAA;YACD,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAChC,QAAQ,CAAC,eAAe,CAAC;iBACtB,IAAI,CAAC,MAAM,CAAC,EAAE;;gBACb,MAAM,YAAY,GAAG,cAAc,CACjC,IAAI,CAAC,aAAa,EAClB,eAAe,CAChB,CAAC,CAAC,CAAC,CAAA;gBACJ,IAAI,CAAC,YAAY,EAAE;oBACjB,MAAM,IAAI,KAAK,CAAC,iDAAiD,CAAC,CAAA;iBACnE;gBACD,MAAM,YAAY,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAC1C,QAAQ,CAAC,EAAE,CAAC,cAAc,CAAC,QAAQ,EAAE,MAAM,CAAC,KAAK,YAAY,CAC9D,CAAA;gBACD,IAAI,CAAC,YAAY,EAAE;oBACjB,MAAM,IAAI,KAAK,CAAC,aAAa,YAAY,aAAa,CAAC,CAAA;iBACxD;gBACD,MAAM,eAAe,GAAG,cAAc,CAAC,YAAY,EAAE;oBACnD,UAAU;oBACV,SAAS;iBACV,CAAC,CAAA;gBAEF,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/JBrowse1Connection/model.tsx"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,EACtB,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,0BAA0B,EAAE,MAAM,4CAA4C,CAAA;AACvF,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AACvC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,OAAO,EAAE,QAAQ,EAAE,MAAM,iBAAiB,CAAA;AAC1C,OAAO,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAG/C,MAAM,CAAC,OAAO,WAAW,aAA4B;IACnD,OAAO,KAAK;SACT,OAAO,CACN,oBAAoB,EACpB,0BAA0B,CAAC,aAAa,CAAC,EACzC,KAAK,CAAC,KAAK,CAAC;QACV,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;QACnD,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,oBAAoB,CAAC;KAC1C,CAAC,CACH;SAEA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,OAAO;YACL,MAAM,eAAe,GAAG,cAAc,CACpC,IAAI,CAAC,aAAa,EAClB,iBAAiB,CAClB,CAAA;YACD,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAChC,QAAQ,CAAC,eAAe,CAAC;iBACtB,IAAI,CAAC,MAAM,CAAC,EAAE;;gBACb,MAAM,YAAY,GAAG,cAAc,CACjC,IAAI,CAAC,aAAa,EAClB,eAAe,CAChB,CAAC,CAAC,CAAC,CAAA;gBACJ,IAAI,CAAC,YAAY,EAAE;oBACjB,MAAM,IAAI,KAAK,CAAC,iDAAiD,CAAC,CAAA;iBACnE;gBACD,MAAM,YAAY,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAC1C,QAAQ,CAAC,EAAE,CAAC,cAAc,CAAC,QAAQ,EAAE,MAAM,CAAC,KAAK,YAAY,CAC9D,CAAA;gBACD,IAAI,CAAC,YAAY,EAAE;oBACjB,MAAM,IAAI,KAAK,CAAC,aAAa,YAAY,aAAa,CAAC,CAAA;iBACxD;gBACD,MAAM,eAAe,GAAG,cAAc,CAAC,YAAY,EAAE;oBACnD,UAAU;oBACV,SAAS;iBACV,CAAC,CAAA;gBAEF,mBAAmB;gBACnB,MAAM,SAAS,GAAG,MAAA,MAAM,CAAC,MAAM,0CAAE,GAAG,CAAC,QAAQ,CAAC,EAAE;oBAC9C,MAAM,QAAQ,GAAG,kBAAkB,CACjC,QAAQ,EACR,MAAM,CAAC,QAAQ,IAAI,EAAE,EACrB,eAAe,CAChB,CAAA;oBAED,mBAAmB;oBACnB,QAAQ,CAAC,aAAa,GAAG,CAAC,YAAY,CAAC,CAAA;oBACvC,OAAO,QAAQ,CAAA;gBACjB,CAAC,CAAC,CAAA;gBAEF,IAAI,CAAC,aAAa,CAAC,SAAS,CAAC,CAAA;YAC/B,CAAC,CAAC;iBACD,KAAK,CAAC,KAAK,CAAC,EAAE;gBACb,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;gBACpB,OAAO,CAAC,MAAM,CACZ,mEAAmE,IAAI,CAAC,IAAI,yFAAyF,KAAK,GAAG,EAC7K,OAAO,CACR,CAAA;gBACD,OAAO,CAAC,eAAe,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAC7C,CAAC,CAAC,CAAA;QACN,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
|
|
@@ -14,8 +14,7 @@ export function deepUpdate(a, b) {
|
|
|
14
14
|
typeof a[prop] === 'object') {
|
|
15
15
|
deepUpdate(a[prop], b[prop]);
|
|
16
16
|
}
|
|
17
|
-
else if (
|
|
18
|
-
typeof b[prop] !== 'undefined') {
|
|
17
|
+
else if (a[prop] === undefined || b[prop] !== undefined) {
|
|
19
18
|
a[prop] = b[prop];
|
|
20
19
|
}
|
|
21
20
|
}
|
|
@@ -31,7 +30,7 @@ export function deepUpdate(a, b) {
|
|
|
31
30
|
* e.g., 'htp://foo/someurl?arg=valueforbaz'
|
|
32
31
|
*/
|
|
33
32
|
export function fillTemplate(template, fillWith) {
|
|
34
|
-
return template.replace(
|
|
33
|
+
return template.replace(/{([\s\w.]+)}/g, (match, varName) => {
|
|
35
34
|
varName = varName.replace(/\s+/g, ''); // remove all whitespace
|
|
36
35
|
const fill = getValue(fillWith, varName);
|
|
37
36
|
if (fill !== undefined) {
|
|
@@ -41,7 +40,7 @@ export function fillTemplate(template, fillWith) {
|
|
|
41
40
|
return fill;
|
|
42
41
|
}
|
|
43
42
|
if (fillWith.callback) {
|
|
44
|
-
// @ts-
|
|
43
|
+
// @ts-expect-error
|
|
45
44
|
const v = fillWith.callback.call(this, varName);
|
|
46
45
|
if (v !== undefined) {
|
|
47
46
|
return v;
|
|
@@ -126,7 +125,7 @@ function mixin(dest, source, copyFunc) {
|
|
|
126
125
|
// toString() method that source inherited from Object.prototype
|
|
127
126
|
s = source[name];
|
|
128
127
|
if (!(name in dest) ||
|
|
129
|
-
// @ts-
|
|
128
|
+
// @ts-expect-error
|
|
130
129
|
(dest[name] !== s && (!(name in empty) || empty[name] !== s))) {
|
|
131
130
|
dest[name] = copyFunc ? copyFunc(s) : s;
|
|
132
131
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../src/JBrowse1Connection/util.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAM,WAAW,CAAA;AAGhC,8DAA8D;AAC9D,MAAM,UAAU,OAAO,CAAC,GAAQ;IAC9B,OAAO,GAAG,IAAI,GAAG,CAAC,KAAK,IAAI,OAAO,GAAG,CAAC,KAAK,KAAK,QAAQ,CAAA;AAC1D,CAAC;AAED,8DAA8D;AAC9D,MAAM,UAAU,QAAQ,CAAC,GAAQ;IAC/B,OAAO,GAAG,IAAI,GAAG,CAAC,GAAG,IAAI,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,CAAA;AACtD,CAAC;AAOD,MAAM,UAAU,UAAU,CAAC,CAAM,EAAE,CAAM;IACvC,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE;QACjC,IACE,IAAI,IAAI,CAAC;YACT,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,QAAQ;YAC3B,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,QAAQ,EAC3B;YACA,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAA;SAC7B;aAAM,
|
|
1
|
+
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../src/JBrowse1Connection/util.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAM,WAAW,CAAA;AAGhC,8DAA8D;AAC9D,MAAM,UAAU,OAAO,CAAC,GAAQ;IAC9B,OAAO,GAAG,IAAI,GAAG,CAAC,KAAK,IAAI,OAAO,GAAG,CAAC,KAAK,KAAK,QAAQ,CAAA;AAC1D,CAAC;AAED,8DAA8D;AAC9D,MAAM,UAAU,QAAQ,CAAC,GAAQ;IAC/B,OAAO,GAAG,IAAI,GAAG,CAAC,GAAG,IAAI,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,CAAA;AACtD,CAAC;AAOD,MAAM,UAAU,UAAU,CAAC,CAAM,EAAE,CAAM;IACvC,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE;QACjC,IACE,IAAI,IAAI,CAAC;YACT,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,QAAQ;YAC3B,OAAO,CAAC,CAAC,IAAI,CAAC,KAAK,QAAQ,EAC3B;YACA,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAA;SAC7B;aAAM,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,SAAS,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,SAAS,EAAE;YACzD,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;SAClB;KACF;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,YAAY,CAAC,QAAgB,EAAE,QAAa;IAC1D,OAAO,QAAQ,CAAC,OAAO,CAAC,eAAe,EAAE,CAAC,KAAK,EAAE,OAAe,EAAU,EAAE;QAC1E,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAA,CAAC,wBAAwB;QAC9D,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAA;QACxC,IAAI,IAAI,KAAK,SAAS,EAAE;YACtB,IAAI,OAAO,IAAI,KAAK,UAAU,EAAE;gBAC9B,OAAO,IAAI,CAAC,OAAO,CAAC,CAAA;aACrB;YACD,OAAO,IAAI,CAAA;SACZ;QACD,IAAI,QAAQ,CAAC,QAAQ,EAAE;YACrB,mBAAmB;YACnB,MAAM,CAAC,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;YAC/C,IAAI,CAAC,KAAK,SAAS,EAAE;gBACnB,OAAO,CAAC,CAAA;aACT;SACF;QACD,OAAO,KAAK,CAAA;IACd,CAAC,CAAC,CAAA;AACJ,CAAC;AAED;;;;;GAKG;AACH,8DAA8D;AAC9D,MAAM,UAAU,KAAK,CAAC,GAAQ;IAC5B,IACE,CAAC,GAAG;QACJ,OAAO,GAAG,KAAK,QAAQ;QACvB,MAAM,CAAC,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,mBAAmB,EAC3D;QACA,+CAA+C;QAC/C,OAAO,GAAG,CAAA,CAAC,WAAW;KACvB;IACD,IAAI,GAAG,CAAC,QAAQ,IAAI,WAAW,IAAI,GAAG,EAAE;QACtC,WAAW;QACX,OAAO,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA,CAAC,OAAO;KACnC;IACD,IAAI,GAAG,YAAY,IAAI,EAAE;QACvB,OAAO;QACP,OAAO,IAAI,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC,CAAA,CAAC,OAAO;KACvC;IACD,IAAI,GAAG,YAAY,MAAM,EAAE;QACzB,SAAS;QACT,OAAO,IAAI,MAAM,CAAC,GAAG,CAAC,CAAA,CAAC,SAAS;KACjC;IACD,IAAI,CAAC,CAAA;IACL,IAAI,CAAC,CAAA;IACL,IAAI,CAAC,CAAA;IACL,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE;QACtB,QAAQ;QACR,CAAC,GAAG,EAAE,CAAA;QACN,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,EAAE;YACtC,IAAI,CAAC,IAAI,GAAG,EAAE;gBACZ,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAA;aACrB;SACF;QACD,mDAAmD;QACnD,kCAAkC;QAClC,mBAAmB;QACnB,6DAA6D;KAC9D;SAAM;QACL,kBAAkB;QAClB,CAAC,GAAG,GAAG,CAAC,WAAW,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,EAAE,CAAA;KACjD;IACD,OAAO,KAAK,CAAC,CAAC,EAAE,GAAG,EAAE,KAAK,CAAC,CAAA;AAC7B,CAAC;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,SAAS,KAAK,CAAC,IAAS,EAAE,MAAW,EAAE,QAAkB;IACvD,IAAI,IAAI,CAAA;IACR,IAAI,CAAC,CAAA;IACL,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,KAAK,IAAI,IAAI,MAAM,EAAE;QACnB,uEAAuE;QACvE,wEAAwE;QACxE,sEAAsE;QACtE,gEAAgE;QAChE,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;QAChB,IACE,CAAC,CAAC,IAAI,IAAI,IAAI,CAAC;YACf,mBAAmB;YACnB,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,KAAK,CAAC,IAAI,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAC7D;YACA,IAAI,CAAC,IAAI,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;SACxC;KACF;IAED,OAAO,IAAI,CAAA,CAAC,SAAS;AACvB,CAAC"}
|
|
@@ -70,10 +70,10 @@ export default class HttpMap {
|
|
|
70
70
|
while (hex.length < 8) {
|
|
71
71
|
hex = `0${hex}`;
|
|
72
72
|
}
|
|
73
|
-
hex = hex.
|
|
73
|
+
hex = hex.slice(8 - hashHexCharacters);
|
|
74
74
|
const dirpath = [];
|
|
75
75
|
for (let i = 0; i < hex.length; i += 3) {
|
|
76
|
-
dirpath.push(hex.
|
|
76
|
+
dirpath.push(hex.slice(i, i + 3));
|
|
77
77
|
}
|
|
78
78
|
return `${dirpath.join('/')}.json${compress ? 'z' : ''}`;
|
|
79
79
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"HttpMap.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/HttpMap.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,MAAM,cAAc,CAAA;AAEhC,MAAM,CAAC,OAAO,OAAO,OAAO;IAG1B,YAAY,IAAqB;QAC/B,qCAAqC;QACrC,IAAI,CAAC,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,GAAG,CAAA;IAC7D,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,QAAQ;QACZ,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAA;QAC7C,MAAM,EAAE,QAAQ,EAAE,WAAW,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAC9C,MAAM,iBAAiB,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QACvD,OAAO,EAAE,iBAAiB,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAA;IAChD,CAAC;IAED,KAAK,CAAC,oBAAoB;QACxB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,iBAAiB,CAAA;IAC/B,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,QAAQ,CAAA;IACtB,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,GAAG,CAAC,GAAW;QACnB,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QACxC,OAAO,MAAM,CAAC,GAAG,CAAC,CAAA;IACpB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,SAAS,CAAC,GAAW;QACzB,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;QAClC,MAAM,YAAY,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,WAAW,CAAC,CAAA;QACzD,OAAO,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAA;IACpC,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,QAAQ,CAAC,EAAU;QACvB,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,IAAI,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,CAAA;QAChD,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE;YAChB,MAAM,IAAI,KAAK,CAAC,QAAQ,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAA;SAClE;QACD,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAA;IACxB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,YAAY,CAAC,GAAW;QAC5B,qDAAqD;QACrD,MAAM,iBAAiB,GAAG,MAAM,IAAI,CAAC,oBAAoB,EAAE,CAAA;QAC3D,IAAI,iBAAiB,EAAE;YACrB,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,OAAO,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE;gBACrB,GAAG,GAAG,IAAI,GAAG,EAAE,CAAA;aAChB;YACD,GAAG,GAAG,GAAG,CAAC,
|
|
1
|
+
{"version":3,"file":"HttpMap.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/HttpMap.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,MAAM,cAAc,CAAA;AAEhC,MAAM,CAAC,OAAO,OAAO,OAAO;IAG1B,YAAY,IAAqB;QAC/B,qCAAqC;QACrC,IAAI,CAAC,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,GAAG,CAAA;IAC7D,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,QAAQ;QACZ,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAA;QAC7C,MAAM,EAAE,QAAQ,EAAE,WAAW,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAC9C,MAAM,iBAAiB,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QACvD,OAAO,EAAE,iBAAiB,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAA;IAChD,CAAC;IAED,KAAK,CAAC,oBAAoB;QACxB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,iBAAiB,CAAA;IAC/B,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,QAAQ,CAAA;IACtB,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAA;QAClC,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,GAAG,CAAC,GAAW;QACnB,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QACxC,OAAO,MAAM,CAAC,GAAG,CAAC,CAAA;IACpB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,SAAS,CAAC,GAAW;QACzB,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;QAClC,MAAM,YAAY,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,WAAW,CAAC,CAAA;QACzD,OAAO,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAA;IACpC,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,QAAQ,CAAC,EAAU;QACvB,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,IAAI,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,CAAA;QAChD,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE;YAChB,MAAM,IAAI,KAAK,CAAC,QAAQ,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAA;SAClE;QACD,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAA;IACxB,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,YAAY,CAAC,GAAW;QAC5B,qDAAqD;QACrD,MAAM,iBAAiB,GAAG,MAAM,IAAI,CAAC,oBAAoB,EAAE,CAAA;QAC3D,IAAI,iBAAiB,EAAE;YACrB,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,OAAO,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE;gBACrB,GAAG,GAAG,IAAI,GAAG,EAAE,CAAA;aAChB;YACD,GAAG,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,GAAG,iBAAiB,CAAC,CAAA;YACtC,MAAM,OAAO,GAAG,EAAE,CAAA;YAClB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;gBACtC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;aAClC;YACD,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAA;SACzD;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,IAAI,CAAC,IAAY;QACf,OAAO,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;aAC5B,QAAQ,CAAC,KAAK,CAAC;aACf,WAAW,EAAE;aACb,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,CAAA;IACtB,CAAC;CACF"}
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@@ -1,7 +1,6 @@
|
|
|
1
1
|
import { BaseTextSearchAdapter, BaseArgs, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
2
2
|
import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
|
|
3
|
-
import {
|
|
4
|
-
import MyConfigSchema from './configSchema';
|
|
3
|
+
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
5
4
|
import HttpMap from './HttpMap';
|
|
6
5
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
7
6
|
import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
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|
@@ -16,16 +15,17 @@ interface SearchResults {
|
|
|
16
15
|
exact: [string, number, string, string, number, number][];
|
|
17
16
|
}
|
|
18
17
|
export type NamesIndexRecord = string | Array<string | number>;
|
|
18
|
+
type IndexFile = Record<string, SearchResults>;
|
|
19
19
|
export default class JBrowse1TextSearchAdapter extends BaseAdapter implements BaseTextSearchAdapter {
|
|
20
20
|
httpMap: HttpMap;
|
|
21
21
|
tracksNames?: string[];
|
|
22
|
-
constructor(config:
|
|
22
|
+
constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
|
|
23
23
|
/**
|
|
24
24
|
* Returns the contents of the file containing the query if it exists
|
|
25
25
|
* else it returns empty
|
|
26
26
|
* @param query - string query
|
|
27
27
|
*/
|
|
28
|
-
loadIndexFile(query: string): Promise<
|
|
28
|
+
loadIndexFile(query: string): Promise<IndexFile>;
|
|
29
29
|
searchIndex(args: BaseArgs): Promise<BaseResult[]>;
|
|
30
30
|
formatResults(results: SearchResults, tracks: string[], searchType?: string): BaseResult[];
|
|
31
31
|
freeResources(): void;
|
|
@@ -1,20 +1,15 @@
|
|
|
1
1
|
import { BaseAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
2
2
|
import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
|
|
3
|
-
import { readConfObject } from '@jbrowse/core/configuration';
|
|
3
|
+
import { readConfObject, } from '@jbrowse/core/configuration';
|
|
4
4
|
import HttpMap from './HttpMap';
|
|
5
|
-
// Jbrowse1 text search adapter
|
|
6
5
|
// Uses index built by generate-names.pl
|
|
7
6
|
export default class JBrowse1TextSearchAdapter extends BaseAdapter {
|
|
8
7
|
constructor(config, getSubAdapter, pluginManager) {
|
|
9
8
|
super(config, getSubAdapter, pluginManager);
|
|
10
|
-
const
|
|
11
|
-
|
|
12
|
-
throw new Error('must provide namesIndexLocation');
|
|
13
|
-
}
|
|
9
|
+
const namesIndex = readConfObject(config, 'namesIndexLocation');
|
|
10
|
+
const { baseUri, uri } = namesIndex;
|
|
14
11
|
this.httpMap = new HttpMap({
|
|
15
|
-
url:
|
|
16
|
-
? new URL(namesIndexLocation.uri, namesIndexLocation.baseUri).href
|
|
17
|
-
: namesIndexLocation.uri,
|
|
12
|
+
url: baseUri ? new URL(uri, baseUri).href : uri,
|
|
18
13
|
});
|
|
19
14
|
}
|
|
20
15
|
/**
|
|
@@ -28,23 +23,21 @@ export default class JBrowse1TextSearchAdapter extends BaseAdapter {
|
|
|
28
23
|
async searchIndex(args) {
|
|
29
24
|
const { searchType, queryString } = args;
|
|
30
25
|
const tracks = this.tracksNames || (await this.httpMap.getTrackNames());
|
|
31
|
-
const
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
|
|
26
|
+
const str = queryString.toLowerCase();
|
|
27
|
+
const entries = await this.loadIndexFile(str);
|
|
28
|
+
return entries[str]
|
|
29
|
+
? this.formatResults(entries[str], tracks, searchType)
|
|
30
|
+
: [];
|
|
36
31
|
}
|
|
37
32
|
formatResults(results, tracks, searchType) {
|
|
38
33
|
return [
|
|
39
34
|
...(searchType === 'exact'
|
|
40
35
|
? []
|
|
41
|
-
: results.prefix.map(result => {
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
});
|
|
47
|
-
})),
|
|
36
|
+
: results.prefix.map(result => new BaseResult({
|
|
37
|
+
label: typeof result === 'object' ? result.name : result,
|
|
38
|
+
matchedAttribute: 'name',
|
|
39
|
+
matchedObject: { result: result },
|
|
40
|
+
}))),
|
|
48
41
|
...results.exact.map(result => {
|
|
49
42
|
const name = result[0];
|
|
50
43
|
const trackIndex = result[1];
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"JBrowse1TextSearchAdapter.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAGL,WAAW,GACZ,MAAM,yCAAyC,CAAA;AAChD,OAAO,UAAU,MAAM,sCAAsC,CAAA;
|
|
1
|
+
{"version":3,"file":"JBrowse1TextSearchAdapter.js","sourceRoot":"","sources":["../../src/JBrowse1TextSearchAdapter/JBrowse1TextSearchAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAGL,WAAW,GACZ,MAAM,yCAAyC,CAAA;AAChD,OAAO,UAAU,MAAM,sCAAsC,CAAA;AAC7D,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,OAAO,MAAM,WAAW,CAAA;AAkB/B,wCAAwC;AACxC,MAAM,CAAC,OAAO,OAAO,yBACnB,SAAQ,WAAW;IAOnB,YACE,MAA6B,EAC7B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,oBAAoB,CAAC,CAAA;QAC/D,MAAM,EAAE,OAAO,EAAE,GAAG,EAAE,GAAG,UAAU,CAAA;QACnC,IAAI,CAAC,OAAO,GAAG,IAAI,OAAO,CAAC;YACzB,GAAG,EAAE,OAAO,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,GAAG,EAAE,OAAO,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG;SAChD,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,aAAa,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAc;QAC9B,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QACxC,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,IAAI,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,aAAa,EAAE,CAAC,CAAA;QACvE,MAAM,GAAG,GAAG,WAAW,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,CAAA;QAC7C,OAAO,OAAO,CAAC,GAAG,CAAC;YACjB,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,MAAM,EAAE,UAAU,CAAC;YACtD,CAAC,CAAC,EAAE,CAAA;IACR,CAAC;IACD,aAAa,CAAC,OAAsB,EAAE,MAAgB,EAAE,UAAmB;QACzE,OAAO;YACL,GAAG,CAAC,UAAU,KAAK,OAAO;gBACxB,CAAC,CAAC,EAAE;gBACJ,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAChB,MAAM,CAAC,EAAE,CACP,IAAI,UAAU,CAAC;oBACb,KAAK,EAAE,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM;oBACxD,gBAAgB,EAAE,MAAM;oBACxB,aAAa,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;iBAClC,CAAC,CACL,CAAC;YACN,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAC5B,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACtB,MAAM,UAAU,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBAC5B,MAAM,OAAO,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACzB,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACvB,MAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;gBACrB,MAAM,SAAS,GAAG,GAAG,OAAO,IAAI,IAAI,IAAI,KAAK,IAAI,GAAG,EAAE,CAAA;gBACtD,OAAO,IAAI,UAAU,CAAC;oBACpB,SAAS,EAAE,SAAS;oBACpB,KAAK,EAAE,IAAI;oBACX,gBAAgB,EAAE,MAAM;oBACxB,aAAa,EAAE,MAAM;oBACrB,OAAO,EAAE,MAAM,CAAC,UAAU,CAAC;iBAC5B,CAAC,CAAA;YACJ,CAAC,CAAC;SACH,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,EAAE,KAAK,kBAAkB,CAAC,CAAA;IAC9D,CAAC;IAED,aAAa,KAAI,CAAC;CACnB"}
|